View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_10 (Length: 538)
Name: NF9913A_low_10
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 538
Target Start/End: Original strand, 12832523 - 12833052
Alignment:
| Q |
13 |
tggacatcacggggtttgaaaagattggtgatgtagaaagctctaaggaagcatgggaccatcaatgc--accatcatatcacaatttgaaaccattaaa |
110 |
Q |
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| T |
12832523 |
tggacaacaaggtgtttgaaaagattggtgatgtagaaagctctaaggaagcatgggaccatcaatgcgtaccaacaaatcacaatttgaaaccattaaa |
12832622 |
T |
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| Q |
111 |
ttatgcttgctagcaattgagtagaacacatgaatggtcacaatatgagcatctccaaataataataaaaca-caacattgatggattgaactatgaaat |
209 |
Q |
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| T |
12832623 |
ttatgcttactagcaattgagtagaacacatgaatggtcacaatatgagcatctccaaataataataaaaaaacaacattgatggattgaactatgaaat |
12832722 |
T |
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| Q |
210 |
cacatcttcaaactaaactacatttttctctataaaagaatgatcctaaatagcttatggctaaaaaagaattctaatcacgatggaaagtaaa-ccaat |
308 |
Q |
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| T |
12832723 |
cacatcttcaaactaaactacatttttctctataaaagaatgatcctaaatagctcatggctaaaattttcttctaatcactatggaaagtaaaaccaat |
12832822 |
T |
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| Q |
309 |
ccaggtaaatgttgcctctgaaacactttgttttatttccaatcttctgatcctatggaatgtattattttatttccaatctagaacatgttgaataaaa |
408 |
Q |
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| T |
12832823 |
ccaggtaaatgttgcctctgaaacactttgttttatttccaatcttctgatcctatggaatgtattattttatttccaatctagaacatgttgaataaaa |
12832922 |
T |
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| Q |
409 |
atttgttccgaaatacttctgtgcaaacccgacaacttcaatagaaaccgcaatccaagagcagaaataaaggtaatccttcatcttcacagtaatagta |
508 |
Q |
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| T |
12832923 |
atttgttccgaaatacttctgtgcaaacccgacaacttcaatagaaaccgcaatccaagagcagaaataaaggtaatccttcatcttcacagtaatagta |
12833022 |
T |
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| Q |
509 |
tttctcataaacatccatcatttatcatga |
538 |
Q |
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| T |
12833023 |
tttctcataaacatccatcatttatcatga |
12833052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 473
Target Start/End: Original strand, 8244390 - 8244453
Alignment:
| Q |
410 |
tttgttccgaaatacttctgtgcaaacccgacaacttcaatagaaaccgcaatccaagagcaga |
473 |
Q |
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| T |
8244390 |
tttgttccaaaatacttctgcgcaaacccatcaagttcaatacaaaccgcaacccaagtgcaga |
8244453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 505
Target Start/End: Original strand, 8244521 - 8244549
Alignment:
| Q |
477 |
aaaggtaatccttcatcttcacagtaata |
505 |
Q |
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| T |
8244521 |
aaaggtaatccttcatcttcacagtaata |
8244549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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