View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_1 (Length: 881)
Name: NF9913A_low_1
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_1 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 298 - 865
Target Start/End: Original strand, 45260671 - 45261234
Alignment:
| Q |
298 |
gaaattaagttctgagcttatttctcgaaatgagagatcatatatcaggtgggggcagtttcaatgagcatagcacattgcacgtgattcctccttaact |
397 |
Q |
| |
|
|||||| |||||| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45260671 |
gaaattcagttctaagtttatttctcggaatgagagatcatatgccaggtgggggcagtttcaatgagcatagcacattgcacatgattcctccttaact |
45260770 |
T |
|
| Q |
398 |
ataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45260771 |
ataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatttccgtgtaaaacatctctaatatgaagaatgtttggtagca |
45260870 |
T |
|
| Q |
498 |
taagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnnnattt |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
45260871 |
taagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatgaccttttttt----ttt |
45260966 |
T |
|
| Q |
598 |
acaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtgg |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45260967 |
acaaaaatcaagacccatctagatagcatgcaaatcagctaataacgcatcacctccaacttcatagtgagaaaaatcagttatccaatcttcatcgtgg |
45261066 |
T |
|
| Q |
698 |
ttgcgaacaacaccaccaacacacaaagtctacaagaaagcagccatcaacattaagtttcagtccaccttttacagggggacccaatgagccaacatac |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
45261067 |
ttgcgaacaacaccaccaacacacaaagtctacaagaaagcaaccatcaacattaagtttcagtttaccttttgtagggggacccaatgagccaacatac |
45261166 |
T |
|
| Q |
798 |
acgatgagtgcgggtccagttcaagactgggataggttaagtttaggttgagttaaggagttgatgtc |
865 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45261167 |
acgatgagtgcgggtccagttcaagactgggataggttaagtttaggttgagttaaggagttgatgtc |
45261234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 45260086 - 45260224
Alignment:
| Q |
27 |
aaaaaattccttttaaaatcttcacgatggatcattaggacaaaagttagcaagattcatttttattaaacattcactaatgtaattaattacatattta |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45260086 |
aaaaatttccttttaaaatcttcacgatgggtcattaggacaaaagttagcgagattcatttttattaaacattcactaatgtaattaattacatattta |
45260185 |
T |
|
| Q |
127 |
aattatgttaatcgtttcaattattgttgaaatttgtta |
165 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45260186 |
aattatgttaatcgttccaattattgttgaaatttgtta |
45260224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 350 - 719
Target Start/End: Complemental strand, 15243646 - 15243283
Alignment:
| Q |
350 |
gggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgt |
449 |
Q |
| |
|
|||||||| || |||||| ||||| ||||| ||||| | |||||| | ||||||||||||| ||| | ||| ||| |||||||||||| |||| | || | |
|
|
| T |
15243646 |
gggcagttccagtgagcagagcaccttgcatgtgatccttccttagccataaaatatgcacacatgtattgttccctaagaacatgcaccaatgttgttt |
15243547 |
T |
|
| Q |
450 |
tgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattcca |
549 |
Q |
| |
|
| |||| | | |||||||||||||||||| |||| |||| | |||||||||||||||| ||||| ||| |||||| ||||||||| | || | ||| | |
|
|
| T |
15243546 |
tttcattttcatgtaaaacatctctaatatgaaggatgtgag-tagcataagtgtgcaaggtatgatcatgaccatcaataatcaggtcaactacttcaa |
15243448 |
T |
|
| Q |
550 |
agcaattactctcacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatca |
649 |
Q |
| |
|
| |||| ||||| ||||||||||||| ||| || ||||||||| ||||| ||| |||||||| | ||||| ||||||||||||||| |
|
|
| T |
15243447 |
aacaatcactcttacaaataatgttgacataaccttttctac-----tacaaaaattaagacatatcaagatagcacgtaactcggctaataacgcatca |
15243353 |
T |
|
| Q |
650 |
cgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
| ||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
15243352 |
ccttcaacttcatagtgcgaaaaaccagttatccaatctccatcgtggttgagaacaacacctccaacac |
15243283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 362 - 715
Target Start/End: Complemental strand, 12563433 - 12563088
Alignment:
| Q |
362 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
461 |
Q |
| |
|
|||||||||||| ||||| ||||| | |||||||| ||||||| ||||| |||||||| ||| ||| |||||||| |||| | || || |||| ||| | |
|
|
| T |
12563433 |
tgagcatagcaccttgcatgtgatccttccttaaccataaaatctgcacacatatttttttcc-taaaaacatgcaccaatgttgtattttcatttccat |
12563335 |
T |
|
| Q |
462 |
gtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactct |
561 |
Q |
| |
|
||||| ||||||| || |||| |||| |||||||||||||| ||| ||||| ||||||||| ||||||||| | || | |||||| |||| ||||| |
|
|
| T |
12563334 |
gtaaagaatctctattatgaaggatgtc-ggtagcataagtgttcaaagtatgatcacgaccaacaataatcaggtcaactacttccaaacaatcactct |
12563236 |
T |
|
| Q |
562 |
cacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttca |
661 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |||| ||||||| | || | || |||||||||||||| | || ||||| |
|
|
| T |
12563235 |
cacaaataatgttgatatggccttttttac-----tacaaaaatcaagacctatctggatagcacgtaaattagataataacgcatcacctccagcttca |
12563141 |
T |
|
| Q |
662 |
tagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccacca |
715 |
Q |
| |
|
||||||| |||| ||| |||||||||| |||||||||||| |||| ||| |||| |
|
|
| T |
12563140 |
tagtgag-aaaaccagctatccaatctccatcgtggttgcaaacagcactacca |
12563088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 45260519 - 45260609
Alignment:
| Q |
164 |
tatcatttattcacatgatatcacttgttataatcctactatcctagtaacatttctttaaagttgnnnnnnntaaaataaattaatttaa |
254 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45260519 |
tatcatttattcacatgatatcacctgttataatcctactatcctagtaacatttctttaaagttgaaaaaaataaaataaattaatttaa |
45260609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 597 - 716
Target Start/End: Original strand, 28932426 - 28932545
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||| ||||||| |||| ||||||| | ||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
28932426 |
tacaaaaaccaagacctatcttgatagcacgtaactcagctaataacgcatcagcttcagcttcatagtgagaaaaaccaactatccaatctccatcgtg |
28932525 |
T |
|
| Q |
697 |
gttgcgaacaacaccaccaa |
716 |
Q |
| |
|
||| ||||||||| |||||| |
|
|
| T |
28932526 |
gttacgaacaacaacaccaa |
28932545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 629 - 712
Target Start/End: Original strand, 1758839 - 1758922
Alignment:
| Q |
629 |
aactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacacca |
712 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
