View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_18 (Length: 465)

Name: NF9913A_low_18
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_18
NF9913A_low_18
[»] chr4 (31 HSPs)
chr4 (1-312)||(53755106-53755419)
chr4 (311-413)||(22199429-22199531)
chr4 (311-413)||(53123201-53123303)
chr4 (315-413)||(9089040-9089138)
chr4 (311-413)||(46442014-46442116)
chr4 (312-413)||(21802114-21802215)
chr4 (308-413)||(31078609-31078714)
chr4 (313-413)||(33530479-33530579)
chr4 (313-413)||(36073519-36073619)
chr4 (312-412)||(10442581-10442682)
chr4 (312-413)||(44893007-44893108)
chr4 (313-413)||(44893596-44893696)
chr4 (311-413)||(2625007-2625109)
chr4 (311-413)||(36073121-36073223)
chr4 (311-413)||(47290236-47290338)
chr4 (311-413)||(49387680-49387782)
chr4 (311-413)||(4751617-4751719)
chr4 (315-413)||(24128409-24128507)
chr4 (312-413)||(7744906-7745007)
chr4 (315-413)||(17655600-17655699)
chr4 (323-413)||(23964269-23964359)
chr4 (312-413)||(50156373-50156473)
chr4 (311-410)||(11314044-11314144)
chr4 (311-413)||(37219801-37219904)
chr4 (312-413)||(37934735-37934837)
chr4 (315-403)||(24392854-24392942)
chr4 (313-411)||(42671840-42671939)
chr4 (313-405)||(36073256-36073349)
chr4 (343-413)||(30563379-30563449)
chr4 (313-362)||(25063369-25063419)
chr4 (348-405)||(44744610-44744667)
[»] chr7 (19 HSPs)
chr7 (311-410)||(15577640-15577739)
chr7 (312-413)||(45637881-45637982)
chr7 (311-413)||(3962148-3962250)
chr7 (312-413)||(35445567-35445668)
chr7 (312-413)||(42611981-42612082)
chr7 (313-413)||(24395141-24395241)
chr7 (311-413)||(15329444-15329546)
chr7 (313-413)||(34483008-34483108)
chr7 (313-413)||(35876414-35876514)
chr7 (312-413)||(48880721-48880822)
chr7 (313-413)||(30848739-30848839)
chr7 (315-413)||(4974532-4974630)
chr7 (308-397)||(25167646-25167735)
chr7 (322-413)||(29737314-29737406)
chr7 (312-403)||(15238564-15238655)
chr7 (314-403)||(37476876-37476965)
chr7 (311-403)||(18037157-18037249)
chr7 (315-410)||(20009895-20009991)
chr7 (312-405)||(42696261-42696355)
[»] scaffold0096 (1 HSPs)
scaffold0096 (313-413)||(41180-41280)
[»] chr3 (29 HSPs)
chr3 (313-413)||(19650695-19650795)
chr3 (311-413)||(3456234-3456336)
chr3 (311-413)||(6042047-6042149)
chr3 (313-413)||(3089589-3089689)
chr3 (313-413)||(3574321-3574421)
chr3 (311-413)||(3137207-3137309)
chr3 (311-413)||(22426138-22426240)
chr3 (311-413)||(33113964-33114066)
chr3 (311-413)||(34482681-34482783)
chr3 (311-413)||(37216846-37216948)
chr3 (313-413)||(30385570-30385670)
chr3 (314-413)||(8320378-8320477)
chr3 (311-413)||(48161076-48161178)
chr3 (313-413)||(47738281-47738382)
chr3 (313-413)||(2754889-2754989)
chr3 (313-413)||(37522223-37522323)
chr3 (315-413)||(33145882-33145980)
chr3 (304-403)||(8361825-8361924)
chr3 (311-405)||(36864825-36864920)
chr3 (313-403)||(9796824-9796914)
chr3 (311-403)||(40328011-40328104)
chr3 (315-413)||(42921295-42921394)
chr3 (313-413)||(26612916-26613017)
chr3 (325-413)||(33839705-33839794)
chr3 (312-403)||(41224414-41224505)
chr3 (313-412)||(24343720-24343820)
chr3 (314-413)||(46919064-46919164)
chr3 (354-413)||(42298032-42298091)
chr3 (344-402)||(41883048-41883106)
[»] chr1 (24 HSPs)
chr1 (313-413)||(3559787-3559887)
chr1 (311-413)||(44094867-44094969)
chr1 (313-413)||(25463846-25463946)
chr1 (311-413)||(20304923-20305025)
chr1 (311-413)||(51737675-51737777)
chr1 (313-413)||(37821629-37821729)
chr1 (314-413)||(40215158-40215257)
chr1 (311-413)||(18404618-18404720)
chr1 (311-413)||(36966501-36966603)
chr1 (311-413)||(41876235-41876337)
chr1 (312-413)||(19015574-19015675)
chr1 (313-413)||(25973577-25973677)
chr1 (313-413)||(6883657-6883757)
chr1 (313-413)||(9910086-9910186)
chr1 (311-403)||(33786424-33786516)
chr1 (313-403)||(32000061-32000151)
chr1 (315-403)||(40273888-40273976)
chr1 (313-389)||(19722894-19722970)
chr1 (315-410)||(44690818-44690914)
chr1 (311-413)||(10167569-10167672)
chr1 (316-378)||(33786634-33786696)
chr1 (311-405)||(27523048-27523143)
chr1 (317-389)||(40273706-40273779)
chr1 (314-362)||(52064373-52064422)
[»] scaffold0228 (3 HSPs)
scaffold0228 (311-413)||(16154-16256)
scaffold0228 (311-413)||(26106-26208)
scaffold0228 (380-413)||(8572-8605)
[»] chr8 (31 HSPs)
chr8 (311-413)||(1645757-1645859)
chr8 (315-413)||(24211169-24211267)
chr8 (312-413)||(15187730-15187831)
chr8 (312-413)||(26041907-26042008)
chr8 (312-413)||(37985850-37985951)
chr8 (312-413)||(40779923-40780024)
chr8 (313-413)||(3596836-3596936)
chr8 (313-413)||(6108028-6108128)
chr8 (313-413)||(10044518-10044618)
chr8 (313-413)||(17841645-17841745)
chr8 (314-413)||(14129029-14129128)
chr8 (312-413)||(32064916-32065017)
chr8 (313-413)||(25581034-25581134)
chr8 (313-413)||(30055686-30055786)
chr8 (312-407)||(1503637-1503732)
chr8 (315-413)||(20091598-20091696)
chr8 (315-413)||(34665551-34665649)
chr8 (313-413)||(42754837-42754937)
chr8 (311-401)||(31347569-31347659)
chr8 (315-412)||(38017103-38017201)
chr8 (324-413)||(39772608-39772697)
chr8 (315-412)||(37132477-37132575)
chr8 (311-403)||(7022159-7022251)
chr8 (311-403)||(7017651-7017743)
chr8 (325-413)||(32394027-32394114)
chr8 (325-413)||(35353211-35353299)
chr8 (354-413)||(8454003-8454062)
chr8 (316-405)||(3890412-3890502)
chr8 (343-405)||(41819593-41819655)
chr8 (358-410)||(27835293-27835345)
chr8 (312-393)||(30834849-30834931)
[»] chr2 (18 HSPs)
chr2 (311-413)||(13355018-13355120)
chr2 (317-413)||(3989246-3989342)
chr2 (313-413)||(7475303-7475403)
chr2 (313-413)||(9293370-9293470)
chr2 (313-413)||(10662058-10662158)
chr2 (313-413)||(33380377-33380477)
chr2 (313-413)||(35160929-35161029)
chr2 (313-413)||(23267857-23267957)
chr2 (316-413)||(31174633-31174730)
chr2 (312-403)||(43331092-43331183)
chr2 (311-413)||(22592880-22592985)
chr2 (343-413)||(21936252-21936322)
chr2 (315-403)||(21393483-21393570)
chr2 (343-413)||(16767287-16767357)
chr2 (313-403)||(9723586-9723677)
chr2 (354-413)||(14941200-14941259)
chr2 (354-403)||(34320993-34321042)
chr2 (334-403)||(37335824-37335894)
[»] chr5 (17 HSPs)
chr5 (312-413)||(14138837-14138938)
chr5 (313-413)||(8145543-8145643)
chr5 (312-413)||(4892372-4892473)
chr5 (312-413)||(37321587-37321688)
chr5 (313-413)||(33584124-33584224)
chr5 (311-413)||(25398408-25398510)
chr5 (312-413)||(3521801-3521902)
chr5 (313-413)||(2477806-2477906)
chr5 (313-413)||(6043307-6043407)
chr5 (316-413)||(12850972-12851069)
chr5 (314-413)||(3362949-3363048)
chr5 (312-413)||(12614531-12614633)
chr5 (313-403)||(22912852-22912942)
chr5 (313-413)||(38899520-38899621)
chr5 (334-413)||(11360947-11361026)
chr5 (312-403)||(17545476-17545567)
chr5 (355-413)||(4433845-4433903)
[»] scaffold0085 (1 HSPs)
scaffold0085 (313-413)||(48019-48119)
[»] chr6 (17 HSPs)
chr6 (313-413)||(18365369-18365469)
chr6 (313-413)||(18370633-18370733)
chr6 (313-413)||(33695121-33695221)
chr6 (311-413)||(23290874-23290976)
chr6 (311-413)||(33696867-33696969)
chr6 (313-413)||(17175816-17175916)
chr6 (311-413)||(28675318-28675420)
chr6 (311-413)||(32702375-32702477)
chr6 (311-413)||(17705262-17705363)
chr6 (313-413)||(2309218-2309318)
chr6 (315-410)||(6031537-6031632)
chr6 (315-403)||(11548386-11548474)
chr6 (343-413)||(18889469-18889539)
chr6 (311-413)||(29693615-29693718)
chr6 (352-413)||(6127447-6127508)
chr6 (314-378)||(34238883-34238947)
chr6 (381-413)||(9752109-9752141)
[»] scaffold0204 (1 HSPs)
scaffold0204 (313-413)||(4566-4666)
[»] scaffold0178 (1 HSPs)
scaffold0178 (313-413)||(11791-11891)
[»] scaffold0471 (1 HSPs)
scaffold0471 (315-413)||(13012-13110)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 53755419 - 53755106
Alignment:
Q  1 tcacataaatctttcacttatttgtaacaatgtaaatgagcaattta--gagctagttcaaaacctatgttcagacctcatatttctaaatcaagaacat 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  53755419 tcacataaatctttcacttatttgtaacaatgtaaatgagcaatttatagagctaattcaaaacctatgctcagacctcatatttctaaatcaagaacat 53755320  T
Q  99 ctcaagtacctatcttacgcatgaatcgtttgagctatttgccatgaaagtcttgaagatgaccgccacaactcgcatgatttccattttctcttaagaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  53755319 ctcaagtacctatcttacgcatgaatcgtttgagctatttgccatgaaagtcttgaagacgaccgccacaactcacatgatttccattttctcttaagaa 53755220  T
Q  199 catttatgaccaataaagatgatttcaatgtgtcaaggggccaatttgaagatgattacaagttcaaatttgttaccataaaaactatataaccccacgg 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  53755219 catttatgatcaataaagatgatttcaatgtgtcaaggggccaatttgaagatgattacaagttcaaatttgttaccataaaaactatttaaacccacgg 53755120  T
Q  299 tgtgtataaatcaa 312  Q
    ||||||||||||||    
T  53755119 tgtgtataaatcaa 53755106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 22199531 - 22199429
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  22199531 aaggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 22199432  T
Q  411 cat 413  Q
    |||    
T  22199431 cat 22199429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 53123303 - 53123201
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  53123303 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcatctttagatttcagtctcatttattaatcttt 53123204  T
