View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_135 (Length: 299)

Name: NF9913A_low_135
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_135
NF9913A_low_135
[»] chr1 (12 HSPs)
chr1 (1-293)||(9229786-9230079)
chr1 (54-292)||(9161993-9162231)
chr1 (54-278)||(9170833-9171057)
chr1 (69-292)||(9156081-9156304)
chr1 (54-293)||(9218901-9219140)
chr1 (54-292)||(9118221-9118459)
chr1 (57-278)||(9200400-9200621)
chr1 (105-292)||(1868284-1868471)
chr1 (54-290)||(1816170-1816406)
chr1 (105-292)||(1842675-1842862)
chr1 (54-152)||(9178941-9179039)
chr1 (55-290)||(1856639-1856874)
[»] chr3 (1 HSPs)
chr3 (222-292)||(40568360-40568430)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 9230079 - 9229786
Alignment:
Q  1 ggcggtttcattttgctacgccaactttctaaaagagaag-cgcatcaggaactgctcaaattttcaaagaagatgaacttaagaaagctaccaacaact 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9230079 ggcggtttcattttgctacgccaactttctaaaagagaagacgcatcaggaactactcaaattttcaaagaagatgaacttaagaaagctaccaacaact 9229980  T
Q  100 atgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9229979 atgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataat 9229880  T
Q  200 ggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9229879 ggatgccacccaagtagagcaattcataaatgaggtggttgttttgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttg 9229786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 292
Target Start/End: Complemental strand, 9162231 - 9161993
Alignment:
Q  54 gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa 153  Q
    |||||||| |||| |||||| ||||| |||||||| ||||| ||||| || || || ||||| || |||||||||||||| ||||| |||| |||||||     
T  9162231 gctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagttttcaaaggag 9162132  T
Q  154 ttctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaat 253  Q
    |  || |||| ||||  || || ||  |||| || ||||||||||| ||||| |  ||| | ||||| ||||| || ||||| |||||||||||||||||    
T  9162131 tcttaccagataacaaaatcgtcgctgtcaaaaaatccaaaataatagatgcaaatcaaattgagcagttcattaacgaggtagttgttctgtcccaaat 9162032  T
Q  254 aaatcatagaaatgttgtcaaactcttgggatgttgttt 292  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9162031 aaatcatagaaatgttgtcaaactcttgggatgttgttt 9161993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 54 - 278
Target Start/End: Complemental strand, 9171057 - 9170833
Alignment:
Q  54 gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa 153  Q
    |||||||| |||| |||||| |||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||||| ||||| ||||||||||||     
T  9171057 gctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaaggag 9170958  T
Q  154 ttctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaat 253  Q
    || || | |||||||  || || ||  | || || ||||||||||| || || |  ||| | ||||||||||| |||||||| ||||||||| |||||||    
T  9170957 ttttacctgacaacaaaatcgtcgctgtaaaaaaatccaaaataattgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaat 9170858  T
Q  254 aaatcatagaaatgttgtcaaactc 278  Q
    ||||||||| |||||||||||||||    
T  9170857 aaatcataggaatgttgtcaaactc 9170833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 69 - 292
Target Start/End: Complemental strand, 9156304 - 9156081
Alignment:
Q  69 gaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaaca 168  Q
    ||||| |||||||||||||| ||||| ||||| || || |  ||||| ||||||||||||||||| ||||| |||| ||||||| || || | |||||||    
T  9156304 gaagaggaacttaagaaagccaccaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaaca 9156205  T
Q  169 ggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaatcatagaaatgt 268  Q
      || |||||  | || || || |||||||| ||||| |  ||| | ||||| || || |||||||| ||||| || |||||||||||||| ||||||||    
T  9156204 aaatcgttgctgtaaaaaaatcaaaaataatagatgcaaatcaaatcgagcagtttattaatgaggtagttgtcctatcccaaataaatcacagaaatgt 9156105  T
Q  269 tgtcaaactcttgggatgttgttt 292  Q
    ||||||||||||||||||||||||    
T  9156104 tgtcaaactcttgggatgttgttt 9156081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 54 - 293
Target Start/End: Complemental strand, 9219140 - 9218901
Alignment:
Q  54 gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa 153  Q
    |||||||| ||||  ||||| |||||||||||||| ||||| ||||| || || || ||||| || || ||||||||||| ||||| |||| ||||||||    
T  9219140 gctcaaatattcacggaagaggaacttaagaaagccaccaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaa 9219041  T
Q  154 ttctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaat 253  Q
    || |  | || ||||  ||||| ||  |||| |||||||||||||| || || |  ||  | ||||||||||| |||||||| |||||||||||||||||    
T  9219040 ttttgcccgataacaaaattgtcgctgtcaaaaagtccaaaataatagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaat 9218941  T
Q  254 aaatcatagaaatgttgtcaaactcttgggatgttgtttg 293  Q
    ||||||||| || ||||||||||| || || |||||||||    
T  9218940 aaatcataggaacgttgtcaaacttttagggtgttgtttg 9218901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 292
Target Start/End: Original strand, 9118221 - 9118459
Alignment:
Q  54 gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa 153  Q
    ||||| || |||| |||| | |||||||| ||||||||||||| ||| || || || ||||| ||||| |||||||||||||||||  ||| |||||||     
