View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_176 (Length: 276)

Name: NF9913A_low_176
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_176
NF9913A_low_176
[»] chr8 (2 HSPs)
chr8 (10-270)||(43164617-43164877)
chr8 (10-270)||(41310939-41311199)
[»] chr7 (8 HSPs)
chr7 (11-188)||(30165798-30165975)
chr7 (201-270)||(28180965-28181034)
chr7 (64-125)||(30119904-30119965)
chr7 (207-266)||(30125090-30125149)
chr7 (83-133)||(30130917-30130967)
chr7 (213-270)||(30165728-30165785)
chr7 (210-270)||(30120047-30120107)
chr7 (211-270)||(30131048-30131107)
[»] chr2 (2 HSPs)
chr2 (213-270)||(21426649-21426706)
chr2 (83-133)||(21426789-21426839)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 43164617 - 43164877
Alignment:
Q  10 aatatcaccaccatttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattct 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43164617 aatatcaccaccatttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacagcgtattct 43164716  T
Q  110 tgcattacccatatcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactat 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43164717 tgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactat 43164816  T
Q  210 aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataat 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43164817 aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataat 43164877  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 41310939 - 41311199
Alignment:
Q  10 aatatcaccaccatttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattct 109  Q
    |||||| |||| |||||||||||||| ||||||||| || ||| | || | ||||||||||||||||||||| |||||||||||||| |  |||||||||    
T  41310939 aatatcgccacaatttgtaaagcataatggggaaaactccggatcggggtgaaaagaaaaatcaaaagtcttagtccaagatgaatgtattgcgtattct 41311038  T
Q  110 tgcattacccatatcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactat 209  Q
    ||||| ||||||||||||||||||| |||||||||||||||| | || ||||| | || || ||||| |||||||||||   | | |||  |||||||||    
T  41311039 tgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaatcactat 41311138  T
Q  210 aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataat 270  Q
    ||||| ||||||| |||||| ||||||||| |||| |||||||||||||| ||||||||||    
T  41311139 aaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataat 41311199  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 30165975 - 30165798
Alignment:
Q  11 atatcaccaccatttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattctt 110  Q
    |||||||| | |||||||||||||| ||| ||||||||  ||| ||||| |||||||||||||| |||| | ||||||||||||||||| ||||||||||    
T  30165975 atatcaccgcaatttgtaaagcatattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcgtagtccaagatgaatgcactgcgtattctt 30165876  T
Q  111 gcattacccatatcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaa 188  Q
    |||| ||||||||||||| ||||||| |||||| ||||||| | |||||||| ||  ||| |||||||||||||||||    
T  30165875 gcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaa 30165798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 28180965 - 28181034
Alignment:
Q  201 aatcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataat 270  Q
    |||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||||    
T  28180965 aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataat 28181034  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 30119904 - 30119965
Alignment:
Q  64 agaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattcttgcattacccatatct 125  Q
    ||||||| ||| ||||||  |||||||||||||||| || ||||||||||||||||||||||    
T  30119904 agaaaaaacaagagtcttaatccaagatgaatgcactgcatattcttgcattacccatatct 30119965  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 30125090 - 30125149
Alignment:
Q  207 tataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaa 266  Q
    |||||||||||| ||||||||| || ||||||||||||  ||||||||||||| ||||||    
T  30125090 tataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaa 30125149  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 30130917 - 30130967
Alignment:
Q  83 gtccaagatgaatgcacggcgtattcttgcattacccatatcttaagtgta 133  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||| ||||    
T  30130917 gtccaagatgaatgcactgtgtattcttgcatcacccatatcttaactgta 30130967  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 30165785 - 30165728
Alignment:
Q  213 aatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataat 270  Q
    |||||| ||||||||| ||||||| |||||||  ||||||||||||| ||||||||||    
T  30165785 aatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataat 30165728  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 30120047 - 30120107
Alignment:
Q  210 aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataat 270  Q
    ||||||| | ||| ||||| |||||||| |||||| |||||||||||||| ||||||||||    
T  30120047 aaaaatcctttggcagagctatctctgatattgtcgtttcctttaaatcaaaggcaataat 30120107  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 30131048 - 30131107
Alignment:
Q  211 aaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataat 270  Q
    |||||||| ||||||||  ||||||||||||||| |||||||||||| | |||| |||||    
T  30131048 aaaatcatttggaagagttatctctgacattgtcatttcctttaaattaaaggctataat 30131107  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 21426706 - 21426649
Alignment:
Q  213 aatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataat 270  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||  |||||||||    
T  21426706 aatcatctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataat 21426649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 21426839 - 21426789
Alignment:
Q  83 gtccaagatgaatgcacggcgtattcttgcattacccatatcttaagtgta 133  Q
    |||||||||||||| || |||||||||||||| | ||||||||||| ||||    
T  21426839 gtccaagatgaatggacagcgtattcttgcatcatccatatcttaattgta 21426789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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