View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_184 (Length: 269)
Name: NF9913A_low_184
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_184 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 11059874 - 11060066
Alignment:
| Q |
19 |
tgttatatagcatgaatagagtgatggatgtttttgtagaaattaccatttgcatgctatttgtatgtttttgtggatgttaatacatgagaagaatatc |
118 |
Q |
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| T |
11059874 |
tgttatatagcatgaatagagtgatggatgtttttgtagaaattaccatttgcatgctatttgtatgtttttgtggatgttgatacatgagaagaatatc |
11059973 |
T |
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| Q |
119 |
cctaat-nnnnnnnntacatgagaagaataaaacatacatgaaataaaaggagtgacttaaaagctataaaacactgacttggacacgataat |
210 |
Q |
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| T |
11059974 |
cctaataaaaaaaaatacatgagaagaataaaacatacatgaaataaaaggagtgacttaaaagctataaaacactgactcggacacgataat |
11060066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 11060102 - 11060156
Alignment:
| Q |
208 |
aattgaagtaatcaaatacaatcacaagtgccacaccgtcaatctatattcttgg |
262 |
Q |
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| T |
11060102 |
aattgaagtaatcaaatacaatcacaagtaccacaccgtcaatctatattgttgg |
11060156 |
T |
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