View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_145 (Length: 293)
Name: NF9913A_low_145
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_145 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 2 - 293
Target Start/End: Original strand, 4652898 - 4653189
Alignment:
| Q |
2 |
tgtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttggttactataatc |
101 |
Q |
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| T |
4652898 |
tgtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttggttactataatc |
4652997 |
T |
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| Q |
102 |
ccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatactgatagaaatggaaagcacactcgtca |
201 |
Q |
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| T |
4652998 |
ccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatactgatagaaatggaaagcacactcgtca |
4653097 |
T |
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| Q |
202 |
gtgctcgtcatgacactaacacatgtgattgcactcagttaaataatttttcaaattatcattgatgtcgacgtgtctatgtaagtacatga |
293 |
Q |
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| T |
4653098 |
gtgcccgtcatgacactaacacatgtgattgtactcatttaaataatttttcaaattatcattgatgtcgacgtgtctatggaagtacatga |
4653189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 17426931 - 17427103
Alignment:
| Q |
3 |
gtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttggttactataatcc |
102 |
Q |
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| T |
17426931 |
gtttaggatgcaaaaacaaaccattttaccgtgttatggctgctgatagcagatctccgagagatggaaagcacctcgaagttcttggttactataatcc |
17427030 |
T |
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| Q |
103 |
cttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatact |
175 |
Q |
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| T |
17427031 |
cttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagttattaatact |
17427103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 17428840 - 17428908
Alignment:
| Q |
192 |
acactcgtcagtgctcgtcatgacactaacacatgtgattgcactcagttaaataatttttcaaattat |
260 |
Q |
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| T |
17428840 |
acactcgtaagtgcccgttatgacactaacacatgtgattgcattcaattagttaattttttaaattat |
17428908 |
T |
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