View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_164 (Length: 283)
Name: NF9913A_low_164
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_164 |
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| [»] scaffold0101 (1 HSPs) |
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Alignment Details
Target: scaffold0101 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 31574 - 31378
Alignment:
| Q |
7 |
tttggtgttgcaggaaaagtaattttgtagcatacgattacttatggttatatcatatgcacacgtctctggttgattatttgtttttgttggtttggac |
106 |
Q |
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| T |
31574 |
tttggtgtcgcaggaaaagtaattttgtaacatacgattacttatgattatatcatatgcactcctctctggttgattatttgtttttgttggtttggac |
31475 |
T |
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| Q |
107 |
tgcagcgtggtttgtcaaaataataatatccttcacagcatagagtctcaagttttgatttagtgatatctagtaaatcctagctgtttcaatctta |
203 |
Q |
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| T |
31474 |
tgcagcatggtttgacaaaataataatatccttcacagcatagagcctcaagttttgatttagtgatatctagtaaatccttgttgtttcaatctta |
31378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 74 - 264
Target Start/End: Complemental strand, 17247186 - 17246996
Alignment:
| Q |
74 |
tctggttgattatttgtttttgttggtttggactgcagcgtggtttgtcaaaataataatatccttcacagcatagagtctcaagttttgatttagtgat |
173 |
Q |
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| T |
17247186 |
tctggttgattatttgtttttgttggtttagacagcagtatggtttgtcaaaataataatatccttcacagcatagagcctgaagttttgatttggtgat |
17247087 |
T |
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| Q |
174 |
atctagtaaatcctagctgtttcaatcttacattgttgattctaagaacaaatgtttcttgaattgttaaattgttaatttactttttggt |
264 |
Q |
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| T |
17247086 |
atctagtaaatcctttttgtttcaatcttacattcttgattctaagaacaaatgtttcttgaattgttaaattgttaatttactttttggt |
17246996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 74 - 258
Target Start/End: Complemental strand, 17257821 - 17257638
Alignment:
| Q |
74 |
tctggttgattatttgtttttgttggtttggactgcagcgtggtttgtcaaaataataatatccttcacagcatagagtctcaagttttgatttagtgat |
173 |
Q |
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| T |
17257821 |
tctggttgattatttgtttttgttggtttagactgcagtttggtttgtcaaaataataatatccttcacagcatagagcctgaagttttgatttggtgat |
17257722 |
T |
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| Q |
174 |
atctagtaaatcctagctgtttcaatcttacattgttgattctaagaacaaatgtttcttgaattgttaaattgttaatttactt |
258 |
Q |
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| T |
17257721 |
atctagtaaatcctttttgtttcaatcttacattgttgattctaagaacaaatgtttcttgaa-tgttaaattgttaatttactt |
17257638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 17240533 - 17240386
Alignment:
| Q |
90 |
tttttgttggtttggactgcagcgtggtttgtcaaaataataatatccttcacagcatagagtctcaagttttgatttagtgatatctagtaaatcctag |
189 |
Q |
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| T |
17240533 |
tttttgttggtttagactgcagcgtggtttgtcaaaataataatatccttcacagcatagagcctcaagttttgatttggtgata---agtaaatcct-t |
17240438 |
T |
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| Q |
190 |
ctgtttcaatcttacattgttgattctaagaacaaatgtttcttgaattgttaaatt |
246 |
Q |
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| T |
17240437 |
ttttttcaatc-----tggttgattctaagaacaaatgtttcttgaattgttaaatt |
17240386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 17333452 - 17333405
Alignment:
| Q |
236 |
attgttaaattgttaatttactttttggtgttacacaaaaggatatga |
283 |
Q |
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| T |
17333452 |
attgttaaattgttaatttactttttggtgttacatgagaggatatga |
17333405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 17247451 - 17247406
Alignment:
| Q |
14 |
ttgcaggaaaagtaattttgtagcatacgattacttatggttatat |
59 |
Q |
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| T |
17247451 |
ttgcaggaaaagtaattttgtaacatacgatttcttctggttatat |
17247406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 17247315 - 17247268
Alignment:
| Q |
8 |
ttggtgttgcaggaaaagtaattttgtagcatacgattacttatggtt |
55 |
Q |
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| T |
17247315 |
ttggtcttgcaggaaaagtaattttgtaacatacgatttcttctggtt |
17247268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 17310196 - 17310161
Alignment:
| Q |
236 |
attgttaaattgttaatttactttttggtgttacac |
271 |
Q |
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| T |
17310196 |
attgttaaattgttaatttactttttggcgttacac |
17310161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 17240659 - 17240607
Alignment:
| Q |
7 |
tttggtgttgcaggaaaagtaattttgtagcatacgattacttatggttatat |
59 |
Q |
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| T |
17240659 |
tttggtcttgtaggaaaagtaatttcgtaacatacgatttcttctggttatat |
17240607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 17257951 - 17257915
Alignment:
| Q |
7 |
tttggtgttgcaggaaaagtaattttgtagcatacga |
43 |
Q |
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| T |
17257951 |
tttggtcttgcaggaaaagtaattttgtaacatacga |
17257915 |
T |
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