View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_113 (Length: 322)
Name: NF9913A_low_113
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_113 |
 | |
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| [»] scaffold0029 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] chr4 (11 HSPs) |
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| [»] chr3 (11 HSPs) |
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| [»] chr5 (5 HSPs) |
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| [»] chr2 (14 HSPs) |
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| [»] chr7 (9 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0131 (1 HSPs) |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0418 (2 HSPs) |
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| [»] scaffold0112 (1 HSPs) |
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Alignment Details
Target: scaffold0029 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 134449 - 134765
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg |
105 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||| ||||||||||| || || | || |||||||||| || ||||||||||||||||| |||| |
|
|
| T |
134449 |
gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg |
134548 |
T |
|
| Q |
106 |
attctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134549 |
gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
134648 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134649 |
tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
134748 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
134749 |
agggctttacttcttga |
134765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 312276 - 312592
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg |
105 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||| ||||||||||| || || | || |||||||||| || ||||||||||||||||| |||| |
|
|
| T |
312276 |
gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg |
312375 |
T |
|
| Q |
106 |
attctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
312376 |
gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
312475 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
312476 |
tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
312575 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
312576 |
agggctttacttcttga |
312592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 327730 - 328046
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg |
105 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||| ||||||||||| || || | || |||||||||| || ||||||||||||||||| |||| |
|
|
| T |
327730 |
gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg |
327829 |
T |
|
| Q |
106 |
attctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327830 |
gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
327929 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327930 |
tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
328029 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
328030 |
agggctttacttcttga |
328046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 8654726 - 8654984
Alignment:
| Q |
64 |
gtgggtggtttggtggtcacgtggctaggagggttggtgatgattctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccg |
163 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654726 |
gtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccg |
8654825 |
T |
|
| Q |
164 |
tttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggaga |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654826 |
tttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggaga |
8654925 |
T |
|
| Q |
264 |
cgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654926 |
cgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
8654984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 3129577 - 3129890
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |||||||||||| || || | || ||||||| || ||| ||||||||||||||||| |||| |
|
|
| T |
3129577 |
gtttcgtgttggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatg |
3129676 |
T |
|
| Q |
106 |
attctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3129677 |
gagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtc |
3129776 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
3129777 |
tgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atgttagcggagtgt |
3129873 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3129874 |
agggctttacttcttga |
3129890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 110 - 322
Target Start/End: Complemental strand, 47541366 - 47541154
Alignment:
| Q |
110 |
tgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtg |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47541366 |
tgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaataagttcatgtctgtg |
47541267 |
T |
|
| Q |
210 |
gcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtaggg |
309 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||| | |||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
47541266 |
gcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgttagcggagtgtaggg |
47541167 |
T |
|
| Q |
310 |
ctttacttcttga |
322 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47541166 |
ctttacttcttga |
47541154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 138 - 322
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
| Q |
138 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
237 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
7662966 |
ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc |
7663065 |
T |
|
| Q |
238 |
agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|| |||| |||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
7663066 |
agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga |
7663150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 120 - 322
Target Start/End: Complemental strand, 2631829 - 2631627
Alignment:
| Q |
120 |
ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt |
219 |
Q |
| |
|
||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
2631829 |
ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc |
2631730 |
T |
|
| Q |
220 |
tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct |
319 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
2631729 |
tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttct |
2631630 |
T |
|
| Q |
320 |
tga |
322 |
Q |
| |
|
||| |
|
|
| T |
2631629 |
tga |
2631627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 20675454 - 20675251
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||| || ||||| |||||| |
|
|
| T |
20675454 |
gttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttg |
20675355 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| | |||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||| ||||||||| |
|
|
| T |
20675354 |
ctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttc |
20675255 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
20675254 |
ttga |
20675251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||||| ||||||||||||||||||||| || |
|
|
| T |
23873240 |
tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg |
23873339 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
23873340 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
23873387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||||| ||||||||||||||||||| || || |
|
|
| T |
55298996 |
tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg |
55298897 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
55298896 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
55298849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 8486699 - 8486892
Alignment:
| Q |
129 |
gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg |
228 |
Q |
| |
|
||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || | |||||| | ||||||| |
|
|
| T |
8486699 |
gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg |
8486798 |
T |
|
| Q |
229 |
attcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||| |||||||||||| |||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
8486799 |
attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga |
8486892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 7662904 - 7662959
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtga |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7662904 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtggtggtgagggtga |
7662959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
| Q |
257 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||| || || |||||| |||||||||||| ||||||| ||||||||||||||| || ||||| |
|
|
| T |
49926112 |
gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga |
49926177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 30166942 - 30167255
Alignment:
| Q |
9 |
tcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgatt |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30166942 |
tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt |
30167041 |
T |
|
| Q |
109 |
ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| | |||| ||| |
|
|
| T |
30167042 |
ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgt |
30167141 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg |
308 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30167142 |
ggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg |
30167241 |
T |
|
| Q |
309 |
gctttacttcttga |
322 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30167242 |
actttacttcttga |
30167255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 38 - 322
Target Start/End: Original strand, 49731559 - 49731843
Alignment:
| Q |
38 |
tagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgattctgatacgttgttttggttggataggtgg |
137 |
Q |
| |
|
||||| |||||||||||| || || || || ||||||| || ||| ||||||||||||||||| |||| |||| || ||||||||||| ||||||||| |
|
|
| T |
49731559 |
taggggtagtgatggtgatggagagtgcggctggtttgttgatcatgtggctaggagggttggagatggagctgacacattgttttggtttgataggtgg |
49731658 |
T |
|
| Q |
138 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
49731659 |
ttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagc |
49731758 |
T |
|
| Q |
238 |
agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
49731759 |
agcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttga |
49731843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 2813208 - 2813411
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
2813208 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
2813307 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
2813308 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
2813407 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
2813408 |
ttga |
2813411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 29309840 - 29309637
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
29309840 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg |
29309741 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| ||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||| ||||||| |
|
|
| T |
29309740 |
ctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttc |
29309641 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
29309640 |
ttga |
29309637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 6176186 - 6176389
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||| ||||||||||| |||||| || || |||||| |
|
|
| T |
6176186 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttg |
6176285 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
6176286 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttc |
6176385 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
6176386 |
ttga |
6176389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
| Q |
201 |
atgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgg |
300 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||| ||||||||||||| ||||||||||||||| || ||||| |||||||||||||||| ||||||||| |
|
|
| T |
9379447 |
atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg |
9379348 |
T |
|
| Q |
301 |
agtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
9379347 |
agtgtagggcattactacttga |
9379326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
| Q |
250 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
23602074 |
tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
23602002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
| Q |
258 |
tggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
25872955 |
tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga |
25873019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
| Q |
250 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag |
307 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| || |||| |||||||||||| |
|
|
| T |
8943653 |
tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag |
8943596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
| Q |
279 |
tgggaggaggacttgttagcggagtgtagggctttactt |
317 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
46248738 |
tgggaggaagacttgttaggggagtgtagggctttactt |
46248776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 48569906 - 48569944
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
48569906 |
gtgggaggaggacttggtagaggagtgtagggctttact |
48569944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 10486515 - 10486831
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |||||||||||| || || || | ||||||| || ||| ||||||||||||||||| |||| |
|
|
| T |
10486515 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatg |
10486614 |
T |
|
| Q |
106 |
attctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10486615 |
gagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtc |
10486714 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10486715 |
tgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgt |
10486814 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10486815 |
agggctttacttcttga |
10486831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 90 - 322
Target Start/End: Complemental strand, 34481408 - 34481176
Alignment:
| Q |
90 |
aggagggttggtgatgattctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag |
189 |
Q |
| |
|
||||| |||||||||| ||||||| | |||||||| ||||||||||||||||| |||||| ||||||| | || || || ||||||||||||||| |
|
|
| T |
34481408 |
aggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacag |
34481309 |
T |
|
| Q |
190 |
agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga |
289 |
Q |
| |
|
||||||||| ||||||||||||| | ||| | |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34481308 |
agaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggg |
34481209 |
T |
|
| Q |
290 |
cttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||| ||| |||||||||||||||||||||||| |
|
|
| T |
34481208 |
gttgctagaggagtgtagggctttacttcttga |
