View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_high_15 (Length: 403)
Name: NF9913A_high_15
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 82 - 403
Target Start/End: Original strand, 42608975 - 42609296
Alignment:
| Q |
82 |
ttacattagagtagcacaatcctagcagataggtagaggaacaccattccactcctttagacaatccaacatgggatcaataaaccttccatcacacatt |
181 |
Q |
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| T |
42608975 |
ttacattagagtagcacaatcctagcagataggtagaggaacaccattccactcctttagacaatccaacatgggatcaataaaccttccatcacacatt |
42609074 |
T |
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| Q |
182 |
gctgtgaaaaccttatcacagtcctcaccaggtgacctaattttctcacctgtcagcaaacttgtccctaaagtttctctcatgaacttgtacaatggat |
281 |
Q |
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| T |
42609075 |
gctgtgaaaaccttatcacagtcctcaccaggtgacctaattttctcacctgtcagcaaacttgtccctaaagtttctctcatgaacttgtacaatggat |
42609174 |
T |
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| Q |
282 |
atgatctacattccttgatcatattaggaactgcagggtttccattttcaatttcaaccctagcattttccacctctttaggcaaaagggccttaagctc |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42609175 |
atgatctacattccttgatcatattaggaactgcagggtttccattttcaatttcaaccctagcattttccacctctttaggcaaaagggccttaagctc |
42609274 |
T |
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| Q |
382 |
ttcctcaaaagctccaatcttt |
403 |
Q |
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| T |
42609275 |
ttcctcaaaagctccaatcttt |
42609296 |
T |
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