View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_112 (Length: 322)

Name: NF9913A_low_112
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_112
NF9913A_low_112
[»] chr3 (11 HSPs)
chr3 (9-322)||(30166942-30167255)
chr3 (38-322)||(49731559-49731843)
chr3 (200-322)||(9379326-9379448)
chr3 (174-322)||(2813263-2813411)
chr3 (174-322)||(29309637-29309785)
chr3 (174-322)||(6176241-6176389)
chr3 (253-322)||(23602002-23602071)
chr3 (253-322)||(54439955-54440024)
chr3 (279-317)||(14307442-14307480)
chr3 (117-154)||(19875640-19875677)
chr3 (258-322)||(25872955-25873019)
[»] chr2 (8 HSPs)
chr2 (9-322)||(45421748-45422062)
chr2 (174-321)||(26894375-26894522)
chr2 (174-321)||(26899814-26899961)
chr2 (253-322)||(31085479-31085548)
chr2 (253-322)||(33548101-33548170)
chr2 (253-322)||(43627728-43627797)
chr2 (257-311)||(15017916-15017970)
chr2 (273-322)||(22052856-22052905)
[»] chr7 (11 HSPs)
chr7 (9-322)||(15653303-15653616)
chr7 (9-278)||(46623966-46624235)
chr7 (12-310)||(12378329-12378627)
chr7 (253-322)||(45943080-45943149)
chr7 (253-316)||(43105546-43105609)
chr7 (257-322)||(45992805-45992870)
chr7 (174-322)||(13440282-13440430)
chr7 (253-308)||(23887327-23887382)
chr7 (253-308)||(23898503-23898558)
chr7 (257-316)||(33796213-33796272)
chr7 (253-308)||(33821361-33821416)
[»] chr8 (4 HSPs)
chr8 (6-322)||(7452581-7452897)
chr8 (174-319)||(16420773-16420918)
chr8 (273-322)||(19384572-19384621)
chr8 (257-322)||(4987911-4987976)
[»] chr1 (8 HSPs)
chr1 (14-322)||(36306013-36306321)
chr1 (31-322)||(21528390-21528685)
chr1 (109-322)||(37530795-37531008)
chr1 (253-322)||(48265560-48265629)
chr1 (253-322)||(30970450-30970519)
chr1 (174-322)||(32353060-32353208)
chr1 (257-322)||(25504839-25504904)
chr1 (174-322)||(48073194-48073342)
[»] chr5 (5 HSPs)
chr5 (6-322)||(10486515-10486831)
chr5 (90-322)||(34481176-34481408)
chr5 (253-322)||(587745-587814)
chr5 (257-311)||(11574540-11574594)
chr5 (257-322)||(3727245-3727310)
[»] chr4 (14 HSPs)
chr4 (6-322)||(3129577-3129890)
chr4 (138-322)||(7662966-7663150)
chr4 (64-322)||(8654726-8654984)
chr4 (110-322)||(47541154-47541366)
chr4 (174-322)||(2631627-2631775)
chr4 (6-61)||(7662904-7662959)
chr4 (174-322)||(55298849-55298997)
chr4 (174-322)||(23873239-23873387)
chr4 (257-322)||(19647938-19648003)
chr4 (119-322)||(20675251-20675454)
chr4 (253-322)||(13158615-13158684)
chr4 (257-322)||(49926112-49926177)
chr4 (257-311)||(19114676-19114730)
chr4 (253-322)||(8486823-8486892)
[»] scaffold0029 (1 HSPs)
scaffold0029 (6-322)||(134449-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (6-322)||(312276-312592)
scaffold0002 (6-322)||(327730-328046)
[»] scaffold0418 (2 HSPs)
scaffold0418 (138-322)||(7904-8088)
scaffold0418 (6-61)||(8095-8149)
[»] scaffold0131 (1 HSPs)
scaffold0131 (6-197)||(4144-4335)
[»] chr6 (10 HSPs)
chr6 (174-322)||(23347230-23347378)
chr6 (270-314)||(33630334-33630378)
chr6 (90-322)||(25318083-25318315)
chr6 (90-322)||(26205577-26205809)
chr6 (253-322)||(15674054-15674123)
chr6 (257-322)||(19255869-19255934)
chr6 (257-322)||(33640147-33640212)
chr6 (288-322)||(1683269-1683303)
chr6 (257-322)||(503378-503443)
chr6 (258-311)||(5085873-5085926)
[»] scaffold0112 (1 HSPs)
scaffold0112 (253-316)||(15492-15555)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 30166942 - 30167255
Alignment:
Q  9 tcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgatt 108  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30166942 tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt 30167041  T
Q  109 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30167042 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgt 30167141  T
Q  209 ggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagg 308  Q
    |||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30167142 ggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg 30167241  T
Q  309 gctttacttcttga 322  Q
     |||||||||||||    
T  30167242 actttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 38 - 322
Target Start/End: Original strand, 49731559 - 49731843
Alignment:
Q  38 tagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgattctgatacgttgttttggttggataggtgg 137  Q
    ||||| |||||||||||| || || || || ||||||| || ||| ||||||||||||||||| ||||   |||| || ||||||||||| |||||||||    
T  49731559 taggggtagtgatggtgatggagagtgcggctggtttgttgatcatgtggctaggagggttggagatggagctgacacattgttttggtttgataggtgg 49731658  T
Q  138 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagc 237  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |||||    
T  49731659 ttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagc 49731758  T
Q  238 agcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||| ||||       |||||||||| ||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  49731759 agcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 322
Target Start/End: Complemental strand, 9379448 - 9379326
Alignment:
Q  200 catgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcg 299  Q
    ||||| ||||||||||||||||| |||||||   ||||||  ||||       ||||||||||||| || || |||||||||||||| | ||||||||||    
T  9379448 catgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcg 9379349  T
Q  300 gagtgtagggctttacttcttga 322  Q
    ||||||||||| ||||| |||||    
T  9379348 gagtgtagggcattactacttga 9379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 2813263 - 2813411