34481176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 587859 - 587745
Alignment:
| Q |
208 |
tggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag |
307 |
Q |
| |
|
||||| ||||||| ||||| ||||||||| ||||||| | | ||||||||||| |||||| | ||| |||||||||||| |||||| ||||||||| |
|
|
| T |
587859 |
tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag |
587760 |
T |
|
| Q |
308 |
ggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
587759 |
ggctttacttcttga |
587745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 35122404 - 35122617
Alignment:
| Q |
109 |
ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||||||||| ||| || || |||||| ||||||| ||| | ||||| || || ||||| |
|
|
| T |
35122404 |
ctgatacgttgttttggtctcataggtggtttgatgatgttccttttagtgagcggtttcgtaggttgtttgacttagctgagaacaaaaccatttctgt |
35122503 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg |
308 |
Q |
| |
|
||| | |||| ||| |||| ||||||| | |||||| ||||||||||||||||||||||||| ||||||||| || |||| |||| |||| |
|
|
| T |
35122504 |
ggcgaatatgttctctcttgacctggagcagggaggggttgggtggaggtggagacgtaggttgtgggcttgggaggagactttattagaggagcttagg |
35122603 |
T |
|
| Q |
309 |
gctttacttcttga |
322 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
35122604 |
gctttactgcttga |
35122617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 27795756 - 27795720
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
27795756 |
gtgggaggaggacttggtagaggagtgtagggcttta |
27795720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 45422062 - 45421748
Alignment:
| Q |
9 |
tcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgatt |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45422062 |
tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt |
45421963 |
T |
|
| Q |
109 |
ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| | |||| ||| |
|
|
| T |
45421962 |
ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgt |
45421863 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcag-tggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag |
307 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||| |||| ||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
45421862 |
ggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtag |
45421763 |
T |
|
| Q |
308 |
ggctttacttcttga |
322 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
45421762 |
ggcttttcttcttga |
45421748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 120 - 322
Target Start/End: Complemental strand, 13550555 - 13550353
Alignment:
| Q |
120 |
ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt |
219 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| || |||| | || || || |||||||||||||||||||||||| ||| | ||||| |||||| |
|
|
| T |
13550555 |
ttttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgc |
13550456 |
T |
|
| Q |
220 |
tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct |
319 |
Q |
| |
|
| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||| ||||||||| |||| |
|
|
| T |
13550455 |
tttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattct |
13550356 |
T |
|
| Q |
320 |
tga |
322 |
Q |
| |
|
||| |
|
|
| T |
13550355 |
tga |
13550353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 119 - 321
Target Start/End: Original strand, 26894320 - 26894522
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
26894320 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg |
26894419 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| ||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
26894420 |
ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
26894519 |
T |
|
| Q |
319 |
ttg |
321 |
Q |
| |
|
||| |
|
|
| T |
26894520 |
ttg |
26894522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 119 - 321
Target Start/End: Original strand, 26899759 - 26899961
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
26899759 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg |
26899858 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| ||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
26899859 |
ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
26899958 |
T |
|
| Q |
319 |
ttg |
321 |
Q |
| |
|
||| |
|
|
| T |
26899959 |
ttg |
26899961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||| | ||| ||||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
43627875 |
tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg |
43627776 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
43627775 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
43627728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
| Q |
226 |
ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||| | |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
31085452 |
ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga |
31085548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
| Q |
226 |
ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
33548197 |
ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
33548101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 13551008 - 13550882
Alignment:
| Q |
120 |
ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt |
219 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| || |||| | || || || |||||||||||||||||||||||| ||| | ||||| |||||| |
|
|
| T |
13551008 |
ttttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgc |
13550909 |
T |
|
| Q |
220 |
tatctgttgattcggagcagtgggggg |
246 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
13550908 |
tttctgttgattcggagcagtgggggg |
13550882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
| Q |
267 |
aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
22052911 |
aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga |
22052856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
| Q |
267 |
aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36804196 |
aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact |
36804147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36804400 |
gtgggaggaggacttgttagaggagtgtagggctttact |
36804362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 26679266 - 26679225
Alignment:
| Q |
120 |
ttttggttggataggtggttaggggatgttcctttttgtgtc |
161 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
26679266 |
ttttggttggataggtgggttggtgatgttcctttttgtgtc |
26679225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 22725136 - 22725212
Alignment:
| Q |
109 |
ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagtta |
185 |
Q |
| |
|
|||| ||| |||||||||| ||||| ||||| ||| |||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
22725136 |
ctgacacgatgttttggtttgatagatggttggggccggttcctttttgtgtgtgattccgtaggttgtttgagtta |
22725212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 40176941 - 40176905
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
40176941 |
gtgggaggaggacttggtagaggagtgtagggcttta |
40176905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 15653303 - 15653616
Alignment:
| Q |
9 |
tcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgatt |
108 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||| | |
|
|
| T |
15653303 |
tcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggat |
15653402 |
T |
|
| Q |
109 |
ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||| | |||||| | |
|
|
| T |
15653403 |
ctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctat |
