View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_173 (Length: 278)
Name: NF9913A_low_173
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_173 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 37568412 - 37568326
Alignment:
| Q |
7 |
ctccatggcaaaggatagagagaatttcctctctagaatattatgttttactcgttagaaatgattaaaaaccatcatttgtattac |
93 |
Q |
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| T |
37568412 |
ctccatggcaaaggatagagagaagttcctctctagaatattatgttttactcgttagaaatgattaaaaaccatcatttgtattac |
37568326 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 37568172 - 37568116
Alignment:
| Q |
210 |
gtggagagagtttagtgtaactcacgacattaagaacaacacacctcactatatatt |
266 |
Q |
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| T |
37568172 |
gtggagagagtttagtgtaactcacgacattaagaacaacacacctcactatatatt |
37568116 |
T |
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