Q  411 cat 413  Q
    |||    
T  53123203 cat 53123201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 9089138 - 9089040
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9089138 aaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcatctttagatttcagtctcatttattaatctttcat 9089040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 46442116 - 46442014
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  46442116 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 46442017  T
Q  411 cat 413  Q
    |||    
T  46442016 cat 46442014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 21802114 - 21802215
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  21802114 aggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttattaatctttc 21802213  T
Q  412 at 413  Q
    ||    
T  21802214 at 21802215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 308 - 413
Target Start/End: Original strand, 31078609 - 31078714
Alignment:
Q  308 atcaaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatc 407  Q
    ||||||||||||||||||||| ||||||||||||| || ||| || ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  31078609 atcaaggaaaatgctagatatcaagaatgattttataaaaaaaattcaagaatgacatggcacaataatcatctttagatttcaatctcatttattaatc 31078708  T
Q  408 tttcat 413  Q
    ||||||    
T  31078709 tttcat 31078714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 33530479 - 33530579
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||    
T  33530479 ggaaaatgctagatatcaagaatgattttataaaaaagatccaagaatgacatggcacaataatcacctttagatttcagtcttatttattaatctttca 33530578  T
Q  413 t 413  Q
    |    
T  33530579 t 33530579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 36073619 - 36073519
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  36073619 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 36073520  T
Q  413 t 413  Q
    |    
T  36073519 t 36073519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 312 - 412
Target Start/End: Original strand, 10442581 - 10442682
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcattta-ttaatcttt 410  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  10442581 aggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatttaatcttt 10442680  T
Q  411 ca 412  Q
    ||    
T  10442681 ca 10442682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 44893007 - 44893108
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  44893007 aggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttc 44893106  T
Q  412 at 413  Q
    ||    
T  44893107 at 44893108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 44893696 - 44893596
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  44893696 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 44893597  T
Q  413 t 413  Q
    |    
T  44893596 t 44893596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 2625109 - 2625007
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||| ||||||| ||||||||||||| ||||||||| ||| ||||| ||  ||||||||||| |||||||||||||||||||||||||||||||    
T  2625109 aaggaaaatgttagatatcaagaatgattttataagaaagattcaaaaatgacatagcacaataatcacctttagatttcagtctcatttattaatcttt 2625010  T
Q  411 cat 413  Q
    |||    
T  2625009 cat 2625007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 36073223 - 36073121
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| || |||||||||| |||||| || ||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||    
T  36073223 aaggaaaatgctagatatcaaaaatgattttataagaaaaattcaagaatgacatggcacaataaccacctttagatttcagtctcatttattaatcttt 36073124  T
Q  411 cat 413  Q
    |||    
T  36073123 cat 36073121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 47290338 - 47290236
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| |||  |||||||||| ||||||||||||||||||||||||| |||||    
T  47290338 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggtacaataatcacctttagatttcagtctcatttattattcttt 47290239  T
Q  411 cat 413  Q
    |||    
T  47290238 cat 47290236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 49387680 - 49387782
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||| ||||||| ||| ||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  49387680 aaggaaaatgttagatatcaaggatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 49387779  T
Q  411 cat 413  Q
    |||    
T  49387780 cat 49387782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 4751719 - 4751617
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| |||||| |||||| |||||| ||  |||||||| ||| |||||||| || |||||||||||||||||||||||||||||||    
T  4751719 aaggaaaatgctagatatcaagaataattttataagaaaaatttaagaatgacatggcacaataaccacctttagatttcagtctcatttattaatcttt 4751620  T
Q  411 cat 413  Q
    |||    
T  4751619 cat 4751617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 24128507 - 24128409
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||||    
T  24128507 aaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatgacacaataattacctttagatttcagtctcatttattaatctttcat 24128409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 7744906 - 7745007
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||| ||||||| ||||||||||||| ||||||||| ||||||||| ||  ||||||||||| |||||||||||| |||||||||||||| ||||    
T  7744906 aggaaaatgttagatatcaagaatgattttataagaaagattcaagaatgacattgcacaataatcacctttagatttcaatctcatttattaatatttc 7745005  T
Q  412 at 413  Q
    ||    
T  7745006 at 7745007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 17655699 - 17655600
Alignment:
Q  315 aaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||| ||| || |||||| | |||||||||||||||||||||||||| |||||||    
T  17655699 aaaatgctagatattaagaatgattttatcaagaaagatttaagaatgacatgacataataattacctttagatttcagtctcatttattaacctttcat 17655600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 23964269 - 23964359
Alignment:
Q  323 agatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||| ||||||||||||| |||||||||  |||||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||    
T  23964269 agatatcaagaatgattttataagaaagatttaagaatgacatggcataataatcatctttagatttcaatctcatttattaatctttcat 23964359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 50156373 - 50156473
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||| ||||||| ||||||||||||| |||||| || ||||||||| ||| || |||||||| | ||||||||||||||||||||||||||||||    
T  50156373 aggaaaatgttagatatcaagaatgattttataagaaaaattcaagaatgacatgacataataatca-ccttagatttcagtctcatttattaatctttc 50156471  T
Q  412 at 413  Q
    ||    
T  50156472 at 50156473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 410
Target Start/End: Original strand, 11314044 - 11314144
Alignment:
Q  311 aaggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctt 409  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||||||||| | |||||||  ||||| ||||||||| |||    
T  11314044 aaggaaaatgctagatatcaagaatgattttatcaagaaagatgcaagaatgacatgacacaataatcacccttagattatagtcttatttattaacctt 11314143  T
Q  410 t 410  Q
    |    
T  11314144 t 11314144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 37219904 - 37219801
Alignment:
Q  311 aaggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctt 409  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||  |||||||| ||| || |||||||||| |||||||||| ||| ||||||||| |||    
T  37219904 aaggaaaatgttagatatcaagaatgattttatcaagaaagatttaagaatgacatggcagaataatcatccttagatttcaatcttatttattaacctt 37219805  T
Q  410 tcat 413  Q
    ||||    
T  37219804 tcat 37219801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 37934735 - 37934837
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttac-aagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    ||||||||| ||||||||| || ||||||||  ||||||||| ||| ||||||||| ||||||||||| | |||||||||| ||||||||||||| ||||    
T  37934735 aggaaaatgttagatattatgactgattttattaagaaagattcaataatgatatgacacaataatcacccttagatttcaatctcatttattaaccttt 37934834  T
Q  411 cat 413  Q
    |||    
T  37934835 cat 37934837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 24392942 - 24392854
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||| |||||||||||  ||||||| ||  |||||||| ||  ||||||||||||| ||||||||||||||||||||||    
T  24392942 aaaatgctagatatcaagaatgatttatcaagaaatatttaagaatgacatagcacaataatcatccttagatttcagtctcatttatt 24392854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 411
Target Start/End: Complemental strand, 42671939 - 42671840
Alignment:
Q  313 ggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    |||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||| || |||||||||  |||||||| |||||||||| |||| |||||    
T  42671939 ggaaaatgttagatatcaagaatgattttatcaagaaagattcaagaatgacatgacataataatcattcttagatttgagtctcatttgttaacctttc 42671840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 36073256 - 36073349
Alignment:
Q  313 ggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaa 405  Q
    ||||||||||||||| ||| |||||||||| ||||||||||  |||||||||||| || |||||| |   |||||||||||||| |||||||||    