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||| || ||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  2813263 ttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 2813362  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||| ||| || |||  |||||||||||||||||||||||    
T  2813363 ggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 29309785 - 29309637
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||| |||||  ||||| ||||||| |||  ||||| |  ||||       |||||||||| ||||| || |    
T  29309785 ttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 29309686  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||| ||| || |||  ||||||||||| |||||||||||    
T  29309685 ggcagtgggaggaggagttgctagatgagtgtagggcgttacttcttga 29309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 6176241 - 6176389
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||| ||||||||||   ||||| || ||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  6176241 ttgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 6176340  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
     |||||||||||| ||| || |||  |||||||||||||||||||||||    
T  6176341 agcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 23602071 - 23602002
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||| | ||| || |||||||||||||| ||| || |||  |||||||||||||||||||||||    
T  23602071 ggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 54439955 - 54440024
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||| |||||||||||| |||||  |||||| |||||| | |||| |||||||||||||||||| |||||    
T  54439955 ggagttggaggcgtagactgtgggcgtgggaagaagagttattagaggagtgtagggctttactgcttga 54440024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 14307480 - 14307442
Alignment:
Q  279 tgggaggaagagatgttagcggagtgtagggctttactt 317  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  14307480 tgggaggaagacatgttaggggagtgtagggctttactt 14307442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 19875677 - 19875640
Alignment:
Q  117 ttgttttggttggataggtggttaggggatgttccgtt 154  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  19875677 ttgttttggtttgataggtggttaggagatgttccgtt 19875640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
Q  258 tggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||| ||||| || |||||||||||||| | | || ||| ||||||||||||||||||| ||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga 25873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 45422062 - 45421748
Alignment:
Q  9 tcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgatt 108  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45422062 tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt 45421963  T
Q  109 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45421962 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgt 45421863  T
Q  209 ggcaaacttgttctctgttgatctggagcagcagggg-nnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtag 307  Q
    |||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  45421862 ggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtag 45421763  T
Q  308 ggctttacttcttga 322  Q
    |||||| ||||||||    
T  45421762 ggcttttcttcttga 45421748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 26894375 - 26894522
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||||||  |  ||||| ||||||||| |  ||||| |  ||||       |||||||||| ||||| || |    
T  26894375 ttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttat 26894474  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttg 321  Q
    ||||||||||||| ||| || |||  ||||||||||||||||||||||    
T  26894475 ggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 26899814 - 26899961
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||||||  |  ||||| ||||||||| |  ||||| |  ||||       |||||||||| ||||| || |    
T  26899814 ttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttat 26899913  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttg 321  Q
    ||||||||||||| ||| || |||  ||||||||||||||||||||||    
T  26899914 ggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 31085479 - 31085548
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||  | || ||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  31085479 ggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 33548170 - 33548101
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||| ||||| || |||||||||||||| ||| || |||  |||||||||||||||||||||||    
T  33548170 ggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 43627797 - 43627728
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||| ||||| || |||||||||||||| ||| || |||  |||||||||||||||||||||||    
T  43627797 ggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 15017970 - 15017916
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggct 311  Q
    ||||||||| |||||||||  ||||||||| |||||||||| |||||||||||||    
T  15017970 gtggaggcggagattgtgggtgtgggaggaggagatgttagaggagtgtagggct 15017916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 22052905 - 22052856
Alignment:
Q  273 tggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||||| ||| || ||| ||||||||||||||||||||||||    
T  22052905 tggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 15653303 - 15653616
Alignment:
Q  9 tcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgatt 108  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||  |    
