View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_high_27 (Length: 300)
Name: NF9913A_high_27
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 112 - 287
Target Start/End: Complemental strand, 30878002 - 30877827
Alignment:
| Q |
112 |
gttcactgacactgtcattttcatcactatcacactccaaaacaactctgacacagaacaaacacctctccttattccattgtttccaaggttgtctcct |
211 |
Q |
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| T |
30878002 |
gttcactgacactgtcattttcatcactatcacactccaaaacaactctgacacagaacaaacacctctccttattccattgtttccaaggttgtctcct |
30877903 |
T |
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| Q |
212 |
gtgtttggtccccacaaacaactctcctttttcatttctcttttcactttgctatggaaatggaaggttatgatat |
287 |
Q |
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| T |
30877902 |
gtgtttggtccccacaaacaactctcctttttcatttctcttttcactttgctatggaaatggaaggttatgatat |
30877827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 36373472 - 36373392
Alignment:
| Q |
23 |
catcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcacagg |
103 |
Q |
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| T |
36373472 |
catcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcacagg |
36373392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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