View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_121 (Length: 314)
Name: NF9913A_low_121
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_121 |
 | |
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| [»] chr1 (6 HSPs) |
| |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] chr6 (8 HSPs) |
| |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0510 (1 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
| | |
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| [»] scaffold0045 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 45018891 - 45018590
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45018891 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
45018792 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45018791 |
tgagtgacattttataagctttcagtcgattctttccttctctttcatttcctttatttgctttcgattccagctattttgacaaatatttgcttctgtt |
45018692 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45018691 |
gttttatcttggcacttatgactcataattttgtttaattattactttgttcacttattgtgggatattatgttt-aaacaattgctttaattagtattg |
45018593 |
T |
|
| Q |
312 |
tga |
314 |
Q |
| |
|
||| |
|
|
| T |
45018592 |
tga |
45018590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 41294172 - 41293872
Alignment:
| Q |
13 |
agacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41294172 |
agacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttatt |
41294073 |
T |
|
| Q |
113 |
gagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgttg |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
41294072 |
gagtgacattttataagctttcagttgattctttccttctctttcatttcctttatttgctttcgattccatttattttgacaaatatttgcttctgttg |
41293973 |
T |
|
| Q |
213 |
ttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattgt |
312 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41293972 |
ttttatcttggcacttatg-ctcataactttgtttaattattattttgttcacttattgtgggatattatgtttaaaacaattgctttaattagtattgt |
41293874 |
T |
|
| Q |
313 |
ga |
314 |
Q |
| |
|
|| |
|
|
| T |
41293873 |
ga |
41293872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 41302651 - 41302953
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41302651 |
gagacgatccagatagagttccaagtgcaactggcggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
41302750 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
41302751 |
tgggtgacattttataagctttcagtcgattcgttccttctctttcatttcctttatttgctttcgattccaactactttgacaaatatttgcttctgtt |
41302850 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41302851 |
gttttatcttgccacttatgactcataactttgtttaattattactttgttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
41302950 |
T |
|
| Q |
312 |
tga |
314 |
Q |
| |
|
||| |
|
|
| T |
41302951 |
tga |
41302953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 39056839 - 39057046
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39056839 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagttcacctttat |
39056938 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgt-ccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
39056939 |
tgagtgacattttataagctttcagtcgattctttcccttctctttcatttcctttatttgctttcgattccagctgctttgacaaatatttgcttctgt |
39057038 |
T |
|
| Q |
211 |
tgttttat |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
39057039 |
tgttttat |
39057046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 5445021 - 5444936
Alignment:
| Q |
195 |
aaatatttgcttctgttgttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatatt |
280 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
5445021 |
aaatatttgcttctgttgttttattttggcactcatgacttataactttgtttaattattactttgttcacttattgtgggatatt |
5444936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 35087100 - 35086961
Alignment:
| Q |
17 |
gatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacc-tttattgag |
115 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||| |||||| || |
|
|
| T |
35087100 |
gatccagacagagtttctagtgcaactgatggttcagatgatgatgacatgcagagttgaggaggaaaagaa-tgacttgaaagctcaccgtttattaag |
35087002 |
T |
|
| Q |
116 |
tgaca-ttttataagctttcagtcgattctgtccttctctt |
155 |
Q |
| |
|
||||| ||||||||||||| |||| ||||| | |||||||| |
|
|
| T |
35087001 |
tgacatttttataagcttttagtcaattcttttcttctctt |
35086961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 14290819 - 14290518
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14290819 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
14290720 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14290719 |
tgagtgacattttataagctttcagtcgattctttccttctctttcatttcctttatttgctttcgattccagctattttgacaaatatttgcttctgtt |
14290620 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14290619 |
gttttatcttggcacttatgactcataattttgtttaactattactttgttcacttattgtgggatattatgttt-aaacaattgctttaattagtattg |
14290521 |
T |
|
| Q |
312 |
tga |
314 |
Q |
| |
|
||| |
|
|
| T |
14290520 |
tga |
14290518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 8190007 - 8190309