T  15653303 tcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggat 15653402  T
Q  109 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgt 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||| ||||||||||||| |||||||||||||||||| |    
T  15653403 ctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctat 15653502  T
Q  209 ggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagg 308  Q
    |||| ||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15653503 ggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg 15653602  T
Q  309 gctttacttcttga 322  Q
    ||||||||||||||    
T  15653603 gctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 46624235 - 46623966
Alignment:
Q  9 tcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgatt 108  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| | |||| ||    
T  46624235 tcgtgttggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggtt 46624136  T
Q  109 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgt 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  46624135 ctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgt 46624036  T
Q  209 ggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcag 278  Q
    |||| ||||||||||||||||| |||||||||||||        |||||||||||||||| |||||||||    
T  46624035 ggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag 46623966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 12378329 - 12378627
Alignment:
Q  12 tgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgattctg 111  Q
    ||||||||| ||||||||||| |||||||||| || |  ||||| ||||   |||| ||||||| | | || |||    ||||||||||||||||  |||    
T  12378329 tgttggtggagggaggtgagttgtattagggaaaggggaggtgatggtggtagtggatggtttgatagccatgtgttgcggagggttggtgatgaggctg 12378428  T
Q  112 atacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgtggc 211  Q
    ||||   ||||||||  ||||||||| |||||||||||||  ||||||  || | || |||| ||||||||||||  ||||||||| |||||||||||||    
T  12378429 atacaacgttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggc 12378528  T
Q  212 aaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggc 310  Q
    ||| ||||||| |||| |   | ||| |  ||||        |||| ||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  12378529 aaatttgttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc 12378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 45943149 - 45943080
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||  ||||||| |||||||||||||| ||| || ||| ||||||||||||||||||||||||    
T  45943149 ggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 43105609 - 43105546
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttact 316  Q
    ||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||| |||||    
T  43105609 ggaggtggaggcgcaggttgtggcaatgggaggaggagatgttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 45992870 - 45992805
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||||||  ||||||||| |||||||||| ||||||||||||||| || |||||    
T  45992870 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttga 45992805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 13440430 - 13440282
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||| || ||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  13440430 ttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttat 13440331  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    || |||||||||| ||| || |||  |||||| ||||||||||||||||    
T  13440330 ggtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 23887382 - 23887327
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagg 308  Q
    ||||||||||| | ||| |||||  |||||||||||||||||||||||||||||||    
T  23887382 ggaggtggaggagaagactgtgggtgtgggaggaagagatgttagcggagtgtagg 23887327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 23898558 - 23898503
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagg 308  Q
    ||||||||||| | ||| |||||  |||||||||||||||||||||||||||||||    
T  23898558 ggaggtggaggagaagactgtgggtgtgggaggaagagatgttagcggagtgtagg 23898503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 33796213 - 33796272
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttact 316  Q
    ||||||||| ||| |||||  |||||||||||||||||||| |||||||||| |||||||    
T  33796213 gtggaggcggagactgtgggcgtgggaggaagagatgttagaggagtgtaggactttact 33796272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 33821361 - 33821416
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagg 308  Q
    ||||||||||| | |||||||||  |||||||||||||||| ||||||||||||||    
T  33821361 ggaggtggaggagaagattgtgggtgtgggaggaagagatgctagcggagtgtagg 33821416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 7452897 - 7452581
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg 105  Q
    ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||   |  |||||||||||||||||||| ||||    
T  7452897 gtttcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatg 7452798  T
Q  106 attctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtc 205  Q
     ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||    
T  7452797 gttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtc 7452698  T
Q  206 tgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgt 305  Q
    ||||||| ||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||| | | | |||| |||||||    
