View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_152 (Length: 289)
Name: NF9913A_low_152
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_152 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 30750732 - 30750461
Alignment:
| Q |
12 |
aagaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgcaccaattccttacttcttgctcacc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |
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| T |
30750732 |
aagaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttgaatccttgcaccaattccttgcttcttcctcacc |
30750633 |
T |
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| Q |
112 |
cattaacatttaaatcttctttaggtcgagtgagaggataagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaac |
211 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30750632 |
cattaacatttaaatcttctttaggtcgagtgagacggtaagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaac |
30750533 |
T |
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| Q |
212 |
aatctaaaacacatgcatccaatcttcttagtgggaggtgaagattagatggttctcccatggtgatgaaga |
283 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30750532 |
aatctaaaacacatgcatccaactttcttagtgggaggtgaagattagatggttctcccatggtgatgaaga |
30750461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 30760625 - 30760552
Alignment:
| Q |
13 |
agaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30760625 |
agaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
30760552 |
T |
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