View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_137 (Length: 298)
Name: NF9913A_low_137
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_137 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 28507189 - 28506900
Alignment:
| Q |
9 |
atgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctagagatga |
108 |
Q |
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| T |
28507189 |
atgagaagccacttgtgttgttgacgtatctttcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctagagatga |
28507090 |
T |
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| Q |
109 |
gagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatagagaaaatattaagaacatg |
208 |
Q |
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| T |
28507089 |
gagagatgggtctttcacaagtgattcggttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatagagaaaatattaagaacatg |
28506990 |
T |
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| Q |
209 |
aaggacttgtttgtcgatatggaaagacaagataaatatgttaatgacttgttgagccacctgacaagtcttttgaaacactgattgtga |
298 |
Q |
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| T |
28506989 |
aaggacttgtttgtcaatattgaaagacaagataaatatgttaataacttgttgagccaccttacaagtcttttgaaacactgattgtga |
28506900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 28494643 - 28494401
Alignment:
| Q |
9 |
atgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctagagatga |
108 |
Q |
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| T |
28494643 |
atgagaagccacttgtgttgttaacgtgtcttgcagatcaaggaataaatgcaagaatgttggaagaaaagaagatgggatactcagtgcctagagatga |
28494544 |
T |
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| Q |
109 |
gagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatagagaaaatattaagaacatg |
208 |
Q |
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| T |
28494543 |
gagagatgggtctttcacaagtgatatggtggctcactcgattaggttagttatggttgaagaagagggaaggatctatagggataatattaagaacatg |
28494444 |
T |
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| Q |
209 |
aaggacttgtttgtcgatatggaaagacaagataaatatgtta |
251 |
Q |
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| T |
28494443 |
aaggatttgtttgtcaatcctgaaagacaagatagatatgtta |
28494401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 28491322 - 28491086
Alignment:
| Q |
11 |
gagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctagagatgaga |
110 |
Q |
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| T |
28491322 |
gagaagccacttgtgttgatgacatttcttgtagaccagggaataaatgcgaaggtgttggaagaaaagaagatggcatacacggtgcctagagatgagc |
28491223 |
T |
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| Q |
111 |
gagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatagagaaaatattaagaacatgaa |
210 |
Q |
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| T |
28491222 |
aagatgggtcattcacaagtgactcagtggctcgcacaattagactagttatgcttgaagaagaagggaggatatatagggaaaatattaaagaggtgaa |
28491123 |
T |
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| Q |
211 |
ggacttgtttgtcgatatggaaagacaagataaatat |
247 |
Q |
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| T |
28491122 |
ggacttgtttgtcaatattgaaagacaagatagatat |
28491086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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