View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_148 (Length: 291)
Name: NF9913A_low_148
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_148 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 44853556 - 44853287
Alignment:
| Q |
11 |
caaagacgagatcgaatatggaccaaaatgatttgttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccggcccattg |
110 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44853556 |
caaagacgagatcgaatatggaccaaaataattttttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccgacccattg |
44853457 |
T |
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| Q |
111 |
taaactacatgattcgattctaaccctagaaaccacggcaccaacggcgcggataaatatcattttcctttttatcttttaccgnnnnnnntaatgataa |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
44853456 |
taaactacatgactcgattctaaccctagaaaccacggcaccaacggcgcg-----------ttttcctttttatcttttacccaaaaaaataatgataa |
44853368 |
T |
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| Q |
211 |
aataccattttctttttcatcttttaccacaaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttga |
291 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44853367 |
aataccattttctttttcatcttttaccataaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttga |
44853287 |
T |
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