1758839 |
aactcagctaataacgcatcacctccaacttcatagtgagaaaaaccagctatccaatctccatcgtggttgcgaacaatacca |
1758922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 597 - 715
Target Start/End: Complemental strand, 23589865 - 23589747
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
||||||||| ||| | |||| ||||||| | |||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
23589865 |
tacaaaaataaagttctatctggatagcacgtaactcagctaataacgcatcacctccaacttcatagtgggaaaactcagttatccaatctctatcgta |
23589766 |
T |
|
| Q |
697 |
gttgcgaacaacaccacca |
715 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
23589765 |
gttacgaacaacaccacca |
23589747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 597 - 715
Target Start/End: Complemental strand, 23810470 - 23810352
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||||||||||| ||| ||||||| | ||||||||||| |||||| ||| | ||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
23810470 |
tacaaaaatcaagacctttctggatagcacgtaactcagctaacaacgcaccacctccaacttcatagtgggaaaactcagttatccaatctctatcgta |
23810371 |
T |
|
| Q |
697 |
gttgcgaacaacaccacca |
715 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
23810370 |
gttacgaacaacaccacca |
23810352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 389 - 575
Target Start/End: Original strand, 1758615 - 1758800
Alignment:
| Q |
389 |
tccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgt |
488 |
Q |
| |
|
|||||| | ||||||| ||||| |||||||| || ||||||||||||||||| | || || ||| | | |||||| ||||||||||| |||| |||| |
|
|
| T |
1758615 |
tccttagccataaaatctgcacatatattttgtcccctaagaacatgcatcaatgttgtatttccattttcatgtaaatcatctctaatatgaaggatgt |
1758714 |
T |
|
| Q |
489 |
ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttg |
575 |
Q |
| |
|
| | | |||||||||||||| ||||| |||| || | ||||||||| | || || |||||| |||| ||||||||||||||||||| |
|
|
| T |
1758715 |
tag-tggcataagtgtgcaaggtatgatcacaactagcaataatcaggtcaattgcttccaaacaatcactctcacaaataatgttg |
1758800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 350 - 706
Target Start/End: Complemental strand, 12608105 - 12607756
Alignment:
| Q |
350 |
gggcagtttcaatgagcatagcacattgcac--gtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagt |
447 |
Q |
| |
|
|||||||| ||||||||| ||||| || || ||||| | |||||| | ||||||| ||||| ||||||||| ||| || ||||||||| |||| | || |
|
|
| T |
12608105 |
gggcagttccaatgagcagagcaccttttacatgtgatccttccttagccataaaatctgcacacatattttgttccttatgaacatgcaccaatgttgt |
12608006 |
T |
|
| Q |
448 |
gttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattc |
547 |
Q |
| |
|
|| ||| ||| |||||| ||||||||||| |||| |||| | |||||||||||||||| |||| | |||||||| ||||||||| | | || ||| |
|
|
| T |
12608005 |
atttccatttccatgtaaaccatctctaatatgaaggatgtcag-tagcataagtgtgcaagatatgattacgaccatcaataatcaggtctactgcttc |
12607907 |
T |
|
| Q |
548 |
caagcaattactctcacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcat |
647 |
Q |
| |
|
||| |||| |||| ||||||||||||| ||| | ||||||||||||||| |||| |||||| | ||||| | ||||||| ||| |
|
|
| T |
12607906 |
caaacaatcactc--acaaataatgttgacataacttttttac------tacaaaaatcaagacatatctgcatagcacgtaactcggttaataacacat |
12607815 |
T |
|
| Q |
648 |
cacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaaca |
706 |
Q |
| |
|
|| | |||||||||| ||||||||| ||| |||||||||| |||||||||| |||||| |
|
|
| T |
12607814 |
catttccaacttcataatgagaaaaaccagctatccaatctccatcgtggttacgaaca |
12607756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 492 - 575
Target Start/End: Original strand, 28932326 - 28932409
Alignment:
| Q |
492 |
gtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttg |
575 |
Q |
| |
|
|||| |||||||||||| ||||| ||||| ||| ||||||||| | || || |||||| |||| ||||||||||||||||||| |
|
|
| T |
28932326 |
gtagtataagtgtgcaaggtatgatcacggccagcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttg |
28932409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 32826285 - 32826347
Alignment:
| Q |
426 |
taagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgt |
488 |
Q |
| |
|
|||||| ||||| |||| |||||||||||| | | |||||| |||||| |||||||||||||| |
|
|
| T |
32826285 |
taagaagatgcaccaatgtagtgttgtcattttcatgtaaagcatctccaatacgaagaatgt |
32826347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 4e-53; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 375 - 715
Target Start/End: Original strand, 41940534 - 41940866
Alignment:
| Q |
375 |
ttgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctct |
474 |
Q |
| |
|
||||| ||||| | |||||| | ||||||| ||||| |||||||| ||| ||||||||||||||||| | || || ||| ||| |||||||||||||| |
|
|
| T |
41940534 |
ttgcatgtgatccttccttagccataaaatttgcac--atattttgttccctaagaacatgcatcaatgttgtattaccatttccatgtaaaacatctct |
41940631 |
T |
|
| Q |
475 |
aatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgtt |
574 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||| ||||| |||||||| | ||||||||| | || || || ||| |||| |||||||||||||||||| |
|
|
| T |
41940632 |
aatatgaaggatgtc-ggtagcataagtgtgcaaggtatgatcacgaccgtcaataatcaggtcaactgctttcaaacaatcactctcacaaataatgtt |
41940730 |
T |
|
| Q |
575 |
gtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaat |
674 |
Q |
| |
|
| ||| ||| | ||||||||||||||||| || ||||||| | |||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
41940731 |
gacatagcctttta-----aattacaaaaatcaagacctattctgatagcacgtaactcagctaataacgcatcacctccagcttcatagtgagaaaaac |
41940825 |
T |
|
| Q |
675 |
cagttatccaatcttcatcgtggttgcgaacaacaccacca |
715 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
41940826 |
cagctatccaatctccatcgtggttgcgaacaccaccacca |
41940866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 597 - 719
Target Start/End: Complemental strand, 50945877 - 50945755
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||||||||||| |||| |||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
50945877 |
tacaaaaatcaagacctatctggatagcgcgtaactcagctaataacgcatcaccttcagcttcatagtgagaaaaatcagctatccaatctccatcatg |
50945778 |
T |
|
| Q |
697 |
gttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
50945777 |
gttgtgaacaacaccaccaacac |
50945755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 362 - 574
Target Start/End: Original strand, 27184739 - 27184955
Alignment:
| Q |
362 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
461 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | ||||||||| || ||||||||| ||| || |||||||||| ||| | || || ||| | | | |