T  7452697 tgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgt 7452598  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  7452597 agggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 16420773 - 16420918
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   |||||||||||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  16420773 ttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 16420872  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttct 319  Q
    ||||||||||||| ||| || |||  ||| ||||||||||||||||    
T  16420873 ggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  273 tggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 4987911 - 4987976
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||  |||||||||  ||||||||| |||||||||| ||||||||||||||| || |||||    
T  4987911 gtggaggcagagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttga 4987976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 36306321 - 36306013
Alignment:
Q  14 ttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgattctgat 113  Q
    ||||||| |||||||||||||| |||| ||||||| | |||||||||| |||||||||||||  || |||||||||||||||||||| |||| |||||||    
T  36306321 ttggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgat 36306222  T
Q  114 acgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgtggcaa 213  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||     
T  36306221 acgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcag 36306122  T
Q  214 acttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggcttt 313  Q
    ||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  36306121 acttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggcttt 36306022  T
Q  314 acttcttga 322  Q
    |||||||||    
T  36306021 acttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 21528685 - 21528390
Alignment:
Q  31 gtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgattctgatacgttgttttggttgga 130  Q
    ||||| |||||| |||||||||||| || ||  | || ||||||| || ||| ||||||||||||||||| |||||  ||||||||||||||||||||||    
T  21528685 gtcgtcttaggggtagtgatggtgatggagagagcggatggtttgttgatcatgtggctaggagggttggagatgaagctgatacgttgttttggttgga 21528586  T
Q  131 taggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgat 230  Q
    ||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||||||||| |||||||||| | | |||||||||||||||||    
T  21528585 taggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttgat 21528486  T
Q  231 ctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggag----tgtagggctttacttcttga 322  Q
      ||||||   ||||       |||||||||| ||||| || ||| |||||||||| || |||||||||| |     |||||||||||||||||||    
T  21528485 tcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttga 21528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 37531008 - 37530795
Alignment:
Q  109 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgt 208  Q
    ||||||| | ||||||||  ||||||||||||||||| |||||  | |||||  |  || || | ||||||||||||||||||||||||   |||| |||    
T  37531008 ctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgt 37530909  T
Q  209 ggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagg 308  Q
    |||| ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |||||||||||||| | | || ||| ||||||||||    
T  37530908 ggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagg 37530809  T
Q  309 gctttacttcttga 322  Q
    ||||||||||||||    
T  37530808 gctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 48265560 - 48265629
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  48265560 ggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 30970450 - 30970519
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||||||||||||||  ||||||||| |||||| | |||||||||||||| |||||||||||    
T  30970450 ggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga 30970519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 32353060 - 32353208
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||| |||||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  32353060 ttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 32353159  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||| |||| ||| || |||  |||||||||||||||||||||||    
T  32353160 ggcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 25504839 - 25504904
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||||||  ||||||||| |||||||||| ||||||||||||||| || |||||    
T  25504839 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttga 25504904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 48073194 - 48073342
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||| || ||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  48073194 ttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 48073293  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    || |||||||||| ||| || |||  |||||| ||||||||||||||||    
T  48073294 gggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 10486515 - 10486831
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg 105  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||||||| || || ||  | ||||||| || ||| ||||||||||||||||| ||||    
T  10486515 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatg 10486614  T
Q  106 attctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtc 205  Q
       |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||  |||||||||||||| |||||||| |||||||    
T  10486615 gagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtc 10486714  T
