View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_high_29 (Length: 291)
Name: NF9913A_high_29
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 42609240 - 42609509
Alignment:
| Q |
1 |
ttttccacctctttaggcaaaagtgccttaagcccttcctcaaaagctccaatcttttggaaaatcgaggtgcttgaatttgcctccttatcaccatttt |
100 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42609240 |
ttttccacctctttaggcaaaagggccttaagctcttcctcaaaagctccaatcttttggaaaatcgaggtgcttgaatttgcctccttatcaccatttt |
42609339 |
T |
|
| Q |
101 |
gcaatgcatgatcaactagtacatatctcagcttctgcattagaggatatatagcactgcaagggtcatcaatgtaagtgaaaacatactcaccttcaac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42609340 |
gcaatgcatgatcaactagtacatatctcagcttctgcattagaggatatataggactgcaagggtcatcaatgtaagtgaaaacatactcaccttcaac |
42609439 |
T |
|
| Q |
201 |
aacattgagtaaatccttctcacaaaaccttgatggatgcaactcaccattgacaccaactgtgagaatt |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42609440 |
aacattgagtaaatccttctcacaaaaccttgatggatgcaactcaccattgacaccaactgttagaatt |
42609509 |
T |
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