View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_high_13 (Length: 410)
Name: NF9913A_high_13
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 111 - 387
Target Start/End: Complemental strand, 54424504 - 54424218
Alignment:
| Q |
111 |
cagaaattgaagatttacggaattcttctgacgatgcaagc----------tagccactatgcagagtaaagtagcttctttattgctccaggaagcaac |
200 |
Q |
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||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
54424504 |
cagaaattgaagatttatggaattcttcggacgacgcaagcgatccgcggctagccactatgcagaataaattagcttctttattgctccaggaagcaac |
54424405 |
T |
|
| Q |
201 |
gttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcg |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54424404 |
gttcaaaaatattttggctcgcagacggggacacaaacaacaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcg |
54424305 |
T |
|
| Q |
301 |
tgacaattctggtaattgggttacatcacatgaagacctctgcactctcgttcataattacttcacctctctatttcgagcgcaaca |
387 |
Q |
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| T |
54424304 |
tgacaattctggtaattgggttacatcacatgaagacttctgcactctcgttcataattacttcacctctctatttcgagcacaaca |
54424218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 54424643 - 54424536
Alignment:
| Q |
5 |
aatcaatttgtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcagtcactatattgaagacatttcctcttggagcagaaata |
104 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
54424643 |
aatcaattggtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcaatcactgtattgaagacatttcctcttggagcagaaata |
54424544 |
T |
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| Q |
105 |
tcacgcca |
112 |
Q |
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|||||||| |
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| T |
54424543 |
tcacgcca |
54424536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 193 - 384
Target Start/End: Original strand, 20120444 - 20120635
Alignment:
| Q |
193 |
gaagcaacgttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaag |
292 |
Q |
| |
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|||||| ||||| ||||| ||||||||||| | || ||||||||||||| ||||||||||||||||| | | |||||||| |||||||| ||||| |
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| T |
20120444 |
gaagcagcgttcgaaaattttttggctcgcgaaaggggacacaaacagcagattttttcatgcttcagcatctgtcaggaaaaataaaaatacaataaag |
20120543 |
T |
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| Q |
293 |
aagcttcgtgacaattctggtaattgggttacatcacatgaagacctctgcactctcgttcataattacttcacctctctatttcgagcgca |
384 |
Q |
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| T |
20120544 |
aagctacgtgacagttcagttaattggattacggcgcatgaagacctttgtgctcttgttcataactacttcacctctatattccgagcgca |
20120635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 20120199 - 20120299
Alignment:
| Q |
5 |
aatcaatttgtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcagtcactatattgaagacatttcctcttggagcagaaata |
104 |
Q |
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|||||||| |||||||||||||||||| |||| ||||| || |||||| ||| |||||||| ||||| | | | ||| ||||| |||||||||||||||| |
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| T |
20120199 |
aatcaattggtgaagagcaactgggcccattaccctccatctaatattatcaacaaactcaatcactgtgtcgcagatatttcatcttggagcagaaata |
20120298 |
T |
|
| Q |
105 |
t |
105 |
Q |
| |
|
| |
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| T |
20120299 |
t |
20120299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 30168276 - 30168342
Alignment:
| Q |
192 |
ggaagcaacgttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttttcatgcttc |
258 |
Q |
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||||||| |||||||||||||||||||| | || ||||||| ||||||||| || ||||| ||||| |
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| T |
30168276 |
ggaagcagcgttcaaaaatattttggctatctgagggtgacataaacagcaagttctttcacgcttc |
30168342 |
T |
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