View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_high_2 (Length: 603)

Name: NF9913A_high_2
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_high_2
NF9913A_high_2
[»] chr7 (3 HSPs)
chr7 (9-495)||(42692923-42693404)
chr7 (426-486)||(10578183-10578243)
chr7 (426-498)||(13017783-13017855)
[»] chr4 (1 HSPs)
chr4 (425-489)||(37173713-37173777)
[»] chr3 (2 HSPs)
chr3 (424-479)||(33374616-33374671)
chr3 (426-486)||(54260099-54260159)
[»] chr6 (2 HSPs)
chr6 (426-486)||(1271404-1271464)
chr6 (426-494)||(10053054-10053122)


Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 9 - 495
Target Start/End: Complemental strand, 42693404 - 42692923
Alignment:
Q  9 gaagaatattccttggatgaccgtatttagtttcaaaactatgatgtatctgcaaatattttgacattcaaattagtaagtgtttaaggtggtgactaga 108  Q
    |||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||     
T  42693404 gaagaaaatttcttggatgaccgtatttggtttcaaaagtatgatgtatctgcaaacattttgacgttcaaattagtaagcgtttaaggtggtgactagg 42693305  T
Q  109 tttaaaatgaagtatacctcgagaattagtgatgaatgacnnnnnnnnngatagaaagtagtgatgaatgacttgtataccctaaaagatgtgtaattga 208  Q
    |||||| |||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42693304 tttaaagtgaagtatacctcgagaattagtgatgaatgacttttttat--atagaaagtagtgatgaatgacttgtatagcctaaaagatgtgtaattga 42693207  T
Q  209 gtttggacaagaatcatgaattaaatttcataataggaggattacggacggtctcaatggaggagtgtggaatgtacatggaccatgatttgctcttgat 308  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693206 gttttgacatgaatcatgaattaaatttcataataggaggattacggacggtctcaatggaggagtgtggaatgtacatggaccatgatttgctcttgat 42693107  T
Q  309 cattcatgacttggttctcccaggtggccccaaggtaagtctatttaatggtttgtcaataaactattgatgtccatttatgggctaagctgtagcatat 408  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  42693106 cattcatgacttggttctccaaggtggccccaaggtaagtctatttaatggtttgtctataaactattgatgtccatttatgggctaagctgtagcttat 42693007  T
Q  409 tctgaagagcaacattattatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtaggttttga 495  Q
    | |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42693006 tttgaagagcaacat---tatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtaagttttga 42692923  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 486
Target Start/End: Complemental strand, 10578243 - 10578183
Alignment:
Q  426 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgt 486  Q
    |||||||||||| |||||| |||||  ||||||| ||||| ||||||||| ||| ||||||    
T  10578243 ttatttgaacaactattttgtaggataatttgtgggacaaccaaaatatagaaagaaatgt 10578183  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 13017783 - 13017855
Alignment:
Q  426 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtaggttttgatac 498  Q
    ||||||||||||  ||||||| | || | ||||| |||||  |||||||||||| |||||||| |||||||||    
T  13017783 ttatttgaacaaccattttatggcacaacttgtgtgacaattaaaatatataaagaaatgtagtttttgatac 13017855  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 37173777 - 37173713
Alignment:
Q  425 attatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtagg 489  Q
    ||||||||||||| |||||  |||||| ||||||| ||||| ||||||| ||| |||||||||||    
T  37173777 attatttgaacaactatttcttaggacaatttgtgggacaaccaaaataaatatataaatgtagg 37173713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 479
Target Start/End: Complemental strand, 33374671 - 33374616
Alignment:
Q  424 tattatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaa 479  Q
    ||||||||||||||  |||||||| ||| |||||||| |||| |||||||||||||    
T  33374671 tattatttgaacaaccattttatatgacaatttgtgaaacaaccaaaatatataaa 33374616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 486
Target Start/End: Original strand, 54260099 - 54260159
Alignment:
Q  426 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgt 486  Q
    |||||||||||| |||||| ||| || ||||||| ||||| ||||||||| ||| ||||||    
T  54260099 ttatttgaacaactattttgtagaacaatttgtgggacaaccaaaatataaaaagaaatgt 54260159  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 486
Target Start/End: Complemental strand, 1271464 - 1271404
Alignment:
Q  426 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgt 486  Q
    |||||||||||| |||||||| |||| ||||||| ||||| || |||||| ||| ||||||    
T  1271464 ttatttgaacaattattttatgggacaatttgtgggacaaccataatatacaaaaaaatgt 1271404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 494
Target Start/End: Original strand, 10053054 - 10053122
Alignment:
Q  426 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtaggttttg 494  Q
    |||||||||||| |||||||| |||  | ||||| |||||  |||||||| ||| ||||||||||||||    
T  10053054 ttatttgaacaactattttattggataacttgtgggacaactaaaatatacaaagaaatgtaggttttg 10053122  T

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