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8190007 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
8190106 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttccttta-tttgctttcgattctagctattttgacaaatatttgcttctgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
8190107 |
tgagtgacattttataagctttcagtcgattctttccttctctttcatttcctttattttgctttcgattccaactattttgacaaatatttgcttctgt |
8190206 |
T |
|
| Q |
211 |
tgttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtatt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || || || ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8190207 |
tgttttatcttggcacttatgactcataattttgtttaactactactttgttcacttattatgggatattatgttt-aaacaattgctttaattagtatt |
8190305 |
T |
|
| Q |
311 |
gtga |
314 |
Q |
| |
|
|||| |
|
|
| T |
8190306 |
gtga |
8190309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 15944103 - 15943991
Alignment:
| Q |
56 |
gatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttattgagtgacattttataagctttcagtcgattctgtccttctctt |
155 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15944103 |
gatgatgacatgcagagttgaggaggaagagaagagacgtgaaagctcacctttattgagtgacattttataagctttcagtcgattctttccttctctt |
15944004 |
T |
|
| Q |
156 |
tcatttcctttat |
168 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
15944003 |
tcatttcttttat |
15943991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 48350644 - 48350798
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttg-aggaggaagagaagagac-gtgaaagctcacc-tt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||| ||| |||||||||||| || |
|
|
| T |
48350644 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatcatgacatgcagggttgaaagaggaaaagaa-tgactttgaaagctcaccgtt |
48350742 |
T |
|
| Q |
109 |
tattgagtgaca-ttttat-aagctttcagtcgattctgtccttctctttcatttc |
162 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||||| || |||||||||||||| |
|
|
| T |
48350743 |
tattgagtgacatttttataaagctttcagtctattctttctttctctttcatttc |
48350798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 1943679 - 1943576
Alignment:
| Q |
56 |
gatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttattgagtgacattttataagctttcagtcgattctgtccttctctt |
155 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |||||||||||| ||| ||||||| || || ||||||||||||| ||||| |||||||| | |
|
|
| T |
1943679 |
gatgatgacatgcaaagttgaggaggaagagaatagacttgaaagctcacccttaatgagtgatatcttttaagctttcagtcaattctttccttctcct |
1943580 |
T |
|
| Q |
156 |
tcat |
159 |
Q |
| |
|
|||| |
|
|
| T |
1943579 |
tcat |
1943576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 1946345 - 1946407
Alignment:
| Q |
56 |
gatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttattgagtga |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | || |||||||||||| ||| ||||||| |
|
|
| T |
1946345 |
gatgatgacatgcaaagttgaggaggaagagaataaacttgaaagctcacccttaatgagtga |
1946407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 4710042 - 4710344
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4710042 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagttcacctttat |
4710141 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
4710142 |
tgagtgacattttataagctttcagtcgattctttccttctctttcatttcctttatttgctttcgattccatttattttgacaattatttgcttctgtt |
4710241 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710242 |
gttttatcttggcacttatgactcataactttgtttaattattattttgttcacttattgtaggatattatgtttaaaacaattgctttaattagtattg |
4710341 |
T |
|
| Q |
312 |
tga |
314 |
Q |
| |
|
||| |
|
|
| T |
4710342 |
tga |
4710344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 4715652 - 4715953
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715652 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
4715751 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4715752 |
tgagtgacattttataagctttcagtcgattctttccctctctttcatttcctttatttgctttcgattccagctattttgacaaatatttgcttctgtt |
4715851 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4715852 |
gttttatcttggcacttatgactcataattttgtttaattattactttgttcacttattgtgggatattatgttt-aaacaattgctttaattagtattg |
4715950 |
T |
|
| Q |
312 |
tga |
314 |
Q |
| |
|
||| |
|
|
| T |
4715951 |
tga |
4715953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 7066798 - 7067032
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066798 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
7066897 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7066898 |
tgagtgagattttataagctttcagtcgattctttccttctcttttatttcctttatttgctttcgattccagctattttgacaaatatttgcttctgtt |
7066997 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
7066998 |
gttttatcttggcacttatgactcataattttgtt |
7067032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 4023751 - 4024071
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4023751 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagttcacctttat |
4023850 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgt-ccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
