View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_118 (Length: 318)
Name: NF9913A_low_118
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_118 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 55198693 - 55198384
Alignment:
| Q |
9 |
aatgacgtatggagctttgatacaactaagaattgttggaagctactgcaagctggtggaagtgtctttcctcccaggtaatactttgcaatgttctttt |
108 |
Q |
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| T |
55198693 |
aatgacgtatggagctttgatacaactaagaattgttggaagctactgcaatgtggtggaagtgtctttcctcccaggtaatactttgcaatgttctttt |
55198594 |
T |
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| Q |
109 |
gttatagcttgcaccagttcaatgaaagccatttatcatgtgattatacagtaggggaaaaaagttgtttaataatttgcgactttgtgtgcgtgtgtat |
208 |
Q |
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| T |
55198593 |
gttatagcttgcaccagttaaatgaaagccatttatcatgtgattatacagtaggggaaaaaagttgtttaataatttgcgactttgtgtgtgtgtgtat |
55198494 |
T |
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| Q |
209 |
acatttgtaagacattttacgtattcaagtagttaggttaacagtatgtttattcatgtgtatacaacttattgaactgtatattgtaactttgtgataa |
308 |
Q |
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| T |
55198493 |
acatttgttagacattttacgtattcaagtagttaggttaacagtatgtttattcatgtgtatacaacttattgaactgtatattgtaactttgtgataa |
55198394 |
T |
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| Q |
309 |
ggtgcagtga |
318 |
Q |
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| T |
55198393 |
ggtgcagtga |
55198384 |
T |
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