Q  206 tgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgt 305  Q
    ||||||| |||||||||||||||||  |||||||| ||||       |||||||||| ||||| ||||||||||||||||| || |||||||||||||||    
T  10486715 tgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgt 10486814  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  10486815 agggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 90 - 322
Target Start/End: Complemental strand, 34481408 - 34481176
Alignment:
Q  90 aggagggttggtgatgattctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacag 189  Q
    ||||| ||||||||||   ||||||| | ||||||||  ||||||||||||||||| |||||  | |||||  | ||| || | ||||||||||||||||    
T  34481408 aggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacag 34481309  T
Q  190 agaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaaga 289  Q
    ||||||||   |||||||||||| | ||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |||||||||||||| |     
T  34481308 agaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggg 34481209  T
Q  290 gatgttagcggagtgtagggctttacttcttga 322  Q
    | || ||| ||||||||||||||||||||||||    
T  34481208 gttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 587814 - 587745
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||||||  | |||  ||||||||| || ||||||| ||||||||||||||||||||||||    
T  587814 ggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtagggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 11574540 - 11574594
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggct 311  Q
    ||||||||| |||||||||  ||||||||| |||||||||| |||||||||||||    
T  11574540 gtggaggcggagattgtgggcgtgggaggaggagatgttagaggagtgtagggct 11574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 3727245 - 3727310
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| ||| ||||   |||||||||||||||||||| |||||||||| |||| || |||||    
T  3727245 gtggaggcggagactgtgagcgtgggaggaagagatgttagaggagtgtaggacttttctgcttga 3727310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 3129577 - 3129890
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg 105  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||||||| || ||  | || ||||||| || ||| ||||||||||||||||| ||||    
T  3129577 gtttcgtgttggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatg 3129676  T
Q  106 attctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtc 205  Q
       ||||||| ||||||||||| | ||||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||| |||||||    
T  3129677 gagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtc 3129776  T
Q  206 tgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgt 305  Q
    ||||||| ||||||||||| |||||  ||||||||  |||       |||||||||| ||| | |||||||||||||||   ||||||||||||||||||    
T  3129777 tgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggag---gagatgttagcggagtgt 3129873  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  3129874 agggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 138 - 322
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
Q  138 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  238 agcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||       |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7663150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 8654726 - 8654984
Alignment:
Q  64 gtgggtggtttggtggtcacgtggctaggagggttggtgatgattctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccg 163  Q
    |||| |||||||||| ||  ||||||||||||||||| ||||   || |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  8654726 gtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccg 8654825  T
Q  164 ttttcgtagattgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggagg 263  Q
    ||| |||||  ||||||||||||||||||||||| | |||||||||||| ||||||| |||||||||  |||||||  ||||       ||||||||||     
T  8654826 tttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggaga 8654925  T
Q  264 cgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  8654926 cgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 110 - 322
Target Start/End: Complemental strand, 47541366 - 47541154
Alignment:
Q  110 tgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgtg 209  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  47541366 tgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaataagttcatgtctgtg 47541267  T
Q  210 gcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtaggg 309  Q
    ||| ||||||| |||||||||  |||||||| |||        |||||||||| ||| | |||||||||||| |||| ||||||||||||||||||||||    
T  47541266 gcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgttagcggagtgtaggg 47541167  T
Q  310 ctttacttcttga 322  Q
    |||||||||||||    
T  47541166 ctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 2631775 - 2631627
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   |||||||||||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  2631775 ttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 2631676  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||| ||| || |||  |||||||||||||||||||||||    
T  2631675 ggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 7662904 - 7662959
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtga 61  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7662904 gtttcgtgttggtggggggaggtgagtcgtattagggatagtggtggtgagggtga 7662959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 55298997 - 55298849
