View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_185 (Length: 269)
Name: NF9913A_low_185
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_185 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 43298612 - 43298361
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| || |
|
|
| T |
43298612 |
acatcatctgcaagaagaaggtgggatatttgaggcccttcattggtgatatgaataggatcccaatttccttgaatcacgacgttgttaatagcaatag |
43298513 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43298512 |
agagattttccatg-ataaaatgaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
43298414 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43298413 |
taaaatagagaaggaggatgatgtgacacaatgcatgataagcttcatggtga |
43298361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 62 - 269
Target Start/End: Original strand, 5193036 - 5193243
Alignment:
| Q |
62 |
gtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagagagagattttccatgcataaaaagaataggtaaggagagagcggat |
161 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||| |||||||||||| ||| |||||| |||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
5193036 |
gtgatgtgaataggatccctatttccttgaatcacggcgttgttaataacaatagagagctttttcatgcataaaatgaagaggtaaggagagagcggat |
5193135 |
T |
|
| Q |
162 |
caccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatccataaaatagataaggaggatgatgtgacacaatgcatgataagctt |
261 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| | || || |||||||||| ||||||||| ||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
5193136 |
caccttgtccaagaccatgtgaaggcttaaaggaggacattttattaccgttccataaaacagaaaatgtagatgatgtgacacaatgcatgataagctt |
5193235 |
T |
|
| Q |
262 |
catggtga |
269 |
Q |
| |
|
||||||| |
|
|
| T |
5193236 |
gatggtga |
5193243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 32890667 - 32890474
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||| |||| |||||||| ||||| ||||||||||||| || ||| || || |||||||||| || |
|
|
| T |
32890667 |
acatcatctgcaaaaagaaggtgggatatcttcggtcctccattagtgatatggatagggtcccaatttccttgaagcactgcattattaatagcaatag |
32890568 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattacc |
210 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||| || ||||||||||||| ||||| ||||||||| |
|
|
| T |
32890567 |
agagtttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattacc |
32890474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 10103575 - 10103827
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||| |||| ||||| || ||||| ||||||||||||| | ||| || ||||| ||||||| || |
|
|
| T |
10103575 |
acatcatctgcaaaaagaagatgagatatctgaggccctccattagtgatgtggataggttcccaatttccttgatgcactgcattgttgatagcaatag |
10103674 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
|||| || |||||||| | | |||||||||||||||||||||| |||||||||| ||||||| | |||||| || ||||| ||| |||||| |||| |
|
|
| T |
10103675 |
agagcttctccatgcaaaggatgaataggtaaggagagagcggaacaccttgtctgagaccatatgtaggcttgaactagggcattttgttaccgttcca |
10103774 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
||||||||| || | ||| | ||||| |||||||||||||| || ||||||| |
|
|
| T |
10103775 |
taaaatagagaaagttgataaagtgacgcaatgcatgataagtttgatggtga |
10103827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 31324847 - 31325039
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||| |||||||| ||||||| || ||| |||| ||||| || ||||| ||||||||||| | | |||| | || |||||||||| || |
|
|
| T |
31324847 |
acatcatctgcaaagagaaggtgtgatatctttggacctccattagtgatgtggataggttcccaatttccgtggaacacaacattattaatagcaatag |
31324946 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattac |
209 |
Q |
| |
|
| | |||||||||||||| | ||| ||||| ||||| ||||||||||||| |||||| ||||| || |||||||| | ||||||||||||| |
|
|
| T |
31324947 |
acaacttttccatgcataagatgaagaggtagggagatagcggatcaccttatctaaggccatgggagggcttaaagggaggcaatttattac |
31325039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 50452150 - 50451898
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||| || | ||| |||||| | || ||| |||||||||| |||||||| ||| |||||| | ||| || ||||||||||||| || |
|
|
| T |
50452150 |
acatcatctgcaaagagtaagtgagatatccgtggacctccattggtgatttgaataggtgtccaccttccttcatgcaccgcattgttaatagcaatag |
50452051 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
| || || ||||| || | || ||| ||||||||||| |||||||||||||||| || ||||| | ||| || ||| |||| ||| ||||| |||| |
|
|
| T |
50452050 |
atagcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca |
50451951 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
||| ||||| || | ||| || |||||||||||||||||||| || ||||||| |
|
|
| T |
50451950 |
taagatagagaaagtggaggaggtgacacaatgcatgataagtttgatggtga |
50451898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 50236586 - 50236698
