View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_16 (Length: 480)
Name: NF9913A_low_16
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 369
Target Start/End: Original strand, 35970985 - 35971326
Alignment:
| Q |
21 |
atcagggcaaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttggggg |
120 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35970985 |
atcagggcaaaaggttcaaa-gaaagggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaagg-----gggg |
35971078 |
T |
|
| Q |
121 |
aattgggttggtgatattaggaaaccaaaaggtagtaaactttggttaggtacttttcttactgctcaagaaactgctcttggcttatgattatgctgca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35971079 |
aattgggttggtgatattaggaaaccaaaaggtagtaaactttggttaggtacttctcttactgctcaagaaactgctcttg-cttatgattatgctgcc |
35971177 |
T |
|
| Q |
221 |
agagtcatgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttcattaaggaataattgaaggattcttcattggcttctgctag |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
35971178 |
agagtcatgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttcattaaggaatatttgaaggattcttcattggcttctactag |
35971277 |
T |
|
| Q |
321 |
ctgctgttcttcggtagtaacaactcctgtaaaatttgagacaacagct |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35971278 |
ctgctgttcttcggtagtaacaactcctgtaaaatctgagacaacagct |
35971326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 35978650 - 35978312
Alignment:
| Q |
30 |
aaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattgggtt |
129 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||||||||||||| | |||||||| ||| ||||||||||||| |||||||||||||| |||||| |
|
|
| T |
35978650 |
aaaggttcaaa-gaaagggtgtatgaaaggtaaaggaggacctcaaaactcggagaataagtatcgaggtgttagacagaggacttgggggaaatgggtt |
35978552 |
T |
|
| Q |
130 |
ggtgatattaggaaaccaaa---aggtagtaaactttggttaggtacttttcttactgctcaagaaactgctcttggcttatgattatgctgcaagagtc |
226 |
Q |
| |
|
| ||| |||||| ||||||| ||| |||| |||||||||||||||||||| || ||||||||| |||||||| ||||||||||||||||| |||| | |
|
|
| T |
35978551 |
gctgagattagggaaccaaatagaggaagtagactttggttaggtacttttccgacggctcaagaagctgctctt-gcttatgattatgctgctagagcc |
35978453 |
T |
|
| Q |
227 |
atgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttc-attaaggaataattgaaggattcttcattggcttctgctagctgct |
325 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| | |||||||||| || ||| ||||||| ||||||||||||||| || |||||||||| | |
|
|
| T |
35978452 |
atgtatggtccttctgcgcgacttaactttcctgatatctcagattatagatctattcaggaatatttgaaggattcttcagcagcagctgctagctgtt |
35978353 |
T |
|
| Q |
326 |
gttcttcggtagtaacaactcctgtaaaatttgagacaaca |
366 |
Q |
| |
|
|||||||||| | |||||| |||| | || |||||||||| |
|
|
| T |
35978352 |
gttcttcggtggcaacaacgcctgcgacatctgagacaaca |
35978312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 28 - 320
Target Start/End: Complemental strand, 35975625 - 35975333
Alignment:
| Q |
28 |
caaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattggg |
127 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
35975625 |
caaaaggttcaaa-gaaaggatgtatgaaagggaaaggaggacctcaaaactcaga--ataaatatagaggtgtcagacaaaggacttgggggaaatggg |
35975529 |
T |
|
| Q |
128 |
ttggtgatattaggaaaccaaa---aggtagtaaactttggttaggtacttttcttactgctcaagaaactgctcttggcttatgattatgctgcaagag |
224 |
Q |
| |
|
| | ||| |||||| |||| || || |||| |||| |||||||||||| | ||| ||||||||| | |||||| |||||||||| |||||| |||| |
|
|
| T |
35975528 |
tggctgaaattagggaacctaatagtgggagtagacttaagttaggtactttccctacagctcaagaagccgctctt-gcttatgattctgctgctagag |
35975430 |
T |
|
| Q |
225 |
tcatgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttc-attaaggaataattgaaggattcttcattggcttctgctag |
320 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||| | |||||||||| || |||||||||| |||| ||||||||||| |||| ||||||| |
|
|
| T |
35975429 |
ctatgtatggtacttctgcacgacttaacttgcccgatatctcagattatagctctgttaaggaatatttgatggattcttcatcggctgctgctag |
35975333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 469
Target Start/End: Original strand, 35971586 - 35971690
Alignment:
| Q |
368 |
cttttgggccatacagataa---taataatacaattggtgaatttggagggatgcaaagtttgaattagattcttaaaaattgatttggataatgatgtc |
464 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35971586 |
cttttgggccatacagataataataataatacaattggtgaatttggagggatgcaaagtttgaattagattcttaaaaattgatttggataatgatgtg |
35971685 |
T |
|
| Q |
465 |
catct |
469 |
Q |
| |
|
||||| |
|
|
| T |
35971686 |
catct |
35971690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 37650927 - 37651016
Alignment:
| Q |
40 |
aagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattgggtt |
129 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || ||||| | | ||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
37650927 |
aagaaagggtgtatgaaaggtaaaggagggccggaaaactcccggtgtaattatagaggtgtgagacaaaggacttgggggaaatgggtt |
37651016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University