T  36073256 ggaaaatgctagatactaaaaatgattttatcaagaaagatttaagaatgatatgccagaataattactcttagatttcagtcttatttattaa 36073349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 30563449 - 30563379
Alignment:
Q  343 caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||| ||||||||| ||| |||||||||||   |||||||||||||| ||||||||| |||||||    
T  30563449 caagaaagattcaagaatgacatgacacaataatcacacttagatttcagtcttatttattaacctttcat 30563379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 25063369 - 25063419
Alignment:
Q  313 ggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatga 362  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  25063369 ggaaaatgctagatatcaagaatgattttatcaagaaagattcaagaatga 25063419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 44744667 - 44744610
Alignment:
Q  348 aagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaa 405  Q
    ||||| ||||||||| ||| | ||||||| ||| |||||||||||||| |||||||||    
T  44744667 aagattcaagaatgacatgactcaataattatccttagatttcagtcttatttattaa 44744610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 311 - 410
Target Start/End: Original strand, 15577640 - 15577739
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  15577640 aaggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatgtcacaataatcacctttagatttcagtctcatttattaatcttt 15577739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 45637982 - 45637881
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  45637982 aggaaaatgctagatattaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttc 45637883  T
Q  412 at 413  Q
    ||    
T  45637882 at 45637881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 3962250 - 3962148
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  3962250 aaggaaaatgctagatatcaagaatgattttataagaaatatccaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 3962151  T
Q  411 cat 413  Q
    |||    
T  3962150 cat 3962148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 35445668 - 35445567
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  35445668 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgatatgacacaataatcacctttagatttcagtctcatttattaatctttc 35445569  T
Q  412 at 413  Q
    ||    
T  35445568 at 35445567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 42612082 - 42611981
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  42612082 aggaaaatgctagatatcaagaatgattttataagaaagatctaagaatgacatggcacaataatcacctttagatttcagtcttatttattaatctttc 42611983  T
Q  412 at 413  Q
    ||    
T  42611982 at 42611981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 24395241 - 24395141
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| || |||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  24395241 ggaaaatgctagatatcaagaatgattttataaaaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 24395142  T
Q  413 t 413  Q
    |    
T  24395141 t 24395141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 15329546 - 15329444
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||    
T  15329546 aaggaaaatgctagatataaagaatgattttataagaaatattcaagaatgacatggcacaataatcacttttagatttcagtctcatttattaatcttt 15329447  T
Q  411 cat 413  Q
    |||    
T  15329446 cat 15329444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 34483108 - 34483008
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||| ||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  34483108 ggaaaatgttagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcaatctcatttattaatctttca 34483009  T
Q  413 t 413  Q
    |    
T  34483008 t 34483008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 35876514 - 35876414
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||| || ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  35876514 ggaaaatgctagatatcaagaatgattttataagaaatatctaaaaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 35876415  T
Q  413 t 413  Q
    |    
T  35876414 t 35876414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 48880721 - 48880822
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| |||||||||||  ||||||||||||| |||||||||||||||||    
T  48880721 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacatttagatttcagtttcatttattaatctttc 48880820  T
Q  412 at 413  Q
    ||    
T  48880821 at 48880822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 30848839 - 30848739
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||| ||||| |||||| || ||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  30848839 ggaaaatgctagatatcaagaatgcttttataagaaaaattcaagaatgacatggcacaataatcacctttaaatttcagtctcatttattaatctttca 30848740  T
Q  413 t 413  Q
    |    
T  30848739 t 30848739  T

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Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 4974532 - 4974630
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||| ||||||||||||| || |||||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||| |||||||    
T  4974532 aaaatgctagatatcaagaatgattttataaaaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttattaacctttcat 4974630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 397
Target Start/End: Original strand, 25167646 - 25167735
Alignment:
Q  308 atcaaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctca 397  Q
    |||| |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||    
T  25167646 atcagggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctca 25167735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 29737406 - 29737314
Alignment:
Q  322 tagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||| ||||||||||||| ||||||||||  |||||| | ||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  29737406 tagatatcaagaatgattttatcaagaaagatttaagaataacatgtcacaataatcacccttagatttcagtctcatttattaacctttcat 29737314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 15238655 - 15238564
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    ||||||||||||||||| |||||||||||  ||| ||| ||  |||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  15238655 aggaaaatgctagatatcaagaatgatttatcaaaaaatatttaagaatgacatgacacaataatcatccttagatttcagtctcatttatt 15238564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 37476876 - 37476965
Alignment:
Q  314 gaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    ||||||||||||||| |||||||||||  ||||||||||  || ||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  37476876 gaaaatgctagatatcaagaatgatttatcaagaaagatttaataatgacatggcacaataatcacccttagatttcagtctcatttatt 37476965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 18037249 - 18037157
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||||||| || ||||||||  ||||||||||  |||||||| |||  |||||||||| | ||||||||||||| ||||||||    
T  18037249 aaggaaaatgctagatatcaacaatgatttatcaagaaagatttaagaatgacatggtacaataatcacccttagatttcagtcacatttatt 18037157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 20009895 - 20009991
Alignment:
Q  315 aaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||| ||||||| | ||||||||||| ||| |||||| ||||||||| ||| ||||||||||||  |||||||| ||||||||||||||| ||||    
T  20009895 aaaatgatagatatcatgaatgattttatcaaaaaagattcaagaatgacatgacacaataatcatacttagattttagtctcatttattaaccttt 20009991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 42696355 - 42696261
Alignment:
Q  312 aggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaa 405  Q
    ||||||||| ||||||| || |||||||||| ||| ||| || ||||||||| |||  |||||||||| | ||||||||||||||||||||||||    
T  42696355 aggaaaatgttagatatcaataatgattttatcaaaaaaaattcaagaatgacatggtacaataatcacccttagatttcagtctcatttattaa 42696261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 41280 - 41180
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||    
T  41280 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgatatggtacaataatcacctttagatttcagtctcatttattaatctttca 41181  T
Q  413 t 413  Q
    |    
T  41180 t 41180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 19650695 - 19650795
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  19650695 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatgacacaataatcacctttagatttcagtctcatttattaatctttca 19650794  T
Q  413 t 413  Q
    |    
T  19650795 t 19650795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 3456336 - 3456234
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  3456336 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacactaatcatctttagatttcagtctcatttattaatcttt 3456237  T
Q  411 cat 413  Q
    |||    
T  3456236 cat 3456234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 6042149 - 6042047
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||    
T  6042149 aaggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacctttagatttcagtctcatttattaattttt 6042050  T
Q  411 cat 413  Q
    |||    
T  6042049 cat 6042047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 3089689 - 3089589
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  3089689 ggaaaatgctagatatcaagaatgattttataagaaagatctaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 3089590  T
Q  413 t 413  Q