15653502 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg |
308 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15653503 |
ggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg |
15653602 |
T |
|
| Q |
309 |
gctttacttcttga |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15653603 |
gctttacttcttga |
15653616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 46624235 - 46623966
Alignment:
| Q |
9 |
tcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgatt |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| | |||| || |
|
|
| T |
46624235 |
tcgtgttggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggtt |
46624136 |
T |
|
| Q |
109 |
ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| ||||||||| | |||||||| |
|
|
| T |
46624135 |
ctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgt |
46624036 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcag |
278 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| |||| ||||||||||| ||||| ||||||||| |
|
|
| T |
46624035 |
ggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag |
46623966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 13440485 - 13440282
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
13440485 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
13440386 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||||| ||||||||||||||||||| || ||| ||||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
13440385 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttc |
13440286 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
13440285 |
ttga |
13440282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 12378329 - 12378627
Alignment:
| Q |
12 |
tgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgattctg |
111 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| || | ||||| |||| |||| ||||||| | | || ||| |||||||||||||||| ||| |
|
|
| T |
12378329 |
tgttggtggagggaggtgagttgtattagggaaaggggaggtgatggtggtagtggatggtttgatagccatgtgttgcggagggttggtgatgaggctg |
12378428 |
T |
|
| Q |
112 |
atacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggc |
211 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||||| | |||| || | | ||| ||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
12378429 |
atacaacgttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggc |
12378528 |
T |
|
| Q |
212 |
agacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggc |
310 |
Q |
| |
|
| | ||||| | |||| | ||| ||| |||||||| ||||| |||| |||| || ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12378529 |
aaatttgttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc |
12378627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
| Q |
250 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
45943152 |
tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga |
45943080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 316
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
| Q |
193 |
ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt |
292 |
Q |
| |
|
|||||| | |||| |||||||||||||| ||| | |||| | || ||||| | ||||||||||||||| || ||||||||||| ||||||||||| | |
|
|
| T |
43105669 |
ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat |
43105570 |
T |
|
| Q |
293 |
gttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||| ||||||||||| ||||| |
|
|
| T |
43105569 |
gttagcagagtgtagggcgttact |
43105546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
| Q |
279 |
tgggaggaggacttgttagcggagtgtagggctttactt |
317 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
27723973 |
tgggaggaagacttgttaggggagtgtagggctttactt |
27724011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
| Q |
251 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||| || | ||||||||| |||||||||||| || |||| |||||||||| ||||||| |
|
|
| T |
41339825 |
gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact |
41339760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 17856178 - 17856106
Alignment:
| Q |
109 |
ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttga |
181 |
Q |
| |
|
|||||||||||||||||| |||||||||| || |||||||||||| ||| || || |||||| ||||||| |
|
|
| T |
17856178 |
ctgatacgttgttttggtctcataggtggtttggtgatgttccttttagtgagcggtttcgtaggttgtttga |
17856106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 7452897 - 7452581
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
7452897 |
gtttcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatg |
7452798 |
T |
|
| Q |
106 |
attctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
7452797 |
gttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtc |
7452698 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||| || |||| ||||||| |
|
|
| T |
7452697 |
tgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgt |
7452598 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7452597 |
agggctttacttcttga |
7452581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 120 - 319
Target Start/End: Original strand, 16420719 - 16420918
Alignment:
| Q |
120 |
ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt |
219 |
Q |
| |
|
||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
16420719 |
ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc |
16420818 |
T |
|
| Q |
220 |
tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct |
319 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||| |||||||||||||||| |
|
|
| T |
16420819 |
tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct |
16420918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
| Q |
251 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||| | |||| ||||||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12134628 |
gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact |
12134563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
| Q |
273 |
tggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
19384572 |
tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga |
19384621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 13879354 - 13879390
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
13879354 |
gtgggaggaggacttggtagaggagtgtagggcttta |
13879390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 36306321 - 36306013
Alignment:
| Q |
14 |
ttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgattctgat |
113 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||| | |||||||||| ||||||||||||| || |||||||||||||||||||| |||| ||||||| |
|
|
| T |
36306321 |
ttggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgat |
36306222 |
T |
|
| Q |
114 |
acgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcag |
213 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
36306221 |
acgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcag |
36306122 |
T |
|
| Q |
214 |
acttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttt |
313 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||| | ||||||||||| ||||| |||||||||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
36306121 |
acttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggcttt |
36306022 |
T |
|
| Q |
314 |
acttcttga |
322 |
Q |
| |
|
||||||||| |
|
|
| T |
36306021 |
acttcttga |
36306013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 21528685 - 21528390
Alignment:
| Q |
31 |
gtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatgattctgatacgttgttttggttgga |
130 |
Q |
| |
|
