View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_109 (Length: 323)
Name: NF9913A_low_109
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_109 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 308
Target Start/End: Complemental strand, 1580936 - 1580634
Alignment:
| Q |
6 |
tttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaatagg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
1580936 |
tttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaatagg |
1580837 |
T |
|
| Q |
106 |
caatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagcc |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580836 |
caatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagcc |
1580737 |
T |
|
| Q |
206 |
atgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgtgctttgtggaatattaagaggcaattttgtttcttggc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580736 |
atgctaccttcatcacttgagcgacaccttttcttcttattcactgcttctcctttcattgtgctttgtggaatattaagaggcaattttgtttcttggc |
1580637 |
T |
|
| Q |
306 |
gaa |
308 |
Q |
| |
|
||| |
|
|
| T |
1580636 |
gaa |
1580634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 1603879 - 1604181
Alignment:
| Q |
6 |
tttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaatagg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
1603879 |
tttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaatagg |
1603978 |
T |
|
| Q |
106 |
caatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagcc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603979 |
caatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagcc |
1604078 |
T |
|
| Q |
206 |
atgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgtgctttgtggaatattaagaggcaattttgtttcttggc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1604079 |
atgctaccttcatcacttgagcgacaccttttcttcttattcactgcttctcctttcattgtgctttgtggaatattaagaggcaattttgtttcttggc |
1604178 |
T |
|
| Q |
306 |
gaa |
308 |
Q |
| |
|
||| |
|
|
| T |
1604179 |
gaa |
1604181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 1587425 - 1587191
Alignment:
| Q |
17 |
ctgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcg |
116 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||| |||||||||| | ||||| ||||||||||||||| |||| || | ||||||||||||||| | |
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|
| T |
1587425 |
ctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtg |
1587326 |
T |
|
| Q |
117 |
gaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagcca---tgctacc |
213 |
Q |
| |
|
||||||||||||| ||||||||||| || ||| |||||||||||| |||||||||| |||||||||| || || || || ||||||| |
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|
| T |
1587325 |
gaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggtttaactcttcttt---ccacataagacatgctgctacc |
1587229 |
T |
|
| Q |
214 |
ttcatcacttgagcgacaccttttcttcttattcacta |
251 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1587228 |
ttcatcacttgagcgacaccttttctttttattcacta |
1587191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 267
Target Start/End: Original strand, 1590822 - 1591048
Alignment:
| Q |
41 |
ttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttat |
140 |
Q |
| |
|
||||||||||||| |||||||||| | ||||| ||||||||||||||| |||| || | ||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
1590822 |
ttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttat |
1590921 |
T |
|
| Q |
141 |
cttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcct-tatcagccatgctaccttcatcacttgagcgacaccttttct |
239 |
Q |
| |
|
| || ||| |||||||||||| |||||||||| || ||||||| ||| | | || | ||||||||||||||||||||||||||||||||| |
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| T |
1590922 |
catgtttttttggtttgatcttcttcgtggtctttggtttaacacttctttccgcataaaacatgc-tgctaccttcatcacttgagcgacaccttttct |
1591020 |
T |
|
| Q |
240 |
tcttattcactacttctcctttcattgt |
267 |
Q |
| |
|
| |||||||| || ||||||| |||||| |
|
|
| T |
1591021 |
ttttattcacgacatctccttccattgt |
1591048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 1586815 - 1586786
Alignment:
| Q |
294 |
ttgtttcttggcgaacatgatctccttcca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
1586815 |
ttgtttcttggcgaacatgatctccttcca |
1586786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 1586845 - 1586817
Alignment:
| Q |
294 |
ttgtttcttggcgaacatgatctccttcc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1586845 |
ttgtttcttggcgaacatgatctccttcc |
1586817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 1586959 - 1586931
Alignment:
| Q |
294 |
ttgtttcttggcgaacatgatctccttcc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1586959 |
ttgtttcttggcgaacatgatctccttcc |
1586931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 19270394 - 19270616
Alignment:
| Q |
30 |
caaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaa |
129 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||| | ||||||||||||||||||||| |||| | | ||||||||||||||| ||||| |||||||| |
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|
| T |
19270394 |
caaacaattttttacccatgatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaa |
19270493 |
T |
|
| Q |
130 |
tttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatg---ctaccttcatcacttgag |
226 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || | || |||| |||||||||||||||||| |
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|
| T |
19270494 |
attttccttatcttgtttttttggtttcatcttcttcgtgctctttggtttcactcttctttctgc---gtgagacatgcttctaccttcatcacttgag |
19270590 |
T |
|
| Q |
227 |
cgacaccttttcttcttattcactac |
252 |
Q |
| |
|
| |||||||||||| ||||||||||| |
|
|
| T |
19270591 |
caacaccttttctttttattcactac |
19270616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 39616064 - 39616178
Alignment:
| Q |
30 |
caaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaa |
129 |
Q |
| |
|
||||||||| ||| ||||||||| | |||||||| | ||||||||||| ||||||||| ||| ||||| |||||| ||||||||||||||| | | ||| |
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|
| T |
39616064 |
caaacaatttctttgacatgatatatctgatatcagtgccattcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaa |
39616163 |
T |
|
| Q |
130 |
tttttccttatcttg |
144 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
39616164 |
atttttcttatcttg |
39616178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 39616233 - 39616349
Alignment:
| Q |
160 |
cttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcct |
259 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| || || ||||||| ||||||||| || ||||||||||||||| ||||| ||||||||||| |
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|
| T |
39616233 |
cttcttcgtggtctttggtttcgttcttctttccgc---ataagacatgctaacttcatcacatgggcgacaccttttcttggtattcgctacttctcct |
39616329 |
T |
|
| Q |
260 |
ttcattgtgctttgtggaat |
279 |
Q |
| |
|
| || |||| |||||||||| |
|
|
| T |
39616330 |
tccactgtgttttgtggaat |
39616349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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