    |    
T  3089589 t 3089589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 3574321 - 3574421
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  3574321 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatgacacaataatcacctctagatttcagtctcatttattaatctttca 3574420  T
Q  413 t 413  Q
    |    
T  3574421 t 3574421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 3137207 - 3137309
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  3137207 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 3137306  T
Q  411 cat 413  Q
    |||    
T  3137307 cat 3137309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 22426138 - 22426240
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||    
T  22426138 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacatttagatttcagtctcatttattaatcttt 22426237  T
Q  411 cat 413  Q
    |||    
T  22426238 cat 22426240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 33114066 - 33113964
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  33114066 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcaatctcatttattaatcttt 33113967  T
Q  411 cat 413  Q
    |||    
T  33113966 cat 33113964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 34482681 - 34482783
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  34482681 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 34482780  T
Q  411 cat 413  Q
    |||    
T  34482781 cat 34482783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 37216846 - 37216948
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||    
T  37216846 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggtacaataatcacctttagatttcagtctcatttattaatcttt 37216945  T
Q  411 cat 413  Q
    |||    
T  37216946 cat 37216948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 30385670 - 30385570
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    ||||||||||| |||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  30385670 ggaaaatgctaaatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 30385571  T
Q  413 t 413  Q
    |    
T  30385570 t 30385570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 314 - 413
Target Start/End: Original strand, 8320378 - 8320477
Alignment:
Q  314 gaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||||||| || |||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  8320378 gaaaatgctagatatcaataatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttcat 8320477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 48161178 - 48161076
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||||||| || ||| ||||||||||| ||||||||||||||||||||||||||| |||    
T  48161178 aaggaaaatgctagatatcaagaatgattttataagaaatatccaagaacgacatgacacaataatcacctttagatttcagtctcatttattaattttt 48161079  T
Q  411 cat 413  Q
    |||    
T  48161078 cat 48161076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 47738382 - 47738281
Alignment:
Q  313 ggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    |||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||    
T  47738382 ggaaaatgttagatatcaagaatgattttatcaagaaagattcaagaatgacatggcacaataatcatccttagatttcagtctcatttattaacctttc 47738283  T
Q  412 at 413  Q
    ||    
T  47738282 at 47738281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 2754989 - 2754889
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| |||||| |||||| |||||||||  |||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  2754989 ggaaaatgctagatatcaagaatcattttataagaaagatttaagaatgacatggcacaataatcacctttaaatttcagtctcatttattaatctttca 2754890  T
Q  413 t 413  Q
    |    
T  2754889 t 2754889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 37522323 - 37522223
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||    
T  37522323 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcataataatcacctttagatttcagtctcatttattaatctttca 37522224  T
Q  413 t 413  Q
    |    
T  37522223 t 37522223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 33145980 - 33145882
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | |||||||||||||| ||||||||| |||||||    
T  33145980 aaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagatttcagtcttatttattaacctttcat 33145882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 8361825 - 8361924
Alignment:
Q  304 ataaatcaaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||| |||||||||||||||||| |||||||||||  ||||||| || ||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  8361825 ataaattaaggaaaatgctagatatcaagaatgatttatcaagaaatattcaagaatgacatgacacaataatcacccttagatttcagtctcatttatt 8361924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 405
Target Start/End: Original strand, 36864825 - 36864920
Alignment:
Q  311 aaggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaa 405  Q
    |||||||||||||||||| ||||||||||||| ||| |||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||||    
T  36864825 aaggaaaatgctagatatcaagaatgattttatcaaaaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttattaa 36864920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 9796824 - 9796914
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||||| |||||||||||  |||||||||| ||||||||| |||||||||||||||   ||||||||||||||||||||||    
T  9796824 ggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatgtcacaataatcactcttagatttcagtctcatttatt 9796914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 40328104 - 40328011
Alignment:
Q  311 aaggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||||||||| | |||||||||||||| |||||||    
T  40328104 aaggaaaatgctagatatcaagaatgattttatcaagaaagattcaagaatgacatgacacaataatcacccttagatttcagtcttatttatt 40328011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 42921394 - 42921295
Alignment:
Q  315 aaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||||||||||||||||| ||||||| ||  |||||||| ||| ||||| ||||| | ||| |||||||||||||||||||| |||||||    
T  42921394 aaaatgctagatattaagaatgattttatcaagaaatatttaagaatgacatggcacaacaatcacccttaaatttcagtctcatttattaacctttcat 42921295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 26613017 - 26612916
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttac-aagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    |||||||| ||||||| || ||||||||||  ||||||||| ||||||| | ||| ||||||||||| | |||||||||||||||||||||||| |||||    
T  26613017 ggaaaatgttagatatcaataatgattttattaagaaagattcaagaataacatggcacaataatcacccttagatttcagtctcatttattaacctttc 26612918  T
Q  412 at 413  Q
    ||    
T  26612917 at 26612916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 33839794 - 33839705
Alignment:
Q  325 atattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||| ||||||||||||| |||||||||| ||||||||| ||| ||||||||||| | ||| |||||||||||||||||||| |||||||    
T  33839794 atatcaagaatgattttatcaagaaagattcaagaatgacatgacacaataatcacccttaaatttcagtctcatttattaacctttcat 33839705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 41224505 - 41224414
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    ||||||||||||||||| |||||||||||  ||||||| || ||||||||| ||| ||||||||||| | ||| |||||| |||||||||||    
T  41224505 aggaaaatgctagatatcaagaatgatttatcaagaaatattcaagaatgacatggcacaataatcacccttaaatttcaatctcatttatt 41224414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 412
Target Start/End: Complemental strand, 24343820 - 24343720
Alignment:
Q  313 ggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    |||||||| ||||||| ||||||||||||| ||| |||||| ||||||||| |||  |  ||||||| | |||||||||||||| ||||||||| |||||    
T  24343820 ggaaaatgttagatatcaagaatgattttatcaaaaaagattcaagaatgacatgatatgataatcacccttagatttcagtcttatttattaacctttc 24343721  T
Q  412 a 412  Q
    |    
T  24343720 a 24343720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 46919164 - 46919064
Alignment:
Q  314 gaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    ||||||| ||||||| ||||||||||||| ||| |||||| ||| ||||| ||| || |||||||| || |||||||| |||| |||||||||||| |||    
T  46919164 gaaaatgttagatatcaagaatgattttatcaaaaaagattcaataatgacatggcagaataatcacctctagatttcggtcttatttattaatctatca 46919065  T
Q  413 t 413  Q
    |    
T  46919064 t 46919064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 42298091 - 42298032
Alignment:
Q  354 caagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||| ||| |||||||| || | |||||||||||||||||||||||| |||||||    
T  42298091 caagaatgacatgacacaataaccacccttagatttcagtctcatttattaacctttcat 42298032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 41883048 - 41883106
Alignment:
Q  344 aagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttat 402  Q
    ||||||||| ||||||||| |||  | ||||||||||||| ||||||||||| ||||||    
T  41883048 aagaaagattcaagaatgacatggtaaaataatcatctttggatttcagtcttatttat 41883106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 3559887 - 3559787
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  3559887 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgatatgacacaataatcacctttatatttcagtctcatttattaatctttca 3559788  T
Q  413 t 413  Q
    |    