|
|
| T |
27184739 |
tgagcagagcacattgcacgtgatccttccttagccataaaatatacatacatattttgttccctatgaacatgcattaatgttgtattaccattttcat |
27184838 |
T |
|
| Q |
462 |
gtaaaacatctctaatacgaagaatgt----ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaatta |
557 |
Q |
| |
|
||||||||||||||||| |||| |||| | |||||||| |||||||| ||||| |||||||||| |||||||| | || || |||||| |||| | |
|
|
| T |
27184839 |
gtaaaacatctctaatatgaaggatgtcatgtcagtagcatatgtgtgcaaggtatgatcacgaccatcaataatcaagtcaactgcttccaaacaatca |
27184938 |
T |
|
| Q |
558 |
ctctcacaaataatgtt |
574 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27184939 |
ttctcacaaataatgtt |
27184955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 461 - 832
Target Start/End: Original strand, 47924343 - 47924717
Alignment:
| Q |
461 |
tgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactc |
560 |
Q |
| |
|
||||||||||||| |||| |||| |||| | |||||||||||||||| ||||| ||| || ||| ||||||||| | || || |||||| |||| |||| |
|
|
| T |
47924343 |
tgtaaaacatctcgaatatgaaggatgtcag-tagcataagtgtgcaaggtatgatcatgatcatcaataatcaggtcaactgcttccaaacaatcactc |
47924441 |
T |
|
| Q |
561 |
tcacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttc |
660 |
Q |
| |
|
||||||||||||||| | | || |||||||||||||||| ||| ||||||| | || ||||||||||| ||||||| | ||||||| |
|
|
| T |
47924442 |
tcacaaataatgttgacttaaccttttttac-----tacaaaaatcaagacctatccggatagcacgtaattcagctaataatgcatcacctccaacttc |
47924536 |
T |
|
| Q |
661 |
atagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac--------acaaagtctacaagaaagcagccatcaacatta |
752 |
Q |
| |
|
|||||| |||||| ||| ||||||||| ||| || | | ||||||||||| ||||||| |||| ||| | ||||||| |||||||| ||| |
|
|
| T |
47924537 |
atagtgtgaaaaaccagcaatccaatctccattgtcgctacgaacaacaccgccaacacctaaacaaccaaaatcttctagaaagctgccatcaatattg |
47924636 |
T |
|
| Q |
753 |
agtttcagtccaccttttaca-gggggacccaatgagccaacatacacgatgagtgcgggtccagttcaagactgggatag |
832 |
Q |
| |
|
||||| ||| ||||| || | |||||| ||||||||| || | |||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
47924637 |
agtttaagtgtaccttctagaggggggatccaatgagctaaaagacacgatgagtgtgggtccaaaccaagattgggatag |
47924717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 362 - 574
Target Start/End: Original strand, 40656118 - 40656329
Alignment:
| Q |
362 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
461 |
Q |
| |
|
|||||||||||| | ||| |||||| |||||| ||||||| ||||| ||||||||| || | |||||||||| |||| | || || ||| ||| | |
|
|
| T |
40656118 |
tgagcatagcacctcgcatatgattcttccttagtcataaaatctgcacacatattttgttctcttagaacatgcaccaatgtcgtatttccatttccat |
40656217 |
T |
|
| Q |
462 |
gtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactct |
561 |
Q |
| |
|
||||||||||||| ||| ||| ||||| | ||| |||||||||||| ||||| ||||||||| ||||||||| | || || || ||| |||| ||||| |
|
|
| T |
40656218 |
gtaaaacatctctgatatgaaatatgttag-tagtataagtgtgcaaggtatgatcacgaccagcaataatcaggtcaactgctttcaaacaatcactct |
40656316 |
T |
|
| Q |
562 |
cacaaataatgtt |
574 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40656317 |
cacaaataatgtt |
40656329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 25969860 - 25969773
Alignment:
| Q |
396 |
ctataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaag |
483 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||||| |||| | || || |||| ||| |||||||||||||||||| |||| |
|
|
| T |
25969860 |
ctataaaatatgcacacatattttgttccttaagaacatgcaccaatgttgtattttcatttccatgtaaaacatctctaatatgaag |
25969773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 600 - 715
Target Start/End: Complemental strand, 54259293 - 54259179
Alignment:
| Q |
600 |
aaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggtt |
699 |
Q |
| |
|
||||||||||||| |||| ||||||| | ||||||||||| ||| |||||| | || || |||||||||||||| ||| |||||| ||| || |||||| |
|
|
| T |
54259293 |
aaaaatcaagacctatctggatagcacgtaactcagctaacaacccatcacctccagct-catagtgagaaaaaccagctatccattctccaatgtggtt |
54259195 |
T |
|
| Q |
700 |
gcgaacaacaccacca |
715 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
54259194 |
gcgaacaataccacca |
54259179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 597 - 713
Target Start/End: Original strand, 40656348 - 40656463
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
||||||||||||||| || | |||| || | ||||||||||||||||||||| | ||||||| |||| |||||| ||||||| |||||| || ||| |
|
|
| T |
40656348 |
tacaaaaatcaagacatatatggataacacgttactcagctaataacgcatcacttctaacttcacagtg-gaaaaaccagttattcaatctctattgtg |
40656446 |
T |
|
| Q |
697 |
gttgcgaacaacaccac |
713 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40656447 |
gttgcgaacaacaccac |
40656463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 712
Target Start/End: Complemental strand, 25969430 - 25969315
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||||||||||| |||| ||||| | | |||||| |||||| | ||| | | | ||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
25969430 |
tacaaaaatcaagacctatctggatagtacgtaactcaactaatagcacatggcttcgagcttcatagtgagaaaaaccaactatccaatctccatcgtg |
25969331 |
T |
|
| Q |
697 |
gttgcgaacaacacca |
712 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25969330 |
attgcgaacaacacca |
25969315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 598 - 719
Target Start/End: Complemental strand, 24015954 - 24015833
Alignment:
| Q |
598 |
acaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtgg |
697 |
Q |
| |
|
|||||||||||||| ||| | ||| || |||||||| | || || ||||||| | |||||||||| |||||| || | ||| |||||| |||||||| |
|
|
| T |
24015954 |
acaaaaatcaagacacatttcaataacacgcaactcaaccaacaatgcatcacctccaacttcatatgaagaaaagtcggctattcaatctccatcgtgg |
24015855 |
T |
|
| Q |
698 |
ttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
24015854 |
ttgcgaacaaccccaccaacac |
24015833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 381 - 488
Target Start/End: Original strand, 29969133 - 29969240
Alignment:
| Q |
381 |
gtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacg |
480 |
Q |
| |
|
||||| ||| |||| | ||||||||| || ||| |||||||| |||||| |||||||||||||||||| |||| || |||||| | |||||||||| | |
|
|
| T |
29969133 |
gtgatcccttcttagccataaaatattaacacatgttttgctctttaagaatatgcatcaatatagtgttatcatttctgtgtaagatatctctaatatg |
29969232 |
T |
|
| Q |
481 |
aagaatgt |
488 |
Q |
| |
|
||| |||| |
|
|
| T |
29969233 |
