View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9912_low_12 (Length: 307)
Name: NF9912_low_12
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11415142 - 11415433
Alignment:
| Q |
1 |
tgactaatgctaatgctattagtacta--atttacattagagtataataaaaggaataaataataataaactcagtttaacattattcaggattcatcat |
98 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11415142 |
tgactaatgctaatgctattagtactataatttacattagagtatcataaaagggaaaaataataataaactcagtttaacattattcaggattcatcat |
11415241 |
T |
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| Q |
99 |
gaactcataatttgactgtcaccacaaaacaagcaagttaaataaaaaattccgcagtgatgctttgaattttttgttattctaaatttttcttgtattc |
198 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11415242 |
gaactcataatttgtctgtcaccacaaaacaaacaagttaaataaaaaattccgcagtgatgctttgaattttttgttattctaaattttccttgtattc |
11415341 |
T |
|
| Q |
199 |
ccnnnnnnnnggtcaagaattttccttgtactctaccaaataaaacctaatttttcctttgtcattaagattgttttcattccacttgtagc |
290 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11415342 |
cttttttttttgtcaagaattttccttgtactctaccaaataaaacctaatttttcctttgtcattaagattgttttcatttcacttgtagc |
11415433 |
T |
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