T  3559787 t 3559787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 44094969 - 44094867
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  44094969 aaggaaaatgctagatatcaagaattattttataagaaagatccaagaatgacatgacacaataatcacctttagatttcagtctcatttattaatcttt 44094870  T
Q  411 cat 413  Q
    |||    
T  44094869 cat 44094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 25463946 - 25463846
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  25463946 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacctttagatttaagtctcatttattaatctttca 25463847  T
Q  413 t 413  Q
    |    
T  25463846 t 25463846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 20304923 - 20305025
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  20304923 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatcaatcttt 20305022  T
Q  411 cat 413  Q
    |||    
T  20305023 cat 20305025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 51737777 - 51737675
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  51737777 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 51737678  T
Q  411 cat 413  Q
    |||    
T  51737677 cat 51737675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 37821629 - 37821729
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  37821629 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataatcacctttagatttcagtctcatttattaatctttca 37821728  T
Q  413 t 413  Q
    |    
T  37821729 t 37821729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 40215257 - 40215158
Alignment:
Q  314 gaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  40215257 gaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatatttcat 40215158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 18404720 - 18404618
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||||||  |||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||    
T  18404720 aaggaaaatgctagatatcaagaatgattttataagaaagatttaagaatgacatggcacaataatcacatttagatttcagtctcatttattaatcttt 18404621  T
Q  411 cat 413  Q
    |||    
T  18404620 cat 18404618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 36966501 - 36966603
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  36966501 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaataacatggcacaataatcacctttagatttcagtctcatttattaatcttt 36966600  T
Q  411 cat 413  Q
    |||    
T  36966601 cat 36966603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 41876235 - 41876337
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||    
T  41876235 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatagcacaataatcacctttagatttcagtctcatttattaatcttt 41876334  T
Q  411 cat 413  Q
    |||    
T  41876335 cat 41876337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 19015675 - 19015574
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    |||||||||||| |||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  19015675 aggaaaatgctacatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttc 19015576  T
Q  412 at 413  Q
    ||    
T  19015575 at 19015574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 25973677 - 25973577
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  25973677 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataatcacctttaaatttcagtctcatttattaatctttca 25973578  T
Q  413 t 413  Q
    |    
T  25973577 t 25973577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 6883757 - 6883657
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| || |||| ||| |||||||||||||||||||||||||||||||||    
T  6883757 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcataatattcacctttagatttcagtctcatttattaatctttca 6883658  T
Q  413 t 413  Q
    |    
T  6883657 t 6883657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 9910086 - 9910186
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||| ||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||| || ||||||||||||||||    
T  9910086 ggaaaatgttagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagacttatttattaatctttca 9910185  T
Q  413 t 413  Q
    |    
T  9910186 t 9910186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 33786424 - 33786516
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||||||| |||||||||||  |||||||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  33786424 aaggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatt 33786516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 32000061 - 32000151
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||||| |||||||||||  |||||||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  32000061 ggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatt 32000151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 40273976 - 40273888
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||| |||||||||||  ||||||| || ||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  40273976 aaaatgctagatatcaagaatgatttatcaagaaatattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatt 40273888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 19722894 - 19722970
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagattt 389  Q
    |||||||| ||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||    
T  19722894 ggaaaatgttagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacctttagattt 19722970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 44690818 - 44690914
Alignment:
Q  315 aaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||| ||||||| || |||||||||| |||||||||| ||||||||| ||| || |||||||| | ||||||| |||||| ||||||||||||||    
T  44690818 aaaatgttagatatcaataatgattttatcaagaaagattcaagaatgacatggcagaataatcacccttagattccagtcttatttattaatcttt 44690914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 10167672 - 10167569
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaag-atccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctt 409  Q
    |||||||||| || |||||||||||||||||| || |||  ||  |||||| |||||  |||||||||| |||||||||||||||| |||||||||| ||    
T  10167672 aaggaaaatgttacatattaagaatgattttataaaaaaatatttaagaataatatgatacaataatcacctttagatttcagtcttatttattaatttt 10167573  T
Q  410 tcat 413  Q
    ||||    
T  10167572 tcat 10167569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 33786696 - 33786634
Alignment:
Q  316 aaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatca 378  Q
    ||||||||||||| |||||||||||  |||||||||| ||||||||| ||| |||||||||||    
T  33786696 aaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatca 33786634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 405
Target Start/End: Original strand, 27523048 - 27523143
Alignment:
Q  311 aaggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaa 405  Q
    |||||||||| || |||| ||||||||||||| |||||||||| |||||||  |||| || | |||||| | || ||||| ||||| |||||||||    
T  27523048 aaggaaaatgttatatatcaagaatgattttatcaagaaagattcaagaatcgtatggcagattaatcaccctttgattttagtcttatttattaa 27523143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 40273706 - 40273779
Alignment:
Q  317 aatgctagatattaagaatga-ttttacaagaaagatccaagaatgatatgtcacaataatcatctttagattt 389  Q
    |||||||||||| ||||| || |||| ||||||| || ||||||||| |||||| |||||||| | ||||||||    
T  40273706 aatgctagatatcaagaaagattttttcaagaaaaattcaagaatgacatgtcaaaataatcacccttagattt 40273779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 52064373 - 52064422
Alignment:
Q  314 gaaaatgctagatattaagaatgatttta-caagaaagatccaagaatga 362  Q
    ||||||||||||||| || |||||||||| |||||||||| |||||||||    
T  52064373 gaaaatgctagatatcaaaaatgattttatcaagaaagattcaagaatga 52064422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 16256 - 16154
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  16256 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcatctttagatttcagtctcatttattaatcttt 16157  T
Q  411 cat 413  Q
    |||    
T  16156 cat 16154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 26208 - 26106
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  26208 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 26109  T
Q  411 cat 413  Q
    |||    
T  26108 cat 26106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 413
Target Start/End: Complemental strand, 8605 - 8572
Alignment:
Q  380 ctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||||||||||||||||||||||||||    
T  8605 ctttagatttcagtctcatttattaatctttcat 8572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 1645757 - 1645859
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||||| |||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  1645757 aaggaaaatgctagatatcaagaatgattttataagaaagaaccaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 1645856  T
Q  411 cat 413  Q
    |||    
T  1645857 cat 1645859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 24211169 - 24211267
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  24211169 aaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttcat 24211267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 15187831 - 15187730