4023851 |
tgagtgacattttataagctttcagtcgattctttcccttctcttttatttcctttatttgctttcgattccagctattttaacaaatatttgcttctgt |
4023950 |
T |
|
| Q |
211 |
tgttttatcttggcacttatgactcataactttg------------------tttaattattatttggttcacttattgtgggatattatgtttaaaaca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
4023951 |
tgttttatcttggcacttatgactcataattttgttcacttattttaactattttaactattactttgttcacttattgtgggatattatgttt-aaaca |
4024049 |
T |
|
| Q |
293 |
attgctttaattagtattgtga |
314 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4024050 |
attgctttaattagtattgtga |
4024071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 153 - 314
Target Start/End: Original strand, 4735576 - 4735737
Alignment:
| Q |
153 |
ctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgttgttttatcttggcacttatgactcataactttgtttaatta |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4735576 |
ctttcatttcctttatttgctttcgattccatttattttgacaaatatttgcttctgttgttttatcttggcacttatgactcataactttgtttaatta |
4735675 |
T |
|
| Q |
253 |
ttatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattgtga |
314 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4735676 |
ttattttgttcacttattgtaggatattatgtttaaaacaatagctttaattagtattgtga |
4735737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 34651909 - 34651685
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34651909 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaaaagaagagacgtgaaagctcacctttat |
34651810 |
T |
|
| Q |
112 |
tgagtgaca------------------ttttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttga |
193 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||| ||||| ||||| |
|
|
| T |
34651809 |
tgagtgacatttttttttttattttttttttttaagctttcagtcgattctttccttttctttcatttcccttatttgctttcatttccagctactttga |
34651710 |
T |
|
| Q |
194 |
caaatatttgcttctgttgttttat |
218 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34651709 |
caaatatttgcttctgttgttttat |
34651685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 4735458 - 4735581
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4735458 |
gagacgatccagacagagtcccaagtgcaactggtggttcagataatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
4735557 |
T |
|
| Q |
112 |
tgagtgacattttataagctttca |
135 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4735558 |
tgagtgacattttataagctttca |
4735581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 7067064 - 7067116
Alignment:
| Q |
260 |
gttcacttattgtgggatattatgtttaaaacaattgctttaattagtattgtga |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7067064 |
gttcacttattgtgg-atattatgtttaaa-caattgctttaattagtattgtga |
7067116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 9574117 - 9574418
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9574117 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaaaagaagagacgtgaaagctcacctttat |
9574216 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
9574217 |
tgagtgacattttataagctttcagtcgattctttccttctctttcatttcctttatttgctttcaattccagctattttgacaaatatttgcttctgtt |
9574316 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9574317 |
gttttatcatggcacttatgactcataattttgtttaactattactttgttcacttattgtgggatattatgttt-aaacaattgctttaattagtattg |
9574415 |
T |
|
| Q |
312 |
tga |
314 |
Q |
| |
|
||| |
|
|
| T |
9574416 |
tga |
9574418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 34838366 - 34838668
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34838366 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagttcacctttat |
34838465 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgt-ccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34838466 |
tgagtgacattttataagctttcagtcgattctttcccttctctttcatttcctttatttgctttcgattccagctattttgacaaatatttgcttctgt |
34838565 |
T |
|
| Q |
211 |
tgttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtatt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || || || ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34838566 |
tgttttatcttggcacttatgactcataattttgtttaactactactttgttcacttattgtgggatattatgttt-aaacaattgctttaattagtatt |
34838664 |
T |
|
| Q |
311 |
gtga |
314 |
Q |
| |
|
|||| |
|
|
| T |
34838665 |
gtga |
34838668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 2160708 - 2160420
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
2160708 |
gagacgatccagatagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggagaaagagaatagacatgaaagctcacctttat |
2160609 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2160608 |
tgagtgacaatttataagctttca-------------ttctctttcatttcctttatttgctttcgattccagctattttgacaaatatttgcttctgtt |
2160522 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2160521 |
gttttatcttggcacttatgactcataattttgtttaattattattttgttcacttattgtgggatattatgttt-aaacaattgctttaattagtattg |
2160423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 6012 - 6314
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