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||| || ||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  55298997 ttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttat 55298898  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||| ||| || |||  |||||||||||||||||||||||    
T  55298897 ggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 23873239 - 23873387
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||| || ||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| |  |    
T  23873239 ttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaat 23873338  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||| ||| || |||  |||||||||||||||||||||||    
T  23873339 ggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 19648003 - 19647938
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||||||  ||||||||| |||||||||| ||||||||||||||| || |||||    
T  19648003 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttga 19647938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 20675454 - 20675251
Alignment:
Q  119 gttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgtggcaaacttg 218  Q
    ||||||||  ||||||||||||||||| | |||  | ||||| || ||| |  | ||||||||||||||||||||||||   || || |||||  |||||    
T  20675454 gttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttg 20675355  T
Q  219 ttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttc 318  Q
     ||| |||||||  ||||| |  ||||       |||||||||| ||||| || |||||||||||||| ||| || | |  ||||||||| |||||||||    
T  20675354 ctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttc 20675255  T
Q  319 ttga 322  Q
    ||||    
T  20675254 ttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 13158615 - 13158684
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||||||| ||||||  ||||||| |||||||||||| | |||| ||| |||| ||||||||    
T  13158615 ggaggtggaggcgtaggttgtgggcgtgggagtaagagatgttagagaagtggaggactttgcttcttga 13158684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||||||  ||||||||| ||| |||||| ||||||||||||||| || |||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga 49926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 19114730 - 19114676
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggct 311  Q
    ||||||||| |||||||||  ||||||||| ||||| |||| |||||||||||||    
T  19114730 gtggaggcggagattgtgggtgtgggaggaggagatattagaggagtgtagggct 19114676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 8486823 - 8486892
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||| ||||| || |||||||||||| | ||| || |||   ||||||||||||||||||||||    
T  8486823 ggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 134449 - 134765
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg 105  Q
    ||||| ||||||||| |||||||||||||| |||||| |||||||||||  || ||  | || |||||||||| ||  ||||||||||||||||| ||||    
T  134449 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 134548  T
Q  106 attctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtc 205  Q
       || |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||||| | |||||    
T  134549 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 134648  T
Q  206 tgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgt 305  Q
    ||||||| ||||||| ||| |||||  |||||||  ||||       |||||||||| ||||| ||||||||||||||||| ||  ||||||||||||||    
T  134649 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 134748  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  134749 agggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 312276 - 312592
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg 105  Q
    ||||| ||||||||| |||||||||||||| |||||| |||||||||||  || ||  | || |||||||||| ||  ||||||||||||||||| ||||    
T  312276 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 312375  T
Q  106 attctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtc 205  Q
       || |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||||| | |||||    
T  312376 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 312475  T
Q  206 tgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgt 305  Q
    ||||||| ||||||| ||| |||||  |||||||  ||||       |||||||||| ||||| ||||||||||||||||| ||  ||||||||||||||    
T  312476 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 312575  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  312576 agggctttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 327730 - 328046
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg 105  Q
    ||||| ||||||||| |||||||||||||| |||||| |||||||||||  || ||  | || |||||||||| ||  ||||||||||||||||| ||||    
T  327730 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 327829  T
Q  106 attctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtc 205  Q
       || |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||||| | |||||    
T  327830 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 327929  T
Q  206 tgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgt 305  Q
    ||||||| ||||||| ||| |||||  |||||||  ||||       |||||||||| ||||| ||||||||||||||||| ||  ||||||||||||||    
T  327930 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 328029  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  328030 agggctttacttcttga 328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 138 - 322
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