aaggatgt |
29969240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 354 - 477
Target Start/End: Complemental strand, 50946116 - 50945993
Alignment:
| Q |
354 |
agtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtc |
453 |
Q |
| |
|
||||||| |||||| |||| ||||| ||||| | |||||| | ||||||| | ||||||||||||| || ||| ||||||||||||| | || || || |
|
|
| T |
50946116 |
agtttcagtgagcagagcatcttgcatgtgatccttccttagcaataaaatctacacgcatattttgttctctaaaaacatgcatcaatgttgtattttc |
50946017 |
T |
|
| Q |
454 |
atctccgtgtaaaacatctctaat |
477 |
Q |
| |
|
|| | | ||||||||||||||||| |
|
|
| T |
50946016 |
attttcatgtaaaacatctctaat |
50945993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 362 - 715
Target Start/End: Complemental strand, 4653836 - 4653488
Alignment:
| Q |
362 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
461 |
Q |
| |
|
|||||| ||||| ||| | ||||| | |||||| | ||||||| ||||| ||||||||| || || |||||||| | ||||||||| || ||| ||| | |
|
|
| T |
4653836 |
tgagcagagcaccttgtatgtgatccttccttagccataaaatttgcacacatattttgttctatgagaacatgtaccaatatagtatttccatttccat |
4653737 |
T |
|
| Q |
462 |
gtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactct |
561 |
Q |
| |
|
||| | ||||| ||||| ||| ||||| | ||||||||||||| || ||||| |||||||||| ||||||||| | || || |||||| |||| ||||| |
|
|
| T |
4653736 |
gtagagcatctttaatatgaaagatgttag-tagcataagtgtgtaaggtatgatcacgaccatcaataatcaggtcaactgcttccaaacaatcactct |
4653638 |
T |
|
| Q |
562 |
cacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttca |
661 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||||| |||| ||||||| | |||||| ||| ||||||||||| | || ||||| |
|
|
| T |
4653637 |
cacaaataatgttaacatagccttttattac----tacaaaaatcaagacctatctggatagcacgtaactcacctagtaacgcatcacctccagcttca |
4653542 |
T |
|
| Q |
662 |
tagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccacca |
715 |
Q |
| |
|
| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4653541 |
tggtgagaaaaatcagctatccaatctccatcgtggttgcgaacaacaccacca |
4653488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 375 - 715
Target Start/End: Complemental strand, 44440564 - 44440230
Alignment:
| Q |
375 |
ttgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctct |
474 |
Q |
| |
|
||||| ||||| | |||||||| ||||||| ||||| ||||||||| ||| |||||||||||| |||| | || || |||| | | |||||||||||||| |
|
|
| T |
44440564 |
ttgcatgtgatccttccttaaccataaaatctgcacacatattttgttccctaagaacatgcaccaatgttgtattttcattttcatgtaaaacatctct |
44440465 |
T |
|
| Q |
475 |
aatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgtt |
574 |
Q |
| |
|
|||| |||| ||| || ||||||||||||||||| ||||| |||||||||| |||||| | | || |||||| |||| |||||||||||||||||| |
|
|
| T |
44440464 |
aatatgaaggatg-ttagtagcataagtgtgcaaggtatgatcacgaccatcaataattgagtcatctgcttccaaacaatcactctcacaaataatgtt |
44440366 |
T |
|
| Q |
575 |
gtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaat |
674 |
Q |
| |
|
| ||| ||| ||||||||||||||| |||| ||| || ||||| |||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
44440365 |
gacatagccttttttac-----tacaaaaatcaagacatatctgaataacacataactctgctaataacgtatcacatacaacttcatagtgagaaaaac |
44440271 |
T |
|
| Q |
675 |
cagttatccaatcttcatcgtggttgcgaacaacaccacca |
715 |
Q |
| |
|
||| || | ||||| ||||||||||||||||||| |||||| |
|
|
| T |
44440270 |
cagctacctaatctccatcgtggttgcgaacaacgccacca |
44440230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 600 - 715
Target Start/End: Original strand, 8271329 - 8271444
Alignment:
| Q |
600 |
aaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggtt |
699 |
Q |
| |
|
||||||||||||| || | |||| | | |||||||||||||||||||||| | |||||||||| ||||||||| ||| |||||||||| |||||||||| |
|
|
| T |
8271329 |
aaaaatcaagacctatttggataacgcgtaactcagctaataacgcatcacctccaacttcataatgagaaaaaccagctatccaatctccatcgtggtt |
8271428 |
T |
|
| Q |
700 |
gcgaacaacaccacca |
715 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8271429 |
gcgaacaacaccacca |
8271444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 461 - 719
Target Start/End: Complemental strand, 37193062 - 37192809
Alignment:
| Q |
461 |
tgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactc |
560 |
Q |
| |
|
|||||||||||||||||| |||| |||| | |||||||| ||||||| |||| |||||||||| ||||||||| |||| || |||||| |||| ||| |
|
|
| T |
37193062 |
tgtaaaacatctctaatatgaaggatgtaag-tagcataaatgtgcaagatatgatcacgaccatcaataatcaggttaactgtttccaaacaatcactt |
37192964 |
T |
|
| Q |
561 |
tcacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttc |
660 |
Q |
| |
|
||| ||||||||||| || | |||||||||||| || |||| |||| || | ||||||| |||||||| ||||| | ||| ||| |
|
|
| T |
37192963 |
tcaaaaataatgttgaca----caaaccttttagactacaaaaatcaaaacttatctggatatcacgtaactcagttaataacgtatcacctccaatttc |
37192868 |
T |
|
| Q |
661 |
atagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37192867 |
atagtgagaaaaattagttatccaatcaccatcgtggttgcgaacaacaccaccaacac |
37192809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 600 - 715
Target Start/End: Original strand, 6571233 - 6571348
Alignment:
| Q |
600 |
aaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggtt |
699 |
Q |
| |
|
||||||||||||| || | ||||||| ||||||||||| |||||||||| | || ||||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
6571233 |
aaaaatcaagacctatttggatagcacataactcagctaacaacgcatcacctccagcttcatagtgagaaaaatcagccacccaatctccatcgtggtt |
6571332 |
T |
|
| Q |
700 |
gcgaacaacaccacca |
715 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6571333 |
gcgaacaacaccacca |
6571348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 398 - 575
Target Start/End: Original strand, 45036061 - 45036237
Alignment:
| Q |
398 |
ataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagca |
497 |
Q |
| |
|
||||||| ||||| ||| ||||| ||| |||||||||||| ||| | || || |||| | | |||||||||||||||||| |||| |||| | ||||| |
|
|
| T |
45036061 |
ataaaatttgcacacatgttttgttccctaagaacatgcactaatgttgtattttcattttcatgtaaaacatctctaatatgaaggatgtcag-tagca |
45036159 |
T |
|
| Q |
498 |
taagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttg |
575 |
Q |
| |
|
||||||||||| ||||| ||| ||||| ||||||||| | || || |||||| |||| ||||||||||||||||||| |
|
|
| T |
45036160 |
taagtgtgcaaggtatgatcatcaccatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttg |
45036237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 575
Target Start/End: Original strand, 8271094 - 8271308