Alignment:
| Q |
143 |
aggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatccataaaatagataaggaggatgatgtga |
242 |
Q |
| |
|
|||||||| || ||||||||||||| ||| || ||||||| |||||| |||| ||||| || || ||| ||||||| ||||| ||| || ||| | || |
|
|
| T |
50236586 |
aggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgttcccgttccataagatagagtaggtgggtgaggaga |
50236685 |
T |
|
| Q |
243 |
cacaatgcatgat |
255 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50236686 |
cacaatgcatgat |
50236698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 32725359 - 32725611
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||| |||||| |||||||||| || ||| |||||||||| |||||||||||||||||||||| | || | || || |||||||||| || |
|
|
| T |
32725359 |
acatcatctgcaaaaagaagatgggatatctttggtcctccattggtgatgtgaataggatcccaatttccttgagtcgcggcattattaatagcaatag |
32725458 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
|||| |||||||||||||||| ||| | |||||||||||||| |||||||||||| ||| |||| ||||||||||| | ||||| |||||||||| |||| |
|
|
| T |
32725459 |
agagcttttccatgcataaaatgaagatgtaaggagagagcgaatcaccttgtctgagatcatgggaaggcttaaaggagggcattttattaccgttcca |
32725558 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
||||||||| || | |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32725559 |
taaaatagagaatgtggatgatgtgacacaatgcatgataagcttgatggtga |
32725611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 24893734 - 24893986
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||| || ||||| || ||||| || ||| |||| || || || ||||| |||||| |||||| | |||||||||| ||||||||||| | |
|
|
| T |
24893734 |
acatcatctgcaaagagtaggtgagaaatctggggtcctccattagttatgtgtataggttcccaacttccttgactcacagcgttattaatagcaaggg |
24893833 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
| || ||||||||||||| | ||| || |||||||||||||| ||||||||||| |||||||| | ||||| |||| ||||| ||| ||||| |||| |
|
|
| T |
24893834 |
aaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcca |
24893933 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
||| || || || | ||| || ||||||||||||||||| ||||| ||||||| |
|
|
| T |
24893934 |
taatatggagaatgtggaggaggtgacacaatgcatgatgagcttgatggtga |
24893986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 24990561 - 24990813
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||| |||||||| || ||||| || ||| |||| ||||| |||||||| |||||| |||||| | ||||| || || ||||| | || |
|
|
| T |
24990561 |
acatcatctgcaaacagaaggtgagacatctggggtcctccattagtgatgtgaataggttcccaacttccttggcttacagcattatttatagcgatag |
24990660 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
| || || |||||||| | || ||| || |||||||||||||| ||||||||||| |||||||| | ||||| |||| ||||| ||| |||||| |||| |
|
|
| T |
24990661 |
aaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcca |
24990760 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
||||||||| || | ||| || |||||||| |||||||| || || ||||||| |
|
|
| T |
24990761 |
taaaatagaaaaagtggaggaggtgacacagtgcatgatgagtttgatggtga |
24990813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 35233696 - 35233533
Alignment:
| Q |
62 |
gtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagagagagattttccatgcataaaaagaataggtaaggagagagcggat |
161 |
Q |
| |
|
||||| || ||||| |||||||| |||| || |||||||| || ||||||| ||| | || || ||||| | || ||| ||||| ||||||||| ||| |
|
|
| T |
35233696 |
gtgatgtgtataggctcccaattcccttgaagaacagcgttattgatagcaatagataacttctcgatgcagagaatgaagaggtatggagagagcagat |
35233597 |
T |
|
| Q |
162 |
caccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatccataaaataga |
225 |
Q |
| |
|
||||||||| |||||||| | |||||| ||| | ||||| || || || ||||||||||||| |
|
|
| T |
35233596 |
caccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattccataaaataga |
35233533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 38647077 - 38647329
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||| |||| |||||||| ||||| ||||||||||||| || ||| || || |||||||||| || |
|
|
| T |
38647077 |
acatcatctgcaaaaagaaggtgggatatcttcggtcctccattagtgatatggatagggtcccaatttccttgaagcactgcattattaatagcaatag |
38647176 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||| || ||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
38647177 |
agagcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttcca |
38647276 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
| |||||| |||| |||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
38647277 |
aagaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtga |
38647329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 23424750 - 23424501
Alignment:
| Q |
20 |
tcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagagaga |
119 |
Q |
| |
|
