View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_115 (Length: 319)
Name: NF9913A_low_115
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_115 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 9567466 - 9567148
Alignment:
| Q |
1 |
agagacaggcttttgagactggtgaagattttgtcgcctaaggtcgtgttatttgtggagcaggagtcaaacacaaacacatctccatttttaccaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567466 |
agagacaggcttttgagactggtgaagattttgtcgcctaaggtcgtgttatttgtggagcaggagtcaaacacaaacacatctccatttttaccaaggt |
9567367 |
T |
|
| Q |
101 |
ttgctgagactttgaattattacactgcgatgtttgaatcaattgatgtggctcttcctagagatgataagaagagaattaatgcagaacaacactgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567366 |
ttgctgagactttgaattattacactgcaatgtttgaatcaattgatgtggctcttcctagagatgataagaagagaattaatgcagaacaacactgtgt |
9567267 |
T |
|
| Q |
201 |
ggctcgcgataccgtgaacatcatagcttgtgagggagatgagagagtcgaaagacatgaactgttcggaaagtggaaggcaagattttcaatggcaggt |
300 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567266 |
ggctcgcgatatcgtgaatatcatagcttgtgagggagatgagagattcgaaagacatgaactgttcggaaagtggaaggcaagattttcaatggcaggt |
9567167 |
T |
|
| Q |
301 |
tttgtaccgttactgttga |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9567166 |
tttgtaccgttactgttga |
9567148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University