View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9912_low_5 (Length: 419)
Name: NF9912_low_5
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 407
Target Start/End: Original strand, 22803570 - 22803972
Alignment:
| Q |
6 |
agaagcaaagggaaaggaaaaggaagacaaatatgtagatattggacaagagaatatgagtgtcttctgaaaggtttctttgtcaatctccacacaccag |
105 |
Q |
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| T |
22803570 |
agaagaaaagggaaaggaaaaggaagacaaatatgtagatattggacaagagaatatgagtgtcttctgaaaggtttctttgtcaatctccacacaccag |
22803669 |
T |
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| Q |
106 |
tttatttgggttcttgaggactaagtggaattttcaacaattgttttgatgatggccaaggcatgaggctagccctgtcaaatttatatatcagctagat |
205 |
Q |
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| T |
22803670 |
tttatttgggttcttgaggactaagtggaattttcaacaattgttttgatgatggccaaggcatgaggctagccctgtcaaatttatatatcagctagat |
22803769 |
T |
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| Q |
206 |
tatgtaaaatgtttcatttgtaatttatgaactatgtga-nnnnnnncgttgatgtgtaaannnnnnncgcatttcctccatttgatattaattatcact |
304 |
Q |
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| T |
22803770 |
tatgtaaaatgtttcatttttaatttatgaacaatgtgattttttttcgttgatgtgtaaatttttttcgcatttcctccatttgatattaattatcact |
22803869 |
T |
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| Q |
305 |
aaggtgttaagaaaattattagcgtgggataaagcttgattgttgttgtatgtcttttattgtgaattagaacgaaaatcatagcaagacaatgatgtat |
404 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||||||||| |
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| T |
22803870 |
aaggtgttaagaaaattattaacgtgggataaagcttgattgttgttgtttgtcttttgttgtgaattagaacaaaagtcatagcaaggcaatgatgtat |
22803969 |
T |
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| Q |
405 |
atg |
407 |
Q |
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||| |
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| T |
22803970 |
atg |
22803972 |
T |
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