Alignment:
| Q |
362 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgt--catctcc |
459 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||| | ||||||| |||| ||||||||| ||| |||||||||| | || | | |||| | ||| | | |
|
|
| T |
8271094 |
tgagcatagcatcttgcatgtgattcttccttagccataaaatctgcatacatattttgttccctaagaacatgaaccactgttgtgtatttccattttc |
8271193 |
T |
|
| Q |
460 |
gtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattact |
559 |
Q |
| |
|
|||||| ||||||||||| |||| | || | || ||||||||||||| ||||| |||| |||| | ||||||| | || || |||||| |||| ||| |
|
|
| T |
8271194 |
atgtaaagcatctctaatatgaaggacgtcag-taacataagtgtgcaaggtatgatcacaaccagcagtaatcaggtcaactgcttccaaacaatcact |
8271292 |
T |
|
| Q |
560 |
ctcacaaataatgttg |
575 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8271293 |
ctcacaaataatgttg |
8271308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 8e-45; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 297 - 715
Target Start/End: Complemental strand, 11076067 - 11075654
Alignment:
| Q |
297 |
tgaaattaagttctgagcttatttctcgaaatgagagatcatatatcaggtgg-gggcagtttcaatgagcatagcacattgcacgtgattcctccttaa |
395 |
Q |
| |
|
|||||||||||| | ||||||| |||| |||||||||| || |||| || |||||||| ||||||||| || || ||||| ||||||| |||||| |
|
|
| T |
11076067 |
tgaaattaagttttaagcttatctctcagaatgagagatttcatttcagacggagggcagttccaatgagcagagtactttgcatgtgattcttccttag |
11075968 |
T |
|
| Q |
396 |
ctataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtag |
495 |
Q |
| |
|
| |||||| | ||| ||||||||| || || ||||||||| |||| | || || ||| | | |||||| ||||| ||||| |||| ||||| | ||| |
|
|
| T |
11075967 |
ccataaaacctacacacatattttgttcgttaggaacatgcaccaatgttgtatttccattttcatgtaaagcatctttaatatgaaggatgttag-tag |
11075869 |
T |
|
| Q |
496 |
cataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnnnat |
595 |
Q |
| |
|
||||||||||||| ||||| ||||||| | |||||||| | || || |||||| |||| ||||||||||||||||||| ||| ||| | |
|
|
| T |
11075868 |
cataagtgtgcaaggtatgatcacgacaagcaataatcaagtcaactgcttccaaacaatcactctcacaaataatgttgacatagccttttt-----aa |
11075774 |
T |
|
| Q |
596 |
ttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgt |
695 |
Q |
| |
|
|||||||||||||||| |||| ||||||| | |||||||||||||||||||||| | || |||||||||| |||||| |||||||| ||||| ||||| |
|
|
| T |
11075773 |
ctacaaaaatcaagacctatctggatagcacgtaactcagctaataacgcatcacctccagcttcatagtgggaaaaaccagttatctaatctctatcgt |
11075674 |
T |
|
| Q |
696 |
ggttgcgaacaacaccacca |
715 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11075673 |
ggttgcgaacaacaccacca |
11075654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 350 - 712
Target Start/End: Original strand, 16824064 - 16824419
Alignment:
| Q |
350 |
gggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgt |
449 |
Q |
| |
|
|||||||| || |||||| ||||| ||||| ||||| | | |||| | ||||||| || || ||||||||| ||| ||||||||||| |||| | || | |
|
|
| T |
16824064 |
gggcagttccattgagcagagcaccttgcatgtgatcctttcttagccataaaatttgtacacatattttgttccctaagaacatgcgccaatgttgtat |
16824163 |
T |
|
| Q |
450 |
tgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattcca |
549 |
Q |
| |
|
| |||| | | |||||| ||||||||||| |||| |||| | |||||||||||||||| ||||| || |||||| ||||||||| | || || ||||| |
|
|
| T |
16824164 |
tttcattttcatgtaaagcatctctaatatgaaggatgtcag-tagcataagtgtgcaaagtatgatctcgaccagcaataatcaggtcaactgcttcca |
16824262 |
T |
|
| Q |
550 |
agcaattactctcacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatca |
649 |
Q |
| |
|
| ||| ||||||||||||||||||| ||| || || |||||||||||| ||| |||| || | ||||||||||||||||||||| |
|
|
| T |
16824263 |
aacaac-actctcacaaataatgttgacataaccttttttac-----tataaaaatcaagacatatcaggataacacgtaactcagctaataacgcatca |
16824356 |
T |
|
| Q |
650 |
cgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacacca |
712 |
Q |
| |
|
| | | |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
16824357 |
cctcccgcttcatagtgagaaaaatcagttatccaatctccattgtggttgcgaacaacacca |
16824419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 389 - 718
Target Start/End: Original strand, 39997500 - 39997823
Alignment:
| Q |
389 |
tccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgt |
488 |
Q |
| |
|
|||||| | ||||||| ||||| ||||||||||||| ||||||||||||||||| | ||||| || || || ||| ||||||||||| || |||||| |
|
|
| T |
39997500 |
tccttagccataaaatttgcacacatattttgctccctaagaacatgcatcaatgttgtgtttctattcccatggaaagcatctctaatatgatgaatgt |
39997599 |
T |
|
| Q |
489 |
ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnn |
588 |
Q |
| |
|
| |||||||||| ||||| ||||| ||||||||| ||||||||| | || || || ||| |||| ||||||| ||||||||||| ||| || |
|
|
| T |
39997600 |
aag-tagcataagtttgcaaggtatgatcacgaccagcaataatcaggtcaactgctttcaaacaatcactctcataaataatgttggcataaccttttt |
39997698 |
T |
|
| Q |
589 |
nnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatct |
688 |
Q |
| |
|
|||||||||||||||| ||| ||||||| | |||||||| ||||| |||||| | |||||| |||||||||||| ||| ||||| |||| |
|
|
| T |
39997699 |
tac-----tacaaaaatcaagacctgtctggatagcacgtcactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatct |
39997793 |
T |
|
| Q |
689 |
tcatcgtggttgcgaacaacaccaccaaca |
718 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39997794 |
gcatcgtggttgcgaacaacaccaccaaca |
39997823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 415 - 699
Target Start/End: Complemental strand, 9427824 - 9427547
Alignment:
| Q |
415 |
attttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatg |
514 |
Q |
| |
|
|||||| ||| ||||||||||| |||| | || || ||| ||| |||||||||||||||||| |||| |||| | ||| |||| ||||||| ||||| |
|
|
| T |
9427824 |
attttgttccctaagaacatgcgccaatcttgtattaccatttccatgtaaaacatctctaatatgaaggatgtcag-tagtataaatgtgcaaggtatg |
9427726 |
T |
|
| Q |
515 |
ttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagaccca |
614 |
Q |
| |
|
|||||||||| | ||| || | || ||| ||||| |||| ||||||||||||||||||| ||| || |||||||||||||||| | |
|
|
| T |
9427725 |
atcacgaccatcagtaagcatgtcaactgaatccaaacaatcactctcacaaataatgttggcatagcattttagac-----tacaaaaatcaagaccta |
9427631 |
T |
|
| Q |
615 |
tctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggtt |
699 |
Q |
| |
|
||| |||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
9427630 |
tctgaatagcacggaactcagctaataacgcatcacct-caacttcatagtgagaaaaatcagttattcaatctccatcgtggtt |
9427547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 598 - 757
