View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_168 (Length: 280)

Name: NF9913A_low_168
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_168
NF9913A_low_168
[»] chr7 (12 HSPs)
chr7 (1-262)||(31438416-31438677)
chr7 (1-95)||(33304735-33304829)
chr7 (1-89)||(31572416-31572504)
chr7 (6-92)||(31608833-31608919)
chr7 (6-97)||(31576573-31576664)
chr7 (6-92)||(31595630-31595716)
chr7 (6-95)||(31615107-31615196)
chr7 (6-95)||(31618843-31618932)
chr7 (6-95)||(31585983-31586074)
chr7 (1-95)||(31541587-31541681)
chr7 (1-85)||(31532930-31533014)
chr7 (6-77)||(31605239-31605310)
[»] chr4 (1 HSPs)
chr4 (1-238)||(15062793-15063024)
[»] chr1 (1 HSPs)
chr1 (1-77)||(52173895-52173971)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 31438677 - 31438416
Alignment:
Q  1 tcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactataccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  31438677 tcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcacttctgcataactataccgct 31438578  T
Q  101 tcggcaccgacaaattaaatcttttaatgaaatcctcaatatgatcttggtcgatagatattcttgttttcttgaagatccttgtttgtactaaacttag 200  Q
    | ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31438577 ttggcaccgacaaattatatctttttatgaaatcctcaatatgatcttggtcgatagatattcttgttttcttgaagatccttgtttgtactaaacttag 31438478  T
Q  201 atacccctcacgtttacaaacaatcatcacaataaatagtacagctcctacaccaaatgatg 262  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31438477 atacccctcacgtttacaaacaatcatcgcaataaatagtacagctcctacaccaaatgatg 31438416  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33304829 - 33304735
Alignment:
Q  1 tcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactata 95  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |  |||||  |||||||||| |||||    
T  33304829 tcaggtaagcttgctttgtacacaacaccatatcctccttgacctaatttatctcgaaatgagtttgtcattctttttacttctgcatatctata 33304735  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31572504 - 31572416
Alignment:
Q  1 tcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcata 89  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||| |  |||||| ||||||||||    
T  31572504 tcaggtaaacttgctttgtacacgacaccatatcctccttaacctaatttatctcgaaatgagtttgtcattcttttcacttctgcata 31572416  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 31608833 - 31608919
Alignment:
Q  6 taaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataact 92  Q
    ||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| ||||||  |||||| ||||||    
T  31608833 taaacttgctttgtacacaacaccatatcctccatggcctaatttatctcgaaatgagtttgtgatcctttttacttctgtataact 31608919  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 31576573 - 31576664
Alignment:
Q  6 taaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactatacc 97  Q
    ||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||||||||| ||||||  |||||| ||| |||||||    
T  31576573 taaacttgctttgtaaacaacaccatatcctccttggcctaatttatcccgaaatgagtttgtgatcctttttacttctgtatatctatacc 31576664  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 31595630 - 31595716
Alignment:
Q  6 taaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataact 92  Q
    ||||||||||||||||||||||||||||||||| || || || ||||| || ||||||||||||| ||||||  |||||||||||||    
T  31595630 taaacttgctttgtacacaacaccatatcctccgtggcctaatttatcacggaatgagtttgtgatcctttttacttctgcataact 31595716  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 31615107 - 31615196
Alignment:
Q  6 taaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactata 95  Q
    |||||||||||||||||||||||||||||||||||| || || |||||||| || |||||||| | ||||||  |||||| |||||||||    
T  31615107 taaacttgctttgtacacaacaccatatcctccttggcctaatttatctcggaaagagtttgttatcctttttacttctgtataactata 31615196  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 31618843 - 31618932
Alignment:
Q  6 taaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactata 95  Q
    ||||||||||||||| ||||||||||| |||||||| || ||||| ||||||||  ||||||||| | ||||| ||||||||||||||||    
T  31618843 taaacttgctttgtagacaacaccataccctccttggcctaacttttctcgaaaatagtttgtgatcattttcacttctgcataactata 31618932  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 31585983 - 31586074
Alignment:
Q  6 taaacttgctttgtacacaacaccatatcctccttgacccaactta--tctcgaaatgagtttgtgaaccttttcgcttctgcataactata 95  Q
    ||||| ||||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||| ||||||  ||||||  ||||||||    
T  31585983 taaacatgctttgtacacaacaccatatcctccttgacctaatttatctctcgaaatgagtttgtgatcctttttacttctgtgtaactata 31586074  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31541587 - 31541681
Alignment:
Q  1 tcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactata 95  Q
    ||||||||  |||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||| |   ||||| |||||||||| |||||    
T  31541587 tcaggtaagtttgctttgtaaacaacaccatatcctccttgacctaatttatctcgaaacgagtttgtcatttttttcacttctgcatatctata 31541681  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31532930 - 31533014
Alignment:
Q  1 tcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctg 85  Q
    ||||||||  |||||||||| || | |||||||||||||||||||||  | ||||||||||||||||| |  |||||| ||||||    
T  31532930 tcaggtaagtttgctttgtaaaccataccatatcctccttgacccaatctgtctcgaaatgagtttgtcattcttttcacttctg 31533014  T

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Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 31605239 - 31605310
Alignment:
Q  6 taaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaacctttt 77  Q
    ||||||||||||||| |||||||||||||||||||| || || ||| |||| || |||||||| | ||||||    
T  31605239 taaacttgctttgtaaacaacaccatatcctccttggcctaatttaactcggaaagagtttgttatcctttt 31605310  T

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Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15063024 - 15062793
Alignment:
Q  1 tcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactataccact 100  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||| ||| ||    
T  15063024 tcaggtaaactggctttgtaaacaacaccatatcctccttggcccaacttatctcgaaacgagtttgtgaaccttttcacatctgcataactaaaccgct 15062925  T
Q  101 tcggcaccgacaaattaaatcttttaatgaaatcctcaatatgatcttggtcgatagatattcttgttttcttgaagatccttgtttgtactaaacttag 200  Q
    | ||||| ||||||||| ||||||| ||||||||||||||   ||| ||||| |||  ||||||||| |||||||||||||| |||| || ||| |||||    
T  15062924 taggcactgacaaattatatctttttatgaaatcctcaat---atcgtggtcaataactattcttgtgttcttgaagatcctcgtttttaataagcttag 15062828  T
Q  201 atacccctcacgtttacaaacaatcatcacaataaata 238  Q
    ||| |||| ||||||||||||   ||||||||||||||    
T  15062827 atatcccttacgtttacaaac---catcacaataaata 15062793  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52173971 - 52173895
Alignment:
Q  1 tcaggtaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaacctttt 77  Q
    |||||||||||||||||||| |||||||||||||||||||| || || |||||||| || || ||||||| ||||||    
T  52173971 tcaggtaaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttt 52173895  T

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