View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_151 (Length: 289)
Name: NF9913A_low_151
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_151 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 140 - 289
Target Start/End: Complemental strand, 31114667 - 31114517
Alignment:
| Q |
140 |
gtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggatc |
239 |
Q |
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| T |
31114667 |
gtccatgaatcgaccaaagtgaacccagttcactgtgtttctgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggacc |
31114568 |
T |
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| Q |
240 |
cacctctttgaatggacattggttct-aaagcttatttgattgggagaaaa |
289 |
Q |
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| T |
31114567 |
caactcttagaaaggacattggttctaaaagcttatttgattgggagaaaa |
31114517 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 31114739 - 31114681
Alignment:
| Q |
14 |
atggacatcaaccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat |
72 |
Q |
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| T |
31114739 |
atggacatcaaccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat |
31114681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 31088611 - 31088499
Alignment:
| Q |
113 |
ttgagagtgggggttgaacataattgcgtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagata |
212 |
Q |
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| T |
31088611 |
ttgagagtgtgggttgaacataattgtatccacgaatcaacgaaagtgaacccacttctctgtgtttctttgatagaagcttatatcatcaaagcggaca |
31088512 |
T |
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| Q |
213 |
atggagagtgagt |
225 |
Q |
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| T |
31088511 |
acagagagtgagt |
31088499 |
T |
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