View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_high_9 (Length: 438)
Name: NF9913A_high_9
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 21 - 430
Target Start/End: Original strand, 38869215 - 38869630
Alignment:
| Q |
21 |
tcaccttcccaccaagggaaacaaccttcctatcttcaacctttttgcgctctttccatgtcatatgcgagttgcctaagatatattgcaatgagtagcc |
120 |
Q |
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| T |
38869215 |
tcaccttcccaccaagggaaacaaccttcctatcttcaacctttttgcgctctttccatgtcatatgcgagttgcctaagatatattgcaatgagtagcc |
38869314 |
T |
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| Q |
121 |
attataaaaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgt |
220 |
Q |
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| T |
38869315 |
attataaaaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgt |
38869414 |
T |
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| Q |
221 |
acttagcattcaaattcgttcttatcatttaaaatcacaatgcagaaacgtcattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaatg |
320 |
Q |
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| T |
38869415 |
acttagcattcaaattcgttcttatcatttaaaatcataatgcagaaacg-cattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaacg |
38869513 |
T |
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| Q |
321 |
agaagatagacaacattcaatggaaaataattttag-------aaagnnnnnnnnnngagagagaaaatactgaagttttggacgtcttccataatcttc |
413 |
Q |
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| T |
38869514 |
agaagatagacaacattcaatggaaaataattttagaaaaaaaaaaaaaaaaaaaaagagagagaaaatactgaagttttggacgtcttccataatcttc |
38869613 |
T |
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| Q |
414 |
ctgatgtccatctcatt |
430 |
Q |
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| T |
38869614 |
ctgatgtccatttcatt |
38869630 |
T |
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