||||| |||||| |||||||||||| || || | || ||||||| || ||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
21528685 |
gtcgtcttaggggtagtgatggtgatggagagagcggatggtttgttgatcatgtggctaggagggttggagatgaagctgatacgttgttttggttgga |
21528586 |
T |
|
| Q |
131 |
taggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||| |
|
|
| T |
21528585 |
taggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttgat |
21528486 |
T |
|
| Q |
231 |
tcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggag----tgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
21528485 |
tcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttga |
21528390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 37531008 - 37530795
Alignment:
| Q |
109 |
ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||||| |||||| ||||||| | | || || ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
37531008 |
ctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgt |
37530909 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg |
308 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
37530908 |
ggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagg |
37530809 |
T |
|
| Q |
309 |
gctttacttcttga |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37530808 |
gctttacttcttga |
37530795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
32353061 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg |
32353160 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
32353161 |
gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga |
32353208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 48073139 - 48073342
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
48073139 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
48073238 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
48073239 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttc |
48073338 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
48073339 |
ttga |
48073342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
| Q |
241 |
ggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48265548 |
ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga |
48265629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
| Q |
250 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||||||||| || | |||||||||||||| ||||||||||| |
|
|
| T |
30970447 |
tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga |
30970519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 4144 - 4337
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatg |
105 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |||||||||||| || || | || ||||||| || ||| |||||| |||||||||| |||| |
|
|
| T |
4144 |
gtttcgtggtggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatg |
4243 |
T |
|
| Q |
106 |
attctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtt |
199 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
4244 |
gagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataagtt |
4337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 90 - 322
Target Start/End: Complemental strand, 25318315 - 25318083
Alignment:
| Q |
90 |
aggagggttggtgatgattctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag |
189 |
Q |
| |
|
||||| ||||||||||| ||||||| | ||||||||| ||||||||| || |||| | |||| || |||| | || || || |||||||||||||| |
|
|
| T |
25318315 |
aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa |
25318216 |
T |
|
| Q |
190 |
agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga |
289 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
25318215 |
agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga |
25318116 |
T |
|
| Q |
290 |
cttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||| ||| |||||||||||||||||||||||| |
|
|
| T |
25318115 |
gttgctagaggagtgtagggctttacttcttga |
25318083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 90 - 322
Target Start/End: Complemental strand, 26205809 - 26205577
Alignment:
| Q |
90 |
aggagggttggtgatgattctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag |
189 |
Q |
| |
|
||||| ||||||||||| ||||||| | ||||||||| ||||||||| || |||| | |||| || |||| | || || || |||||||||||||| |
|
|
| T |
26205809 |
aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa |
26205710 |
T |
|
| Q |
190 |
agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga |
289 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
26205709 |
agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga |
26205610 |
T |
|
| Q |
290 |
cttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||| ||| |||||||||||||||||||||||| |
|
|
| T |
26205609 |
gttgctagaggagtgtagggctttacttcttga |
26205577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 23347175 - 23347378
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
23347175 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttg |
23347274 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
23347275 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
23347374 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
23347375 |
ttga |
23347378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggg----ggttttgtggaggtggagacgtaggt |
270 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| ||||| | ||||||||||| |||| ||||| || ||||||||||||||||||||| |
|
|
| T |
15674205 |
tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt |
15674106 |
T |
|
| Q |
271 |
tgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||||| ||||||||||||||||| |
|
|
| T |
15674105 |
tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga |
15674054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
| Q |
270 |
ttgtggcagtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33630378 |
ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta |
33630334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
| Q |
251 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | || |||| ||||| |||| ||||| |
|
|
| T |
4474998 |
gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta |
4474935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 322
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
| Q |
292 |
tgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1683299 |
tgttagcggagtgtagggctttacttcttga |
1683269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 138 - 322
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
| Q |
138 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
237 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
8088 |
ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc |
7989 |
T |
|
| Q |
238 |
agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|| |||| |||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
7988 |
agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga |
7904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 8149 - 8095
Alignment:
| Q |
6 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtgatggtgagggtga |
61 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8149 |
gtttcgtgttggtggggg-aggtgagtcgtattagggatagtggtggtgagggtga |
8095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 15490 - 15555
Alignment:
| Q |
251 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||| | || || |||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
15490 |
gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact |
15555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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