T  9118221 gctcagatattcacagaaaaggaacttaaaaaagctaccaacagctacgacgaaagcttaatcattggaagaggaggtttcggtacaattttcaaaggag 9118320  T
Q  154 ttctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaat 253  Q
    || || | || ||||| || || ||  |||| ||||||| |||||| || || |  ||| | ||||||||||| |||||||| ||| |||||||||||||    
T  9118321 ttttacccgataacagaatcgtggctgtcaaaaagtccagaataatagacgcaaatcaaatcgagcaattcattaatgaggtagttattctgtcccaaat 9118420  T
Q  254 aaatcatagaaatgttgtcaaactcttgggatgttgttt 292  Q
    ||||||||| |||||||||||||| || || ||||||||    
T  9118421 aaatcataggaatgttgtcaaacttttagggtgttgttt 9118459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 278
Target Start/End: Complemental strand, 9200621 - 9200400
Alignment:
Q  57 caaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattc 156  Q
    ||||| |||| |||||| |||||||||||||| ||||| || || || || || ||||| || || ||||||||||| ||||| |||||||||||| ||     
T  9200621 caaatattcacagaagaggaacttaagaaagccaccaaaaaatacgacgaaagcttaatcatcggtagaggaggttttggtacagtttacaaaggagttt 9200522  T
Q  157 tagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaa 256  Q
    || | || ||||  ||||| ||  | || || ||||||||||| || || |  ||| | ||||||||||| |||||||| ||||||||| ||||||||||    
T  9200521 tacctgataacaaaattgtcgctgtaaaaaaatccaaaataattgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaa 9200422  T
Q  257 tcatagaaatgttgtcaaactc 278  Q
    |||||| |||||||||||||||    
T  9200421 tcataggaatgttgtcaaactc 9200400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 1868284 - 1868471
Alignment:
Q  105 gagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatg 204  Q
    |||| |||||| ||||||| ||| ||||| ||||| |||| ||||||| ||||||  || || || || ||||| ||||| || || |||||||| |||     
T  1868284 gagaatttaatcattggcaaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagata 1868383  T
Q  205 ccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgttt 292  Q
      | |||| | || |||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||    
T  1868384 gaagccaaatcgatcaattcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgttt 1868471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 290
Target Start/End: Complemental strand, 1816406 - 1816170
Alignment:
Q  54 gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa 153  Q
    ||||| |||||||||||| ||||||| | ||||||||| ||||||| ||| ||||| ||||| || || ||||||||||| ||||| |||| ||||||      
T  1816406 gctcacattttcaaagaaaatgaactaaggaaagctactaacaactttgatgagagcttaatcataggtagaggaggttttggtacagttttcaaagggg 1816307  T
Q  154 ttctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaat 253  Q
      || |  || || || ||||| || ||||| |||||||||| ||| || |  | |||| | || |||||||| || ||||||| |||| | || |||||    
T  1816306 aacttgatgataatagaattgtggctatcaaaaagtccaaaacaatagacgaaagccaaattgaacaattcattaacgaggtggatgttgtctctcaaat 1816207  T
Q  254 aaatcatagaaatgttgtcaaactcttgggatgttgt 290  Q
    |||||| || ||||| |||||||||||||| ||||||    
T  1816206 aaatcacaggaatgtggtcaaactcttggggtgttgt 1816170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 1842675 - 1842862
Alignment:
Q  105 gagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatg 204  Q
    |||| |||||| ||||||| ||| ||||| ||||| |||||||||||| ||||||  || || || || ||||| ||||| || || |||||||| |||     
T  1842675 gagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagata 1842774  T
Q  205 ccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgttt 292  Q
      | |||| |  | |||||||| ||||||||  || |||| || |||||||||||||| |||||||||||||||||||| ||||||||    
T  1842775 gaagccaaatcaatcaattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgttt 1842862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 9179039 - 9178941
Alignment:
Q  54 gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga 152  Q
    |||||||| |||| |||||| |||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||||| ||||| ||||||||||||    
T  9179039 gctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaagga 9178941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 290
Target Start/End: Original strand, 1856639 - 1856874
Alignment:
Q  55 ctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaat 154  Q
    |||| |||||| ||||| ||||||| | |||||| || ||||| | ||| ||||| ||||| || || | ||||||||| ||||| |||||||||||       
T  1856639 ctcacattttcgaagaaaatgaactaaggaaagccactaacaaatttgatgagagcttaatcataggtaaaggaggttttggtacagtttacaaagggga 1856738  T
Q  155 tctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaata 254  Q
     || |  || || || |||||||| ||||| ||||| |||| ||| ||    | |||| | || |||||||| |||||||||| |||| | || ||||||    
T  1856739 acttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaata 1856838  T
Q  255 aatcatagaaatgttgtcaaactcttgggatgttgt 290  Q
    ||||| |||||||| ||||||||||| || ||||||    
T  1856839 aatcacagaaatgtggtcaaactcttagggtgttgt 1856874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 40568360 - 40568430
Alignment:
Q  222 ttcataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgttt 292  Q
    ||||| ||||| ||||| ||||| |||||||| || ||||||||||| || || |||||||| ||||||||    
T  40568360 ttcatcaatgaagtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgttt 40568430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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