View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_161 (Length: 285)
Name: NF9913A_low_161
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_161 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 52033805 - 52033557
Alignment:
| Q |
18 |
cagcaaagccaataccataggaaatagaaaagaagatactcatattaatgtgaccttgattattatatgcatccatatctatctcaaacttgttgttcac |
117 |
Q |
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| T |
52033805 |
cagcaaagccaataccataggaaatagaaaagaagatactcatattaatgtgaccttgattattatatgcatccatatctatctcaaacttgttgttcac |
52033706 |
T |
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| Q |
118 |
aatagctgtcacattgtatctcacaccttgagcagtgaatagttcattagagtatatggggaagtttttggcattatagagattaaatccccaataagcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033705 |
aatagctgtcacattgtatctcacaccttgagcactgaatagttcattagagtatatggggaagtttttggcattatagagattaaatccccaataagcc |
52033606 |
T |
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| Q |
218 |
gttggaataagaatgtagattaataaaatgtagccaacaaggatgttaa |
266 |
Q |
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| T |
52033605 |
gttggaataagaatgtagattaataaaatgtagccaacaaggatgttaa |
52033557 |
T |
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