View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9912_low_4 (Length: 455)

Name: NF9912_low_4
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9912_low_4
NF9912_low_4
[»] chr2 (8 HSPs)
chr2 (97-432)||(11723987-11724320)
chr2 (97-380)||(11593722-11594005)
chr2 (97-380)||(11605638-11605921)
chr2 (97-436)||(11687564-11687902)
chr2 (112-325)||(11613106-11613308)
chr2 (341-387)||(11613068-11613114)
chr2 (394-438)||(11794466-11794510)
chr2 (398-435)||(27311667-27311704)
[»] chr3 (1 HSPs)
chr3 (395-436)||(45746489-45746530)
[»] chr8 (2 HSPs)
chr8 (390-438)||(38298588-38298636)
chr8 (394-438)||(43932136-43932180)
[»] chr5 (3 HSPs)
chr5 (390-437)||(13278899-13278946)
chr5 (394-436)||(8235466-8235508)
chr5 (394-438)||(1138235-1138279)
[»] scaffold0023 (1 HSPs)
scaffold0023 (396-438)||(112910-112952)
[»] chr6 (1 HSPs)
chr6 (396-438)||(33127873-33127915)
[»] chr1 (1 HSPs)
chr1 (394-438)||(34146891-34146935)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 97 - 432
Target Start/End: Original strand, 11723987 - 11724320
Alignment:
Q  97 cattgtgtgtagatatactaactcaccttttctttcagaagttgattttcaaaccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactc 196  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11723987 cattgtgtctagttatactaactcaccttttctttcagaagttgattttcaaaccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactc 11724086  T
Q  197 tattttgtctctccatttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgactagcattcttgagatcata 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  11724087 tattttgtctctccatttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgagtagcattctt--gatcata 11724184  T
Q  297 acatatacaagaagtgattagtatgttaattatatcaattagtggtatgttaaaagaattgaatggagattttgttcaaaccaaaagaataattttgtta 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| |||| || |||||||||||||||||||||||||||||||| |||| |||    
T  11724185 acatatacaagaagtgattagtatgttaattatatcaattagtggcttgtaaaaataactgaatggagattttgttcaaaccaaaagaatatttttatta 11724284  T
Q  397 taagaaacaattgattttttggatttattgaaaaat 432  Q
    ||| |||||||||| ||||| |||||||||||||||    
T  11724285 taaaaaacaattgactttttagatttattgaaaaat 11724320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 97 - 380
Target Start/End: Complemental strand, 11594005 - 11593722
Alignment:
Q  97 cattgtgtgtagatatactaactcaccttttctttcagaagttgattttcaaaccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactc 196  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11594005 cattgtttgtagttatactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactc 11593906  T
Q  197 tattttgtctctccatttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgactagcattcttgagatcata 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11593905 tattttgtctctccatttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgagtagcattcttgagatcata 11593806  T
Q  297 acatatacaagaagtgattagtatgttaattatatcaattagtggtatgttaaaagaattgaatggagattttgttcaaaccaa 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11593805 acatatacaagaagtgattagtatgttaattatatcaattagtggtatgttaaaagaattgaatggagattttgttcaaaccaa 11593722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 97 - 380
Target Start/End: Complemental strand, 11605921 - 11605638
Alignment:
Q  97 cattgtgtgtagatatactaactcaccttttctttcagaagttgattttcaaaccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactc 196  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11605921 cattgtttgtagttatactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactc 11605822  T
Q  197 tattttgtctctccatttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgactagcattcttgagatcata 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11605821 tattttgtctctccatttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgagtagcattcttgagatcata 11605722  T
Q  297 acatatacaagaagtgattagtatgttaattatatcaattagtggtatgttaaaagaattgaatggagattttgttcaaaccaa 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11605721 acatatacaagaagtgattagtatgttaattatatcaattagtggtatgttaaaagaattgaatggagattttgttcaaaccaa 11605638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 97 - 436
Target Start/End: Complemental strand, 11687902 - 11687564
Alignment:
Q  97 cattgtgtgtagatatactaactcaccttttctttcagaagttgattttcaaaccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactc 196  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||| ||        
T  11687902 cattgtgtgtagttatactaactcaccttttctttcagaagttcattttcaagccgaagttatttcaaatgtgaatcacggcatgcttggcaaaatgtat 11687803  T
Q  197 tattttgtctctccat---ttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgactagcattcttgagatc 293  Q
    | |  |||||||||||   |||| ||||||||||| ||||||||| ||||||| |||||| ||||||||||||| |  || |  ||||||||||||||||    
