View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_153 (Length: 288)
Name: NF9913A_low_153
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_153 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 17006309 - 17006024
Alignment:
| Q |
1 |
ttaagcaaagtatatatgatattatccaacacatttttctcaatatgcatcgggtcaagattatgacgcagaagattgtccttccaatatggaagttcaa |
100 |
Q |
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| T |
17006309 |
ttaagcaaagtatatatgatattatccaacacatttttctcgatatgcatcgggtcaagattatgacgcaaaagattgtccttccaatatggaagttcaa |
17006210 |
T |
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| Q |
101 |
agaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttgcctttccnnnnnnnnnctggtttggagggtcaccttgtgtaggt |
200 |
Q |
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| T |
17006209 |
agaatatgcttttcttcttctagattggagggtcatcttttgtagattgcctcttgcctgtcc--tttttttctggtttggagggtcaccttgtgtaggt |
17006112 |
T |
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| Q |
201 |
tgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttatgttttcaacatgttcaagaactt |
288 |
Q |
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| T |
17006111 |
tgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttatgttttcaacctgttgaagaactt |
17006024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 2788 - 3050
Alignment:
| Q |
1 |
ttaagcaaagtatatatgatattatccaacacatttttctcaatatgcatcgggtcaagattatgacgcagaagattgtccttccaatatggaagttcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788 |
ttaagcaaagtatatatgatattatccaacacatttttctcgatatgcatcgggtcaagattatgacgcagaagattgtccttccaatatggaagttcaa |
2887 |
T |
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| Q |
101 |
agaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttgcctttccnnnnnnnnnctggtttggagggtcaccttgtgtaggt |
200 |
Q |
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| T |
2888 |
agaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttgcctgtcc--tttttttctggtttggagggtcaccttgtgtaggt |
2985 |
T |
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| Q |
201 |
tgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttat |
265 |
Q |
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| T |
2986 |
tgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttat |
3050 |
T |
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