View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_high_12 (Length: 411)
Name: NF9913A_high_12
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 38 - 389
Target Start/End: Original strand, 5938505 - 5938856
Alignment:
| Q |
38 |
gaaggacgtgacttcaaacttgatgcctattgtatcaataatggttttaagttgcggtcacggtcctgattatattgcaatcttttttaaattgcggtca |
137 |
Q |
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| T |
5938505 |
gaaggacgtgacttcaaacttgatgcctattgtatcaataatggttttaagttgcggtcacggtcctgattatattgcaatcttttttaaattgcggtca |
5938604 |
T |
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| Q |
138 |
cggatctgattacactagattactacaatctggaatgcgggaaaatgctgccgatgcagtcgaaattgatgctgttgcggaaacttcaaacccgcaatat |
237 |
Q |
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| T |
5938605 |
cggtcctgattacactagattactacaatctagaatgcgggaaaatgttgccgatgcagtcgaaattgatgctgttgtggaaacttcaaacccgcaatat |
5938704 |
T |
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| Q |
238 |
tgcgaacctcatgttaaaccatgatttcagtcataaatggcctcaatcttaagctaaataaagataccacgccaccctttattatcagaatcttattcta |
337 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5938705 |
tgcgaacctcattttaaaccatgatttcagtcataaatggcctcaatcttaagctaaataaagataccacgccaccctttattatcagaatcttattcta |
5938804 |
T |
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| Q |
338 |
gctttttatattggagtattgatgcctgacgcaattttttctggtctcatat |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5938805 |
gctttttatattggagtattgatgcctgacgcaattttttctggtctcatat |
5938856 |
T |
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