Target Start/End: Complemental strand, 26479492 - 26479333
Alignment:
| Q |
598 |
acaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtgg |
697 |
Q |
| |
|
|||||||||||||| || || |||||| ||| ||||||||||| |||||||| | ||||||||||||| |||||| ||| |||| ||||| ||| ||| |
|
|
| T |
26479492 |
acaaaaatcaagacatatataaatagcacgcagctcagctaatagcgcatcacctccaacttcatagtgcgaaaaaccagctatcaaatctccataatgg |
26479393 |
T |
|
| Q |
698 |
ttgcgaacaacaccaccaacacacaaagtctacaagaaagcagccatcaacattaagttt |
757 |
Q |
| |
|
||| |||||||||||||||||| || ||||| | || |||| ||||||| ||||||||| |
|
|
| T |
26479392 |
ttgtgaacaacaccaccaacacccagagtcttctagcaagctaccatcaatattaagttt |
26479333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 383 - 719
Target Start/End: Original strand, 3620874 - 3621202
Alignment:
| Q |
383 |
gattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaa |
482 |
Q |
| |
|
|||||||||||| | ||||||| || || ||| ||||| || |||||||||||| ||| ||||||| |||| ||| ||||||| |||||||||| ||| |
|
|
| T |
3620874 |
gattcctccttagccataaaatttgtacacatgttttgttctctaagaacatgcactaatgtagtgttatcatttccatgtaaaatatctctaatatgaa |
3620973 |
T |
|
| Q |
483 |
gaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggc |
582 |
Q |
| |
|
| |||| | || ||||||| || || ||||| ||||||||| || || || || ||| | |||||||||| |||||||||||||||||||| || || |
|
|
| T |
3620974 |
ggatgtcag-taacataagtatgtaaggtatgatcacgaccaacaacaaacatctcaaacgcttccaagcaaccactctcacaaataatgttgttatagc |
3621072 |
T |
|
| Q |
583 |
cnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatc |
682 |
Q |
| |
|
| ||||||||||||| |||||| |||||| |||||||||| || || |||||| |||||||| | || ||||||| ||| |||| |
|
|
| T |
3621073 |
ctttgttgcg-----acaaaaatcaagatccatctgaatagcacgcaactcagccaa--acacatcaccttcaactttaaagcaagaaaaaccagctatc |
3621165 |
T |
|
| Q |
683 |
caatcttcatcgtggttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
3621166 |
caatctccatcgtggttgggaacaccaccaccaacac |
3621202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 597 - 715
Target Start/End: Complemental strand, 8266674 - 8266556
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||||||||||| |||| ||||| | | |||||||||||||| ||| ||| | |||||||||||||||||||| ||||||| ||||| | ||||| |
|
|
| T |
8266674 |
tacaaaaatcaagacctatctggatagtacgtaactcagctaataatgcaccacctccaacttcatagtgagaaaaactagttatcgaatctccgtcgtg |
8266575 |
T |
|
| Q |
697 |
gttgcgaacaacaccacca |
715 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
8266574 |
gttgcgcacaacaccacca |
8266556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 597 - 715
Target Start/End: Complemental strand, 2887480 - 2887362
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||||||||||| || | |||| || | ||| |||||||||||||||||| | || | ||||||||||||||| ||| ||| |||||| |||||| |
|
|
| T |
2887480 |
tacaaaaatcaagacctatttggatatcacgtaacgcagctaataacgcatcacctccagcatcatagtgagaaaaaccagctattcaatctctatcgtg |
2887381 |
T |
|
| Q |
697 |
gttgcgaacaacaccacca |
715 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2887380 |
gttgcgaacaacaccacca |
2887362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 684
Target Start/End: Complemental strand, 18565879 - 18565693
Alignment:
| Q |
493 |
tagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnn |
592 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| | || | || ||| |||| ||||||||||||||||||| || | | |
|
|
| T |
18565879 |
tagcataagtgtgcaatgtataatcacgaccatcaataatcaggtcaactactttcaaacaatcactctcacaaataatgttgagatagtcttttggac- |
18565781 |
T |
|
| Q |
593 |
natttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatcca |
684 |
Q |
| |
|
|||||||||| |||| |||| ||||||| | ||||||||||||||| |||||| | || ||||||||||| ||||||||| |||||| |
|
|
| T |
18565780 |
----tacaaaaatcgagactaatctggatagcacgtaactcagctaataacacatcacctccagcttcatagtgaaaaaaatcagctatcca |
18565693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 7859500 - 7859398
Alignment:
| Q |
343 |
caggtgggggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaat |
442 |
Q |
| |
|
|||||||| |||||| ||| ||||| || || ||||| ||| |||||||||| | ||||| | ||||| ||||||||| | | |||||||||||| |||| |
|
|
| T |
7859500 |
caggtgggagcagttccaacgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcttaagaacatgcaccaat |
7859401 |
T |
|
| Q |
443 |
ata |
445 |
Q |
| |
|
||| |
|
|
| T |
7859400 |
ata |
7859398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 579
Target Start/End: Complemental strand, 26479557 - 26479506
Alignment:
| Q |
528 |
ataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcat |
579 |
Q |
| |
|
|||||||||| || ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
26479557 |
ataatcagctcaactgattccaaacaatcactctcacaaataatattgtcat |
26479506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 353 - 719
Target Start/End: Original strand, 54724 - 55084
Alignment:
| Q |
353 |
cagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgt |
452 |
Q |
| |
|
||||| || |||||| ||||| ||||| ||||||| |||||| | ||||| | ||||| ||||||||| ||| ||| |||||||| |||| | || || |
|
|
| T |
54724 |
cagttccagtgagcagagcaccttgcatgtgattcttccttagccataaagtctgcacacatattttgttccctaaaaacatgcaacaatgttgtattac |
54823 |
T |
|
| Q |
453 |
catctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagc |
552 |
Q |
| |
|
||| ||| |||||||||||||||||| |||| |||| | | ||||| ||||||| ||||| |||||||||| ||||||||| | | | |||||| | |
|
|
| T |
54824 |
catttccatgtaaaacatctctaatatgaaggatgtcagcaa-cataaatgtgcaaggtatgatcacgaccatcaataatcaggtcacctacttccaaac |
54922 |
T |
|
| Q |
553 |
aattactctcacaaataatgttgtcatggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgt |
652 |
Q |
| |
|
||| |||||||||||||||||| ||| ||| |||||||||||||||| |||| ||| || | ||||||||||||||| ||||| | |
|
|
| T |
54923 |
aatcactctcacaaataatgttcacatagcctttcagac-----tacaaaaatcaagacctatctgaataacacgtaactcagctaataacaaatcacct |
55017 |
T |
|
| Q |
653 |
tcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
55018 |
ccagcttcatagtgagaaaaaccagctatccaatctccatcgtgattgcaaacaacaccaccaacac |
55084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 352 - 719
Target Start/End: Original strand, 7320138 - 7320496
Alignment:
| Q |
352 |
gcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttg |
451 |
Q |
| |
|
|||||||||||||||| | ||| ||||| | ||| | | |||| | ||||||| ||||| ||||||||| ||| ||||| |||||| |||||| || || |
|
|
| T |
7320138 |
