View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_106 (Length: 329)
Name: NF9913A_low_106
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_106 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 43612100 - 43611772
Alignment:
| Q |
1 |
tcactttcgccttctcacctcgtaagtactatcaatttcctatattcatttcaaacaaccaacactttgttcaacattagtactgatatgttcagtatgg |
100 |
Q |
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| T |
43612100 |
tcactttcgccttctcacctcgtaagtactatcaatttcctatattcatttcaaacaaccaacactttattcaacattagtactgatatgttcagtatgg |
43612001 |
T |
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| Q |
101 |
ctcataagcatataatagggcaaggggcaggggagctgagtgagtgagacggtgcggttcaggggtattgttgtaatctggactgtagtcttatatatat |
200 |
Q |
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| T |
43612000 |
ctcataagcatataatagggcaaggggcaggggagctgagtgagtgagacggtgcgattcaggggtattgttgtaatctggaccgtagtcttatatatat |
43611901 |
T |
|
| Q |
201 |
tgtttgtaattgtaacactgtaataatacaggactacagctgctctatagtcgcagatgtaggcacactggaccaaattgcataaacaaatgattgtgtt |
300 |
Q |
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| T |
43611900 |
ggtttgtaattgtaacactgcaataatacaggactacagctgctctatagtcgcagatgtaggcacactggaccaaattgcataaacaaatgattgtgtt |
43611801 |
T |
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| Q |
301 |
cattgtcattgttatttatcgcttctttg |
329 |
Q |
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| T |
43611800 |
cattgtcattgttatttatcgcttctttg |
43611772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 34940182 - 34940234
Alignment:
| Q |
157 |
gttcaggggtattgttgtaatctggactgtagtcttatatatattgtttgtaa |
209 |
Q |
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| T |
34940182 |
gttcaggggtattgttctaatctggaccgtagtactatatatatggcttgtaa |
34940234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 27407329 - 27407245
Alignment:
| Q |
220 |
gtaataatacaggactacagctgctctatagtcgcagatgtaggcacactggaccaaattgcataaacaaatgattgtgttcattgtc |
307 |
Q |
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| T |
27407329 |
gtaataatacaggactatagcttctctacagtcgcagatgta---acacttggccaaattgtgtaatcaaataattgtgtttattgtc |
27407245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 32349776 - 32349735
Alignment:
| Q |
159 |
tcaggggtattgttgtaatctggactgtagtcttatatatat |
200 |
Q |
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| T |
32349776 |
tcaggggcattgttgtaatctggaccgtagtattatatatat |
32349735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 24459 - 24491
Alignment:
| Q |
233 |
actacagctgctctatagtcgcagatgtaggca |
265 |
Q |
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| T |
24459 |
actacagctgctctatagtcgcagaggtaggca |
24491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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