111 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6012 |
gagacgatccagatagagttccaagtgcaactggcggttcagatgatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttat |
6111 |
T |
|
| Q |
112 |
tgagtgacattttataagctttcagtcgattctgtccttctctttcatttcctttatttgctttcgattctagctattttgacaaatatttgcttctgtt |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
6112 |
tgggtgacattttataagctttcagtcgattcgttccttctctttcatttcctttatttgctttcgattccaactactttgacaaatatttgcttctgtt |
6211 |
T |
|
| Q |
212 |
gttttatcttggcacttatgactcataactttgtttaattattatttggttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6212 |
gttttatcttgccacttatgactcataactttgtttaattattactttgttcacttattgtgggatattatgtttaaaacaattgctttaattagtattg |
6311 |
T |
|
| Q |
312 |
tga |
314 |
Q |
| |
|
||| |
|
|
| T |
6312 |
tga |
6314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 52735 - 52616
Alignment:
| Q |
56 |
gatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttattgagtgacattttataagctttcagtcgattctgtccttctctt |
155 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52735 |
gatgatgacatgcagagttgagaaggaagagaagagacgtgaaagctcacctttattgagtgacattttataagctttcagtcgattctttccttctctt |
52636 |
T |
|
| Q |
156 |
tcatttcctttatttgcttt |
175 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
52635 |
tcatttcttttatatgcttt |
52616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 8010482 - 8010636
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttg-aggaggaagagaagagac-gtgaaagctcacc-tt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||| ||| |||||||||||| || |
|
|
| T |
8010482 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatcatgacatgcagggttgaaagaggaaaagaa-tgactttgaaagctcaccgtt |
8010580 |
T |
|
| Q |
109 |
tattgagtgaca-ttttat-aagctttcagtcgattctgtccttctctttcatttc |
162 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||||| || |||||||||||||| |
|
|
| T |
8010581 |
tattgagtgacatttttataaagctttcagtctattctttctttctctttcatttc |
8010636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 29977020 - 29976866
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttg-aggaggaagagaagagac-gtgaaagctcacc-tt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||| ||| |||||||||||| || |
|
|
| T |
29977020 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatcatgacatgcagggttgaaagaggaaaagaa-tgactttgaaagctcaccgtt |
29976922 |
T |
|
| Q |
109 |
tattgagtgaca-ttttat-aagctttcagtcgattctgtccttctctttcatttc |
162 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||||| || |||||||||||||| |
|
|
| T |
29976921 |
tattgagtgacatttttataaagctttcagtctattctttctttctctttcatttc |
29976866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 30019622 - 30019776
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttg-aggaggaagagaagagac-gtgaaagctcacc-tt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||| ||| |||||||||||| || |
|
|
| T |
30019622 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatcatgacatgcagggttgaaagaggaaaagaa-tgactttgaaagctcaccgtt |
30019720 |
T |
|
| Q |
109 |
tattgagtgaca-ttttat-aagctttcagtcgattctgtccttctctttcatttc |
162 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||||| || |||||||||||||| |
|
|
| T |
30019721 |
tattgagtgacatttttataaagctttcagtctattctttctttctctttcatttc |
30019776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 2963006 - 2962852
Alignment:
| Q |
12 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatgacatgcagggttg-aggaggaagagaagagac-gtgaaagctcacc-tt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||| ||| |||||||||||| || |
|
|
| T |
2963006 |
gagacgatccagacagagtcccaagtgcaactggtggttcagatgatcatgacatgcagggttgaaagaggaaaagaa-tgactttgaaagctcaccgtt |
2962908 |
T |
|
| Q |
109 |
tattgagtgaca-ttttat-aagctttcagtcgattctgtccttctctttcatttc |
162 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||| | || |||||||||||||| |
|
|
| T |
2962907 |
tattgagtgacatttttataaagctttcagtctattttttctttctctttcatttc |
2962852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 22324680 - 22324585
Alignment:
| Q |
56 |
gatgatgacatgcagggttgaggaggaagagaagagacgtgaaagctcacctttattgagtgacattttataagctttcagtcgattctgtccttc |
151 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||| |||||||||| | ||| ||||||| || || ||||||||||||| ||||| |||||| |
|
|
| T |
22324680 |
gatgatgacatgcaaagatgaggaggaagagaatagacttgaaagctcaaccttaatgagtgatatcttttaagctttcagtcaattctttccttc |
22324585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 6318 - 6418
Alignment:
| Q |
60 |
atgacatgcagggttgaggaggaagagaagagacgtgaaagctcaccttt-attgagtgacatttt---ataagctttcagtcgattctgtccttctctt |
155 |
Q |
| |
|
|||||||||| || |||| | |||||||| |||| |||||||||||||| ||||||||| ||||| | |||||||||||||||||| || ||||||| |
|
|
| T |
6318 |
atgacatgcatggatgagaaagaagagaaaagactcgaaagctcacctttgattgagtgatattttaaaaaaagctttcagtcgattctttctttctctt |
6417 |
T |
|
| Q |
156 |
t |
156 |
Q |
| |
|
| |
|
|
| T |
6418 |
t |
6418 |
T |
|
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