gcagtttcaatgagcagatcaccttgcatgagatcctttcttagccataaaatctgcacacatattttgttcc-taagagcatgcaccaatattgtattt |
7320236 |
T |
|
| Q |
452 |
tcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaag |
551 |
Q |
| |
|
||| ||| |||||| || |||||||| |||| |||| | |||||||||||||||||||||| ||||| ||| |||||||| | | | |||||| |
|
|
| T |
7320237 |
ccatttccatgtaaagcaactctaatatgaaggatgtc-gatagcataagtgtgcaatgtatgatcacg-ccaacaataatcaagtctagttcttccaaa |
7320334 |
T |
|
| Q |
552 |
caattactctcacaaataatgttgtca-tggccnnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcac |
650 |
Q |
| |
|
|||| |||||||| |||||||||| || || || |||||||||||||||| ||| ||||||| | || ||||||||||||||||||| |
|
|
| T |
7320335 |
caatcactctcactaataatgttgacaatgtccttttac-------tacaaaaatcaagacctgtctggatagcacgtaattcagctaataacgcatcac |
7320427 |
T |
|
| Q |
651 |
gttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
| || ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
7320428 |
ctccagcttcatagtgagaaaaaccagttatccagtctccatcgtggttgcgaacaacaccaccaacac |
7320496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 364 - 573
Target Start/End: Complemental strand, 17508867 - 17508659
Alignment:
| Q |
364 |
agcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgt |
463 |
Q |
| |
|
|||| ||||| ||||| ||||| | |||| |||||||||||||||| ||||||||| ||| |||||||||||| |||| | || || | | | | ||| |
|
|
| T |
17508867 |
agcagagcaccttgcatgtgatccttcctaaactataaaatatgcaaacatattttgttccctaagaacatgcaccaatgttgtattaccgttttcatgt |
17508768 |
T |
|
| Q |
464 |
aaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctca |
563 |
Q |
| |
|
||||||||||||||| |||| |||| | |||||||||| ||||| ||||| |||||||||| |||||||| | || || |||||| ||| ||||||| |
|
|
| T |
17508767 |
aaaacatctctaatatgaaggatgtcag-tagcataagtatgcaacgtatgatcacgaccatcaataatcaagtcaactgcttccaaacaagcactctca |
17508669 |
T |
|
| Q |
564 |
caaataatgt |
573 |
Q |
| |
|
|||||||||| |
|
|
| T |
17508668 |
caaataatgt |
17508659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 600 - 719
Target Start/End: Complemental strand, 43445387 - 43445268
Alignment:
| Q |
600 |
aaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggtt |
699 |
Q |
| |
|
|||||||||||| || | ||||| | | ||||||| |||||||||||||| | |||||||||||||| ||||| ||| |||||||| | |||||||||| |
|
|
| T |
43445387 |
aaaaatcaagacatatatggatagtacgtaactcagataataacgcatcacctccaacttcatagtgataaaaaacagatatccaatttccatcgtggtt |
43445288 |
T |
|
| Q |
700 |
gcgaacaacaccaccaacac |
719 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
43445287 |
gcgaactacaccaccaacac |
43445268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 629 - 715
Target Start/End: Original strand, 53590285 - 53590371
Alignment:
| Q |
629 |
aactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccacca |
715 |
Q |
| |
|
||||||||| ||||| |||||| | |||||| ||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
53590285 |
aactcagctgataacacatcacctccaactttatagtgagaaaaaccagctatcaaatctccatcgtggttgcgaacaacaccacca |
53590371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 575
Target Start/End: Complemental strand, 50426137 - 50425914
Alignment:
| Q |
351 |
ggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgtt |
450 |
Q |
| |
|
||||||| || |||||| ||||||||||| ||||| | ||||| | |||||||||||| ||||||||| ||| ||| || ||||| ||| | || || |
|
|
| T |
50426137 |
ggcagttccagtgagcaaagcacattgcatgtgatccttccttggccataaaatatgcatacatattttgttccttaaaaatatgcacaaatgttgtatt |
50426038 |
T |
|
| Q |
451 |
gtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaa |
550 |
Q |
| |
|
|||| |||||||||| |||||||| || |||| ||| | || ||||||||| ||| ||||| |||||| || ||||||||| | || || |||||| |
|
|
| T |
50426037 |
ttcatttccgtgtaaatcatctctagtatgaaggatg-tcagtgacataagtgtacaaggtatgatcacgatcagcaataatcaggtcaactgcttccaa |
50425939 |
T |
|
| Q |
551 |
gcaattactctcacaaataatgttg |
575 |
Q |
| |
|
|||| ||||| |||||||| |||| |
|
|
| T |
50425938 |
acaatcactcttacaaataacgttg |
50425914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 493 - 579
Target Start/End: Complemental strand, 43445491 - 43445405
Alignment:
| Q |
493 |
tagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcat |
579 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||| || | || || |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
43445491 |
tagcataagtgtgcaaggtatgatcacgaccgacaataataaggtcaactgcttccaaacaattactctcacaaataatgttgacat |
43445405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 597 - 716
Target Start/End: Original strand, 25828598 - 25828717
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||||||||||| || | ||||||| | || ||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||| |||| || |
|
|
| T |
25828598 |
tacaaaaatcaagacctatatggatagcacgtaattcagctaataacgcatcacttccaacttcatagcgagaaaaaccagttatccaatctccatcatg |
25828697 |
T |
|
| Q |
697 |
gttgcgaacaacaccaccaa |
716 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25828698 |
gttgcgaacaacaccaccaa |
25828717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 597 - 719
Target Start/End: Original strand, 5464761 - 5464883
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||||||||| | |||| ||||| | | ||||||||||||||| |||||| | ||||||||||||||| |||| | | |||||||||| ||||||| |
|
|
| T |
5464761 |
tacaaaaatcaagaactatctggatagtacgtaactcagctaataacacatcacctccaacttcatagtgagcaaaacctgctatccaatctccatcgtg |
5464860 |
T |
|
| Q |
697 |
gttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5464861 |
gttgcgaacaacaccaccaacac |
5464883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 362 - 575
Target Start/End: Original strand, 10328940 - 10329156
Alignment:
| Q |
362 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
461 |
Q |
| |
|
|||||| ||||| ||||| ||||| | ||||| |||||||||| ||||| ||||||||| ||| |||||||||||| |||| | ||||| ||| ||| | |
|
|
| T |
10328940 |
tgagcagagcactttgcatgtgatccttccttcactataaaatttgcacacatattttgttccctaagaacatgcaccaatgttgtgttcccatttccat |
10329039 |
T |
|
| Q |
462 |
gtaaaacatctctaatacgaagaatgtttggtagc----ataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaatta |
557 |
Q |
| |
|
||||| |||||||||| ||| |||| | |||| |||||||||||| ||||| |||||||||| ||||||||| | || | |||| | |||| | |
|
|
| T |
10329040 |
gtaaagcatctctaatgtgaaaaatg-tcaatagcatatataagtgtgcaaggtatgatcacgaccatcaataatcaggtcaactccttcctaacaatca |
10329138 |
T |
|
| Q |
558 |
ctctcacaaataatgttg |
575 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