Q  138 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  238 agcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||       |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 8149 - 8095
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtga 61  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  8149 gtttcgtgttggtggggg-aggtgagtcgtattagggatagtggtggtgagggtga 8095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 4144 - 4335
Alignment:
Q  6 gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg 105  Q
    |||||||| |||||| ||||||||||||||||||||| |||||||||||| || ||  | || ||||||| || ||| |||||| |||||||||| ||||    
T  4144 gtttcgtggtggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatg 4243  T
Q  106 attctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataag 197  Q
       || |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||  |||||||||||| ||||||||||    
T  4244 gagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataag 4335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 23347230 - 23347378
Alignment:
Q  174 ttgtttgagttaacagagaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgt 273  Q
    ||||||||||||||||||||||||   ||||| || ||  ||||| |||||||||||  ||||| |  ||||       |||||||||| ||||| || |    
T  23347230 ttgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 23347329  T
Q  274 ggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||| ||| || |||  |||||||||||||||||||||||    
T  23347330 ggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
Q  270 ttgtggcagtgggaggaagagatgttagcggagtgtagggcttta 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta 33630334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 322
Target Start/End: Complemental strand, 25318315 - 25318083
Alignment:
Q  90 aggagggttggtgatgattctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacag 189  Q
    ||||| |||||||||||  ||||||| | ||||||||| ||||||||| || |||| | |||  |  ||||  | ||| || | |||||||||||||||     
T  25318315 aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa 25318216  T
Q  190 agaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaaga 289  Q
    |||||||| | ||||| |||||  ||||| | |||||||||    ||| |  ||||       |||||||||  ||||| || |||||||||||||| ||    
T  25318215 agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga 25318116  T
Q  290 gatgttagcggagtgtagggctttacttcttga 322  Q
    | || ||| ||||||||||||||||||||||||    
T  25318115 gttgctagaggagtgtagggctttacttcttga 25318083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 322
Target Start/End: Complemental strand, 26205809 - 26205577
Alignment:
Q  90 aggagggttggtgatgattctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacag 189  Q
    ||||| |||||||||||  ||||||| | ||||||||| ||||||||| || |||| | |||  |  ||||  | ||| || | |||||||||||||||     
T  26205809 aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa 26205710  T
Q  190 agaataagctcatgtctgtggcaaacttgttctctgttgatctggagcagcaggggnnnnnnnggaggtggaggcgtagattgtggcagtgggaggaaga 289  Q
    |||||||| | ||||| |||||  ||||| | |||||||||    ||| |  ||||       |||||||||  ||||| || |||||||||||||| ||    
T  26205709 agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga 26205610  T
Q  290 gatgttagcggagtgtagggctttacttcttga 322  Q
    | || ||| ||||||||||||||||||||||||    
T  26205609 gttgctagaggagtgtagggctttacttcttga 26205577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 15674123 - 15674054
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||| ||||| ||||||||||||||||| ||| || |||  ||||| |||||||||||||||||    
T  15674123 ggaggtggagacgtaggttgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 19255934 - 19255869
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||||||  ||||||||| |||||||||| ||||||||||||||| || |||||    
T  19255934 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttga 19255869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 33640212 - 33640147
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||||||  ||||||||| |||||||||| ||||||||||||||| || |||||    
T  33640212 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttga 33640147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 322
Target Start/End: Complemental strand, 1683303 - 1683269
Alignment:
Q  288 gagatgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||||||||||||||||||||||||||    
T  1683303 gagatgttagcggagtgtagggctttacttcttga 1683269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 503378 - 503443
Alignment:
Q  257 gtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| ||||||| |  ||||||||| |||||||||| ||||||||||||||| || |||||    
T  503378 gtggaggcggagattgtaggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttga 503443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 5085873 - 5085926
Alignment:
Q  258 tggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggct 311  Q
    |||||||| |||||||||  ||||||||| |||||||||| |||||||||||||    
T  5085873 tggaggcggagattgtgggcgtgggaggaggagatgttagaggagtgtagggct 5085926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 15492 - 15555
Alignment:
Q  253 ggaggtggaggcgtagattgtggcagtgggaggaagagatgttagcggagtgtagggctttact 316  Q
    |||||||| | || |||||||||  ||||||||| || ||||||| ||||||||||||||||||    
T  15492 ggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact 15555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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