View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_133 (Length: 299)

Name: NF9913A_low_133
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_133
NF9913A_low_133
[»] chr7 (1 HSPs)
chr7 (11-299)||(49007695-49007987)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 49007987 - 49007695
Alignment:
Q  11 tgatatgaaaacacccgcaacaacttttattctgtccaagttatccacttgagtagcaagtgttcggttcttgtcttcacacaccacgatcttgtttctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49007987 tgatatgaaaacacccgcaacaacttttattctgtccaagttatccacttgagtagcaagtgttcggttcttgtcttcacacaccacgatcttgtttctt 49007888  T
Q  111 gctctgatgagttctttcaaattatcacatgagctcaagaaaaccattgggaccttgcctgaagaaaaattccccggatagagagacaaaccagtgactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49007887 gctctgatgagttctttcaaattatcacatgagctcaagaaaaccattgggaccttgcctgaagaaaaattccccggatagagagacaaaccagtgactt 49007788  T
Q  211 tggctccatttccaagtgttaaatccccgtgaaattcacgatccattgtgccagcagcaactgttattaccta----agataaagttagttaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  49007787 tggctccatttccaagtgttaaatccccgtgaaattcacgatccattgtgccagcagcaactgttattacctattagagataaagttagttaa 49007695  T

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