View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_166 (Length: 282)
Name: NF9913A_low_166
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_166 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 49007964 - 49008243
Alignment:
| Q |
1 |
gttgttgcgggtgttttcatatcaaatagttctgaggatataacatattacattcaaactaagtttccatctannnnnnngaatccaattaatggagaac |
100 |
Q |
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| T |
49007964 |
gttgttgcgggtgttttcatatcaaatagttctgaggatataacatattacattcaaactaagtttccatctatttttttgaatccaattaatggagaac |
49008063 |
T |
|
| Q |
101 |
ttatcaaggatttcattaagtgcaatactaatccaaaagcaagcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtgtggatagtta |
200 |
Q |
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| T |
49008064 |
ttatcaaggatttcattaagtgcaatactaatccaaaagcaagcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtgtggatagtta |
49008163 |
T |
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| Q |
201 |
tagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagctt |
280 |
Q |
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| T |
49008164 |
tagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagctt |
49008243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 34962886 - 34962792
Alignment:
| Q |
157 |
aaaactgttttaggtacaaaaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacat |
251 |
Q |
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| T |
34962886 |
aaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctgacat |
34962792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 21687241 - 21687144
Alignment:
| Q |
182 |
caccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagct |
279 |
Q |
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| T |
21687241 |
cacctagtgtggatttttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacctgacatcactgctcctggtacatcaatcttagct |
21687144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 19375962 - 19375883
Alignment:
| Q |
175 |
aaaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcac |
254 |
Q |
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| T |
19375962 |
aaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccgacatcac |
19375883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 8962996 - 8963078
Alignment:
| Q |
175 |
aaaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagc |
257 |
Q |
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||||||| ||| || |||||| |||||| || |||||||||||| | |||||||||| ||| |||||||| ||||| ||||| |
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| T |
8962996 |
aaaccagtacctagggtggatttttatagttctagagggccatcaaagagttgtccatatgtgttgaaacctgacattacagc |
8963078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 8958005 - 8958061
Alignment:
| Q |
198 |
ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcac |
254 |
Q |
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|||||| ||||||||||| ||| |||||||||||| | | |||||||| |||||||| |
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| T |
8958005 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcac |
8958061 |
T |
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