10329139 |
ctctcacaaaaaatgttg |
10329156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 353 - 571
Target Start/End: Original strand, 27046116 - 27046332
Alignment:
| Q |
353 |
cagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgt |
452 |
Q |
| |
|
||||| || |||||| ||||| ||||| ||||| | |||||| | ||||| ||| | | ||||||| |||||||||||||||| |||| | || || | |
|
|
| T |
27046116 |
cagttccagtgagcagagcaccttgcatgtgatccttccttagtcacaaaatttgcccacgtattttgttccataagaacatgcaccaatgttgtatttt |
27046215 |
T |
|
| Q |
453 |
catctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagc |
552 |
Q |
| |
|
||| ||| |||||||||||||||||| |||| ||| ||||||||||||||| || ||||| ||||| ||| |||||||| | || || |||||| | |
|
|
| T |
27046216 |
catttccatgtaaaacatctctaatatgaaggatg-acggtagcataagtgtgtaaggtatgatcacg-ccaacaataatcaagtcaactgcttccaatc |
27046313 |
T |
|
| Q |
553 |
aattactctcacaaataat |
571 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
27046314 |
gatcactctcacaaataat |
27046332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 575
Target Start/End: Original strand, 5464520 - 5464744
Alignment:
| Q |
350 |
gggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgt |
449 |
Q |
| |
|
||||||||||| ||| || ||||| ||||| ||||| | |||||| | ||||||| ||||| ||||||| ||| ||||| ||||| |||| | | | |
|
|
| T |
5464520 |
gggcagtttcagtgaccaaagcaccttgcatgtgatccttccttagccataaaatctgcacatgtattttgttccccaagaatatgcaccaatgttctat |
5464619 |
T |
|
| Q |
450 |
tgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattcca |
549 |
Q |
| |
|
| ||| ||| |||||||||||||||||| |||| ||| | ||||||||||||||||| ||||| ||| | || |||||| || | || || ||||| |
|
|
| T |
5464620 |
ttccatttccatgtaaaacatctctaatatgaaggatg-ctagtagcataagtgtgcaaggtatgatcaaaatcaacaataataaggtcaactgcttcca |
5464718 |
T |
|
| Q |
550 |
agcaattactctcacaaataatgttg |
575 |
Q |
| |
|
| ||| ||||| ||||||||||||| |
|
|
| T |
5464719 |
aacaaccactctaacaaataatgttg |
5464744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 389 - 579
Target Start/End: Original strand, 12291789 - 12291978
Alignment:
| Q |
389 |
tccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgt |
488 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| || ||||||||| || |||| ||| ||| ||| | | |||||||||||||||||| |||| || | |
|
|
| T |
12291789 |
tccttaactataaaacctgcacacatattttgttctctaagaacatacaccaatgtagcattgccattttcatgtaaaacatctctaatatgaaggatct |
12291888 |
T |
|
| Q |
489 |
ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcat |
579 |
Q |
| |
|
| |||||||||||||||||| ||| ||||| ||| |||||||||| || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12291889 |
c-gctagcataagtgtgcaatgcatgatcacggccaacgataatcagctcaactgcttccaagcaatcactctcacaaataatgttgtcat |
12291978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 493 - 714
Target Start/End: Original strand, 12292041 - 12292257
Alignment:
| Q |
493 |
tagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnn |
592 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||| ||||||||||| || || ||||||||||| |||||||||||||||||| |||| ||| |
|
|
| T |
12292041 |
tagcataagtgtgcaatgcatgatcacggccaacaataatcagctcaactgcttccaagcaatcactctcacaaataatgttatcatagcctttttttga |
12292140 |
T |
|
| Q |
593 |
natttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcat |
692 |
Q |
| |
|
|||||||||||| || |||| ||||| | ||||||||| ||||||| |||||| | ||| ||||| ||||||||||||| |||| ||||| ||| |
|
|
| T |
12292141 |
a----acaaaaatcaagccctatctggatagtacgcaactcagttaataacacatcacctccaaattcatggtgagaaaaatcaaatatctaatctccat |
12292236 |
T |
|
| Q |
693 |
cgtggttgcgaacaacaccacc |
714 |
Q |
| |
|
| | ||||| ||||||| |||| |
|
|
| T |
12292237 |
c-ttgttgcaaacaacatcacc |
12292257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 596 - 718
Target Start/End: Complemental strand, 29047175 - 29047053
Alignment:
| Q |
596 |
ttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgt |
695 |
Q |
| |
|
||||||||||||||||| ||| | ||||| | |||||||||||||||||||||| | || |||||||||||||||| || ||| |||||| |||||| |
|
|
| T |
29047175 |
ttacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagattcatagtgagaaaaactagctattcaatctccatcgt |
29047076 |
T |
|
| Q |
696 |
ggttgcgaacaacaccaccaaca |
718 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
29047075 |
ggttgcaaacaacaccaccaaca |
29047053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 362 - 574
Target Start/End: Complemental strand, 2443471 - 2443255
Alignment:
| Q |
362 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
461 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | ||||||||| || ||||||||| ||| || |||||||||| ||| | || || ||| | | | |
|
|
| T |
2443471 |
tgagcagagcacattgcacgtgatccttccttagccataaaatatacatacatattttgttccctatgaacatgcattaatgttgtattaccattttcat |
2443372 |
T |
|
| Q |
462 |
gtaaaacatctctaatacgaagaatgt----ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaatta |
557 |
Q |
| |
|
||||||||||||||||| |||| |||| | |||||||| |||||||| ||||| |||||||||| |||||||| | || || |||||| |||| | |
|
|
| T |
2443371 |
gtaaaacatctctaatatgaaggatgtcatgtcagtagcatatgtgtgcaaggtatgatcacgaccatcaataatcaagtcaactgcttccaaacaatca |
2443272 |
T |
|
| Q |
558 |
ctctcacaaataatgtt |
574 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2443271 |
ttctcacaaataatgtt |
2443255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 597 - 719
Target Start/End: Complemental strand, 2442384 - 2442262
Alignment:
| Q |
597 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
696 |
Q |
| |
|
|||||||||||| ||| || | |||| || | |||||||||||||||||||||| | |||||||||||||||||||| || |||||| ||| ||| ||| |
|
|
| T |
2442384 |
tacaaaaatcaacacctatttggataacacgtaactcagctaataacgcatcacctccaacttcatagtgagaaaaactagctatccagtctccattgtg |
2442285 |
T |
|
| Q |
697 |
gttgcgaacaacaccaccaacac |
719 |
Q |
| |
|
|||| | |||||||||||||||| |
|
|
| T |
2442284 |
gttgtggacaacaccaccaacac |
2442262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 571
Target Start/End: Original strand, 10992968 - 10993047
Alignment:
| Q |
492 |
gtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataat |
571 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| || |||||||| | || || || ||| |||| ||||||||||||||| |
|
|
| T |
10992968 |
gtagcataagtgtgcaaggtatgatcacgactatccataatcaggtcaactgctttcaaacaatcactctcacaaataat |
10993047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University