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  15187831 aggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatagcacaataatcacctttagatttcagtctcatttattaatctttc 15187732  T
Q  412 at 413  Q
    ||    
T  15187731 at 15187730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 26041907 - 26042008
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  26041907 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttc 26042006  T
Q  412 at 413  Q
    ||    
T  26042007 at 26042008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 37985850 - 37985951
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||    
T  37985850 aggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtcccatttattaatctttc 37985949  T
Q  412 at 413  Q
    ||    
T  37985950 at 37985951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 40779923 - 40780024
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  40779923 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttc 40780022  T
Q  412 at 413  Q
    ||    
T  40780023 at 40780024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 3596836 - 3596936
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||  |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  3596836 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgatatggcacaataatcacctttagatttcagtctcatttattaatctttca 3596935  T
Q  413 t 413  Q
    |    
T  3596936 t 3596936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 6108028 - 6108128
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  6108028 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataatcacctttagatttcagtctcatttattaatctttca 6108127  T
Q  413 t 413  Q
    |    
T  6108128 t 6108128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 10044618 - 10044518
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  10044618 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcaatctcatttattaatctttca 10044519  T
Q  413 t 413  Q
    |    
T  10044518 t 10044518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 17841645 - 17841745
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  17841645 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 17841744  T
Q  413 t 413  Q
    |    
T  17841745 t 17841745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 14129128 - 14129029
Alignment:
Q  314 gaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  14129128 gaaaatgctagatatcaagaatgattttataagaaatattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttcat 14129029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 32065017 - 32064916
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  32065017 aggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatgacacaataatcacctttagatttcagtctcatttattaatctttc 32064918  T
Q  412 at 413  Q
    ||    
T  32064917 at 32064916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 25581034 - 25581134
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  25581034 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacataacacaataatcacctttagatttcagtctcatttattaatctttca 25581133  T
Q  413 t 413  Q
    |    
T  25581134 t 25581134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 30055786 - 30055686
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | |||||||| ||||||||||||||| ||||||    
T  30055786 ggaaaatgctagatattaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagattttagtctcatttattaacctttca 30055687  T
Q  413 t 413  Q
    |    
T  30055686 t 30055686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 1503637 - 1503732
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatc 407  Q
    ||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||    
T  1503637 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatc 1503732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 20091598 - 20091696
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||| |||||||    
T  20091598 aaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttattaacctttcat 20091696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 34665649 - 34665551
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||| |||||||    
T  34665649 aaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttattaacctttcat 34665551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 42754837 - 42754937
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||  |||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||    
T  42754837 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggtacaataatcacctttagatttcagtctcatttattaatctttca 42754936  T
Q  413 t 413  Q
    |    
T  42754937 t 42754937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 401
Target Start/End: Original strand, 31347569 - 31347659
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcattta 401  Q
    |||||||||||||||||| |||||||||||  |||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  31347569 aaggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcattta 31347659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 315 - 412
Target Start/End: Complemental strand, 38017201 - 38017103
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataa-tcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| |||||||| | | |||||||||||||||||||||||||||||||||    
T  38017201 aaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatttacctttagatttcagtctcatttattaatctttca 38017103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 413
Target Start/End: Original strand, 39772608 - 39772697
Alignment:
Q  324 gatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||| || ||||||||||||||||    
T  39772608 gatatcaagaatgattttataagaaagatccaagaatgacatgacacaataatcacctttagatttcagtttcgtttattaatctttcat 39772697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 37132477 - 37132575
Alignment:
Q  315 aaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||| ||||||||||||| |||||||||| || |||||| ||| ||||||||||| | |||||||||||||| ||||||||| ||||||    
T  37132477 aaaatgctagatatcaagaatgattttatcaagaaagattcatgaatgacatgacacaataatcacccttagatttcagtcttatttattaacctttca 37132575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 7022251 - 7022159
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||||||| || ||||||||  |||||||||| ||||||||| | ||||||||||||  | ||||||||||||||||||||||    
T  7022251 aaggaaaatgctagatatcaacaatgatttatcaagaaagattcaagaatgacaagtcacaataatcgcccttagatttcagtctcatttatt 7022159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 7017651 - 7017743
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||||||| |||||||||||  ||||||| ||  |||||||| || | | |||||||||| ||||||||||||||||||||||    
T  7017651 aaggaaaatgctagatatcaagaatgatttatcaagaaatatttaagaatgacattttataataatcatccttagatttcagtctcatttatt 7017743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 32394114 - 32394027
Alignment:
Q  325 atattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||| ||||||||||||| || ||| ||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  32394114 atatcaagaatgattttataaaaaatatttaagaatgacatg-cacaataatcacctttagatttcagtctcatttattaatctttcat 32394027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 35353299 - 35353211
Alignment:
Q  325 atattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||| |||| | |||||||||||||||||||||    
T  35353299 atatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttaaattttaatctcatttattaatctttcat 35353211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 8454062 - 8454003
Alignment:
Q  354 caagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  8454062 caagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttcat 8454003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 3890412 - 3890502
Alignment:
Q  316 aaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaa 405  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||||||| || |||||||| | |||||||| | ||| |||||||||    
T  3890412 aaatgctagatatcaagaatgattttatcaagaaagattcaagaatgatatggcagaataatcaccattagattttaatcttatttattaa 3890502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 405
Target Start/End: Original strand, 41819593 - 41819655
Alignment:
Q  343 caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaa 405  Q
    |||||||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||||    
T  41819593 caagaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttattaa 41819655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 27835293 - 27835345
Alignment:
Q  358 aatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||    
T  27835293 aatgatatgacacaataatcatccttagatttcaatctcatttattaaccttt 27835345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 30834849 - 30834931
Alignment:
Q  312 aggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagt 393  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||  |||||||| ||| || ||||| || | ||||||||||||    
T  30834849 aggaaaatgatagatatcaagaatgattttatcaagaaagattaaagaatgacatgacagaataaccacccttagatttcagt 30834931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 13355120 - 13355018
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||    
