View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_129 (Length: 307)
Name: NF9913A_low_129
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_129 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 102 - 281
Target Start/End: Original strand, 23915235 - 23915414
Alignment:
| Q |
102 |
gggttcttaatttataggcattatgatgcagtaccnnnnnnnnaaggacttcactcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattca |
201 |
Q |
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| T |
23915235 |
gggttcttaatttataggcattataatgcagtaccttttttttaaggacttcactcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattca |
23915334 |
T |
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| Q |
202 |
ccattaatattcttggttttttgttagtaactcagttcataccagtaatgacgtactatgacgaggtgcgactcatgcat |
281 |
Q |
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| T |
23915335 |
ccattaatattcttggttttttgttagtaactcagttcataccagtaatgacgtactatgacgaggtgcgactcatgcat |
23915414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 23915125 - 23915185
Alignment:
| Q |
11 |
ataaagatcattgaaatggcgagcaaaatggataaataagttgaagatgccattttctctt |
71 |
Q |
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| T |
23915125 |
ataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattttctctt |
23915185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 23922776 - 23922834
Alignment:
| Q |
13 |
aaagatcattgaaatggcgagcaaaatggataaataagttgaagatgccattttctctt |
71 |
Q |
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| T |
23922776 |
aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctctt |
23922834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 23922954 - 23923022
Alignment:
| Q |
155 |
ctcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattcaccattaatattcttggtttttt |
223 |
Q |
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| T |
23922954 |
ctcaatcaaaatgagttaatgaatgtagtcagaaacaaataaagtcaccattaatattcttggtttttt |
23923022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 23922872 - 23922935
Alignment:
| Q |
73 |
tgaggagaatgaagaagagaagttacttggggttcttaatttataggcattatgatgcagtacc |
136 |
Q |
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| T |
23922872 |
tgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtacc |
23922935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 25803226 - 25803278
Alignment:
| Q |
11 |
ataaagatcattgaaatggcgagcaaaatggataaataagttgaagatgccat |
63 |
Q |
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| T |
25803226 |
ataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtgccat |
25803278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 35079810 - 35079864
Alignment:
| Q |
11 |
ataaagatcattgaaatggcgagcaaaatggataaataagttgaagatgccattt |
65 |
Q |
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| T |
35079810 |
ataaagatcattgaaataacgagcaaaacggataaacaagctgaaggtgccattt |
35079864 |
T |
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