T  11687802 tctcctgtctctccatcatttccattttctcttccgaaagcatttcaatttcacctcgaagagcagcgttaactgctattgggatagcattcttgagatc 11687703  T
Q  294 ataacatatacaagaagtgattagtatgttaattatatcaattagtggtatgttaaaagaattgaatggagattttgttcaaaccaaaagaataattttg 393  Q
    |||||||||||||||||||||||||||||||    |||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||| ||||     
T  11687702 ataacatatacaagaagtgattagtatgtta----tatcaattagtggcttgtaaaaataattgaatggagattttgttcaaaccaaaagaatattttta 11687607  T
Q  394 ttataagaaacaattgattttttggatttattgaaaaattaat 436  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||    
T  11687606 ttataagaaacaattgactttttagatttattgaataattaat 11687564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 112 - 325
Target Start/End: Complemental strand, 11613308 - 11613106
Alignment:
Q  112 tactaactcaccttttctttcagaagttgattttcaaaccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca 211  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||  | |||||||| ||||    
T  11613308 tactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaaaatacattcttttgtctttcca 11613209  T
Q  212 tttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgactagcattcttgagatcataacatatacaagaagt 311  Q
             ||  ||||||||| ||||   |||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  11613208 ---------tcatttccaaaagaatttctttttcagctcgaagagcagcgttaacttccttttgagtagcattctt--gatcataacatatacaagaagt 11613120  T
Q  312 gattagtatgttaa 325  Q
    ||||||||||||||    
T  11613119 gattagtatgttaa 11613106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 11613114 - 11613068
Alignment:
Q  341 gtatgttaaaagaattgaatggagattttgttcaaaccaaaagaata 387  Q
    |||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  11613114 gtatgttaaaagaattaaatggagattttgttcaaaacaaaaaaata 11613068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 11794466 - 11794510
Alignment:
Q  394 ttataagaaacaattgattttttggatttattgaaaaattaatgt 438  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||    
T  11794466 ttataagaaaaaattgattttttagatttattgaataattaatgt 11794510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 27311704 - 27311667
Alignment:
Q  398 aagaaacaattgattttttggatttattgaaaaattaa 435  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  27311704 aagaaacaattgattttttagatttattgaataattaa 27311667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 45746489 - 45746530
Alignment:
Q  395 tataagaaacaattgattttttggatttattgaaaaattaat 436  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  45746489 tataagaaacaattgattttttagatttattgaataattaat 45746530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 38298636 - 38298588
Alignment:
Q  390 tttgttataagaaacaattgattttttggatttattgaaaaattaatgt 438  Q
    ||||||||||||||||||||||||||| | || |||||| |||||||||    
T  38298636 tttgttataagaaacaattgattttttaggttcattgaataattaatgt 38298588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 43932180 - 43932136
Alignment:
Q  394 ttataagaaacaattgattttttggatttattgaaaaattaatgt 438  Q
    ||||||||||||||||| ||||| |||| |||||| |||||||||    
T  43932180 ttataagaaacaattgactttttagattcattgaataattaatgt 43932136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 13278899 - 13278946
Alignment:
Q  390 tttgttataagaaacaattgattttttggatttattgaaaaattaatg 437  Q
    ||||||||||||||||||||||||||| | ||||||||| | ||||||    
T  13278899 tttgttataagaaacaattgattttttaggtttattgaatagttaatg 13278946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 8235508 - 8235466
Alignment:
Q  394 ttataagaaacaattgattttttggatttattgaaaaattaat 436  Q
    |||||||||| |||||||||||| ||||||||||| |||||||    
T  8235508 ttataagaaaaaattgattttttagatttattgaataattaat 8235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 1138235 - 1138279
Alignment:
Q  394 ttataagaaacaattgattttttggatttattgaaaaattaatgt 438  Q
    ||||||||||||||| | ||||| ||||||||||| |||||||||    
T  1138235 ttataagaaacaatttacttttttgatttattgaataattaatgt 1138279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 112952 - 112910
Alignment:
Q  396 ataagaaacaattgattttttggatttattgaaaaattaatgt 438  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  112952 ataagaaacaattgactttttagatttattgaataattaatgt 112910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 33127915 - 33127873
Alignment:
Q  396 ataagaaacaattgattttttggatttattgaaaaattaatgt 438  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  33127915 ataagaaacaattgactttttagatttattgaataattaatgt 33127873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 34146935 - 34146891
Alignment:
Q  394 ttataagaaacaattgattttttggatttattgaaaaattaatgt 438  Q
    |||||||||| |||||||||||| |||| |||||| |||||||||    
T  34146935 ttataagaaaaaattgatttttttgattcattgaataattaatgt 34146891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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