T  13355120 aaggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacttttagatttcagtctcatttattaatcttt 13355021  T
Q  411 cat 413  Q
    |||    
T  13355020 cat 13355018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 3989342 - 3989246
Alignment:
Q  317 aatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||||    
T  3989342 aatgctagatatcaagaatgattttataagaaagatccaagaatgacatgacacaataataacctttagatttcagtctcatttattaatctttcat 3989246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 7475303 - 7475403
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  7475303 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgatatgacataataatcacctttagatttcagtctcatttattaatctttca 7475402  T
Q  413 t 413  Q
    |    
T  7475403 t 7475403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 9293370 - 9293470
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||    
T  9293370 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttattaatctttca 9293469  T
Q  413 t 413  Q
    |    
T  9293470 t 9293470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 10662158 - 10662058
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  10662158 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataatcacctttagatttcagtctcatttattaatctttca 10662059  T
Q  413 t 413  Q
    |    
T  10662058 t 10662058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 33380477 - 33380377
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  33380477 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 33380378  T
Q  413 t 413  Q
    |    
T  33380377 t 33380377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 35161029 - 35160929
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  35161029 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 35160930  T
Q  413 t 413  Q
    |    
T  35160929 t 35160929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 23267857 - 23267957
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  23267857 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 23267956  T
Q  413 t 413  Q
    |    
T  23267957 t 23267957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 31174633 - 31174730
Alignment:
Q  316 aaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| |||||||| |  |||||||||||| |||||||||||||||||||||    
T  31174633 aaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataaactcctttagatttcaatctcatttattaatctttcat 31174730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 43331183 - 43331092
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    ||||||||||||||||| |||||||||||  |||||||||| ||||||||| |||  |||||||||| ||||||||||||||||||||||||    
T  43331183 aggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggtacaataatcacctttagatttcagtctcatttatt 43331092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 22592985 - 22592880
Alignment:
Q  311 aaggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttaga--tttcagtctcatttattaatc 407  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||||||||| | |||||  ||||||||| ||||||||| |    
T  22592985 aaggaaaatgctagatatcaagaatgattttatcaagaaagattcaagaatgacatgacacaataatcacccttagatttttcagtcttatttattaacc 22592886  T
Q  408 tttcat 413  Q
    ||||||    
T  22592885 tttcat 22592880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 21936322 - 21936252
Alignment:
Q  343 caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||| ||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  21936322 caagaatgatccaagaatgacatggcacaataatcacctttagatttcagtttcatttattaatctttcat 21936252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 21393483 - 21393570
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||| |||||||||||  ||||||| || ||||||||| ||| ||||||||||| | ||| ||||||||||||||||||    
T  21393483 aaaatgctagatatcaagaatgatttatcaagaaa-attcaagaatgacatgacacaataatcacccttaaatttcagtctcatttatt 21393570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 413
Target Start/End: Original strand, 16767287 - 16767357
Alignment:
Q  343 caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||||| ||||||||| ||| |||||||||||   |||||||||||||||||||||||| |||||||    
T  16767287 caagaaagattcaagaatgacatgacacaataatcactcttagatttcagtctcatttattaacctttcat 16767357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 9723677 - 9723586
Alignment:
Q  313 ggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||| ||||||| ||||||||||| | ||||||| ||  |||||||| ||| || |||||||| |||||||||||||||| |||||||    
T  9723677 ggaaaatgttagatatcaagaatgatttgatcaagaaatatttaagaatgacatgacagaataatcacctttagatttcagtcttatttatt 9723586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 14941200 - 14941259
Alignment:
Q  354 caagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||| ||| ||||||||||||| |||||||||| ||| ||||||||| |||||||    
T  14941200 caagaatgacatgacacaataatcatccttagatttcaatcttatttattaacctttcat 14941259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 34320993 - 34321042
Alignment:
Q  354 caagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    ||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  34320993 caagaatgacatggcacaataatcacccttagatttcagtctcatttatt 34321042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 37335894 - 37335824
Alignment:
Q  334 atgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    ||||||||| ||||||||||  || ||||| ||| |||| |||||| | ||||||||||||||||||||||    
T  37335894 atgattttatcaagaaagatttaataatgacatgacacagtaatcacccttagatttcagtctcatttatt 37335824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 14138938 - 14138837
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  14138938 aggaaaatgctagatattaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcaatctcatttattaatctttc 14138839  T
Q  412 at 413  Q
    ||    
T  14138838 at 14138837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 8145643 - 8145543
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  8145643 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 8145544  T
Q  413 t 413  Q
    |    
T  8145543 t 8145543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 4892473 - 4892372
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  4892473 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttc 4892374  T
Q  412 at 413  Q
    ||    
T  4892373 at 4892372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 37321587 - 37321688
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  37321587 aggaaaatgctagatatcaagaatgattttataagaaatattcaagaatgaaatggcacaataatcacctttagatttcagtctcatttattaatctttc 37321686  T
Q  412 at 413  Q
    ||    
T  37321687 at 37321688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 33584124 - 33584224
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  33584124 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 33584223  T
Q  413 t 413  Q
    |    
T  33584224 t 33584224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 25398510 - 25398408
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  25398510 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaacaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 25398411  T
Q  411 cat 413  Q
    |||    
T  25398410 cat 25398408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 3521801 - 3521902
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  3521801 aggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttc 3521900  T
Q  412 at 413  Q
    ||    
T  3521901 at 3521902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 2477906 - 2477806
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||||||| ||| |||||| |||| |||||||||||||||| ||||||||||||||||    
T  2477906 ggaaaatgctagatatcaagaatgattttataagaaagatctaagaatgacatggcacaatgatcacctttagatttcagtcttatttattaatctttca 2477807  T
Q  413 t 413  Q
    |    
T  2477806 t 2477806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 6043307 - 6043407
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  6043307 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 6043406  T
Q  413 t 413  Q
    |    
T  6043407 t 6043407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 12851069 - 12850972
Alignment:
Q  316 aaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||||| ||||||||||||| |||||| || ||||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||    
T  12851069 aaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataaccacctttagatttcagtctcatttattaatctttcat 12850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 3363048 - 3362949
Alignment:
Q  314 gaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||||||| ||||||||||||| |||||| ||  |||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||    
T  3363048 gaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatgacacaataaccacctttagatttcagtctcatttattaatctttcat 3362949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 12614531 - 12614633
Alignment:
