View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_183 (Length: 270)
Name: NF9913A_low_183
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_183 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 35361892 - 35362042
Alignment:
| Q |
6 |
atcaataaaccagtttgtggacctctaattagtgcttgttatgataaactaaaggttggttctacctgtgtaatttaaaatgtttgtaatattcgtatag |
105 |
Q |
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| T |
35361892 |
atcaataaaccagtttgtggacctctaattagtgcttgttatgataaactaaaggttggttctacctgtgtaatttaaaatgtttgtaatatccgtatgg |
35361991 |
T |
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| Q |
106 |
gctggcctacacttttgtgagaatttactagtttaggttttatttactcaa |
156 |
Q |
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| T |
35361992 |
gcaggcctacacttttgtgagaatttactagtttaggttttatttactcaa |
35362042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 35362076 - 35362155
Alignment:
| Q |
191 |
aataatacatgaacagttggcaaaggattaaagtctcaaaagtttgtcaacctagtttaaatgtcttctattctctttga |
270 |
Q |
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| T |
35362076 |
aataatacatgaacagttggcaaaggattaaagtctcaaaagtttgccaacctagtttgaatgtcttctattctctttga |
35362155 |
T |
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