View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_167 (Length: 282)
Name: NF9913A_low_167
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_167 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 30183242 - 30183499
Alignment:
| Q |
1 |
tcacaccttagttaaacagccaaatcacatgccaagttacttagaagttagaaccaccattcaacaaagaaattaggttacttcaaacgtgaatgatcct |
100 |
Q |
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| T |
30183242 |
tcacaccttagttaaacagccaaatcacatgccaagttacttagaagttagaaccaccattcaacaaagaaattaggttacttcaaacttgaatgatcct |
30183341 |
T |
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| Q |
101 |
cttgtccaagtaaaagtccgcgtgtgagaagtgggaatcaactacctgtattgcaaag----------------ttcgttaaaagtacatttatagtgaa |
184 |
Q |
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| T |
30183342 |
cttgtcctagtaaaagtccgcgtgt----------------------gtattgcaaagttcgttaaaagtacatttcgttaaaagtacatttatagtgaa |
30183419 |
T |
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| Q |
185 |
ctactgaacttgatgtcggtgattgcttatattttgcaacaacaaattctactctaagttaattgatttaaacctatgaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
30183420 |
ctactgaacttgatgtcggtgattgcttatattttgcaacaacaaattctacactaaattaattgatttaaacctatgaa |
30183499 |
T |
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