Q  312 aggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    ||||||||||||||||| ||| ||||||||| ||| ||||||  |||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  12614531 aggaaaatgctagatatcaagtatgattttatcaaaaaagatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaaccttt 12614630  T
Q  411 cat 413  Q
    |||    
T  12614631 cat 12614633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 22912852 - 22912942
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||||| |||||||||||  |||||||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  22912852 ggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatt 22912942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 38899520 - 38899621
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaaga-tccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttc 411  Q
    |||||||||||||||| ||||||||||||| || ||| | | ||||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||    
T  38899520 ggaaaatgctagatatcaagaatgattttataaaaaaaaattcaagaatgacatggcacaataaccacctttagatttcagtctcatttattaatctttc 38899619  T
Q  412 at 413  Q
    ||    
T  38899620 at 38899621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 11360947 - 11361026
Alignment:
Q  334 atgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  11360947 atgattttataagaaagattcaagaatgacatggcacaataatcatctttagatttcaatctaatttattaatctttcat 11361026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 17545476 - 17545567
Alignment:
Q  312 aggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    ||||||||||||||||| |||||||||||  ||| ||| ||  |||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  17545476 aggaaaatgctagatatcaagaatgatttatcaaaaaatatttaagaatgacatgacacaataatcatccttagatttcagtctcatttatt 17545567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 4433845 - 4433903
Alignment:
Q  355 aagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||    
T  4433845 aagaatgacatggcacaataatcacctttagatttcagtcttatttattaatctttcat 4433903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 48119 - 48019
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  48119 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatagcacaataatcatctttagatttcagtctcatttattaatctttca 48020  T
Q  413 t 413  Q
    |    
T  48019 t 48019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 18365369 - 18365469
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  18365369 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatagcacaataatcacctttagatttcagtctcatttattaatctttca 18365468  T
Q  413 t 413  Q
    |    
T  18365469 t 18365469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 18370633 - 18370733
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  18370633 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatagcacaataatcacctttagatttcagtctcatttattaatctttca 18370732  T
Q  413 t 413  Q
    |    
T  18370733 t 18370733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 33695121 - 33695221
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33695121 ggaaaatgctagatatcaagaatgattttataagaaatatttaagaatgatatgtcacaataatcacctttagatttcagtctcatttattaatctttca 33695220  T
Q  413 t 413  Q
    |    
T  33695221 t 33695221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 23290874 - 23290976
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| || |||||||||| ||||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  23290874 aaggaaaatgctagatatcaaaaatgattttataagaaagattcaagaatgatatggcacaataattacctttagatttcagtctcatttattaatcttt 23290973  T
Q  411 cat 413  Q
    |||    
T  23290974 cat 23290976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 33696969 - 33696867
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||||||  |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  33696969 aaggaaaatgctagatatcaagaatgattttataagaaagatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 33696870  T
Q  411 cat 413  Q
    |||    
T  33696869 cat 33696867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 17175816 - 17175916
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||    
T  17175816 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggtacaataatcacctttagatttcagtctcatttattaatctttca 17175915  T
Q  413 t 413  Q
    |    
T  17175916 t 17175916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 28675420 - 28675318
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||| ||||    
T  28675420 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttattaaccttt 28675321  T
Q  411 cat 413  Q
    |||    
T  28675320 cat 28675318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 32702477 - 32702375
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||    
T  32702477 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataattacctttagatttcagtctcatttattaatcttt 32702378  T
Q  411 cat 413  Q
    |||    
T  32702377 cat 32702375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 17705262 - 17705363
Alignment:
Q  311 aaggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||| ||||    
T  17705262 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatca-ccttagatttcagtctcatttattaaccttt 17705360  T
Q  411 cat 413  Q
    |||    
T  17705361 cat 17705363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 2309218 - 2309318
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||  ||||||||| ||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||| ||||||    
T  2309218 ggaaaatgctagatatcaacgatgattttataagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttattaacctttca 2309317  T
Q  413 t 413  Q
    |    
T  2309318 t 2309318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 6031537 - 6031632
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatcttt 410  Q
    ||||| || ||||| ||||||||||||| || ||||||  |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  6031537 aaaatactggatatcaagaatgattttataaaaaagatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatcttt 6031632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 11548386 - 11548474
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttatt 403  Q
    |||||||||||||| |||||||||||  |||||| ||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  11548386 aaaatgctagatatcaagaatgatttatcaagaacgattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatt 11548474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 413
Target Start/End: Original strand, 18889469 - 18889539
Alignment:
Q  343 caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    |||||| ||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  18889469 caagaatgattcaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttcat 18889539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 29693718 - 29693615
Alignment:
Q  311 aaggaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctt 409  Q
    |||||||||||||||||| ||||||||||||| ||||||||||  |||||||| ||| || |||||| | | |||||||||||||| ||||||||  |||    
T  29693718 aaggaaaatgctagatatcaagaatgattttatcaagaaagatttaagaatgacatggcagaataatgacccttagatttcagtcttatttattatcctt 29693619  T
Q  410 tcat 413  Q
    ||||    
T  29693618 tcat 29693615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 6127508 - 6127447
Alignment:
Q  352 tccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||| ||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  6127508 tccaagaatgacatggcacaataatcacttttagatttcagtctcatttattaatctttcat 6127447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 34238883 - 34238947
Alignment:
Q  314 gaaaatgctagatattaagaatgatttta-caagaaagatccaagaatgatatgtcacaataatca 378  Q
    ||||||||||||||| ||||||||||||| |||| ||||| ||||||||| ||| |||||||||||    
T  34238883 gaaaatgctagatatcaagaatgattttatcaag-aagattcaagaatgacatgacacaataatca 34238947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 9752109 - 9752141
Alignment:
Q  381 tttagatttcagtctcatttattaatctttcat 413  Q
    ||||||||||||||||||||||||| |||||||    
T  9752109 tttagatttcagtctcatttattaacctttcat 9752141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 4666 - 4566
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||||||||||| ||||||||||||| |||||| ||  |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  4666 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgatatggcacaataatcacctttagatttcagtctcatttattaatctttca 4567  T
Q  413 t 413  Q
    |    
T  4566 t 4566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 11891 - 11791
Alignment:
Q  313 ggaaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttca 412  Q
    |||||||| ||||||| ||||||||||||| |||||| ||  |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  11891 ggaaaatgttagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttattaatctttca 11792  T
Q  413 t 413  Q
    |    
T  11791 t 11791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 13110 - 13012
Alignment:
Q  315 aaaatgctagatattaagaatgattttacaagaaagatccaagaatgatatgtcacaataatcatctttagatttcagtctcatttattaatctttcat 413  Q
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T  13110 aaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatgacacaataattacctttagatttcagtctcatttattaatctttcat 13012  T

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