|||||||||| |||||||| || ||||| || ||| |||| || || || ||||| |||||| |||||| | |||||||||| ||||||||||| || | |
|
|
| T |
23424750 |
tcatctgcaaagagaaggtgagaaatctggggtcctccattagttatgtgtataggttcccaacttccttgactcacagcgttattaatagcaagggaaa |
23424651 |
T |
|
| Q |
120 |
gattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatccataa |
219 |
Q |
| |
|
| ||||||||||||| | ||| || |||||||||||||| ||||||||||| |||||||| | ||||| |||| ||||| ||| ||||| ||||||| |
|
|
| T |
23424650 |
gcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttccataa |
23424551 |
T |
|
| Q |
220 |
aatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
|| || || | ||| || ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
23424550 |
tattgagaatgtggaggaggtgacacaatgtatgatgagcttgatggtga |
23424501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 267
Target Start/End: Original strand, 3659636 - 3659760
Alignment:
| Q |
143 |
aggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatccataaaatagataaggaggatgatgtga |
242 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||||| |||||||||| | || | ||||| || |||| |||| ||| |||| ||| |||| || |
|
|
| T |
3659636 |
aggtagggagagagcggatcaccttgacgaagaccatgagtaggcttaaaattaggaagcttattgccattccacaaaacagagaaggtggaggatgaga |
3659735 |
T |
|
| Q |
243 |
cacaatgcatgataagcttcatggt |
267 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
3659736 |
cacaatgcatgatgagcttgatggt |
3659760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 17718394 - 17718505
Alignment:
| Q |
158 |
ggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatccataaaatagataaggaggatgatgtgacacaatgcatgataa |
257 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| || | |||| ||| || || |||| |||||||| |||| |||||| | |||||||||||||| | |
|
|
| T |
17718394 |
ggatcaccctgtcagagaccatgagaaggcttgaagggaggcattttgtttccattccacaaaatagagaaggtggatgaggaaacacaatgcatgatga |
17718493 |
T |
|
| Q |
258 |
gcttcatggtga |
269 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
17718494 |
gcttgatggtga |
17718505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 19019623 - 19019734
Alignment:
| Q |
158 |
ggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatccataaaatagataaggaggatgatgtgacacaatgcatgataa |
257 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| || | |||| ||| || || |||| |||||||| |||| |||||| | |||||||||||||| | |
|
|
| T |
19019623 |
ggatcaccctgtcagagaccatgagaaggcttgaagggaggcattttgtttccattccacaaaatagagaaggtggatgaggaaacacaatgcatgatga |
19019722 |
T |
|
| Q |
258 |
gcttcatggtga |
269 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19019723 |
gcttgatggtga |
19019734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 573444 - 573192
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||| || |||| || || ||||| |||||||||||||||| || ||| | || ||||| |||| || |
|
|
| T |
573444 |
acatcatctacaaaaagaaggtgtgatatctgaggtcccccattcgtaatgtgaatgggatcccaatttccttgaagcactacattattaattgcaacag |
573345 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
|||| || |||||||| | | ||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||| ||| ||||| |||| |
|
|
| T |
573344 |
agagcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattcca |
573245 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
||||||||| || | | |||||||||| ||||||||||||| || ||||||| |
|
|
| T |
573244 |
taaaatagagaacgttggtgatgtgacataatgcatgataagtttgatggtga |
573192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 255
Target Start/End: Complemental strand, 39012683 - 39012544
Alignment:
| Q |
116 |
gagagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcc |
215 |
Q |
| |
|
||||| |||||||| |||| | ||| ||||| |||||||||||||| ||||| | ||||||||||| |||||||||| | || | ||||| || ||| |
|
|
| T |
39012683 |
gagagtttttccatacataggatgaacaggtagggagagagcggatcgccttgacgaagaccatgagtaggcttaaaattaggaagcttattgccattcc |
39012584 |
T |
|
| Q |
216 |
ataaaatagataaggaggatgatgtgacacaatgcatgat |
255 |
Q |
| |
|
| |||| ||| |||| ||| |||| ||||||||||||||| |
|
|
| T |
39012583 |
acaaaacagagaaggtggaggatgagacacaatgcatgat |
39012544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 177667 - 177579
Alignment:
| Q |
101 |
ttgttaatagcaagagagagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggctt |
189 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| | | ||||||||||||||| | || ||||||||||| |||||||||| |||||| |
|
|
| T |
177667 |
ttgttaatggcaagggagagcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggctt |
177579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 16322701 - 16322536
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||| || |||| ||| ||||| ||||||||||| || ||||| ||||||| || || |||||| | |||| || ||||| | | |||||||| || |
|
|
| T |
16322701 |
acatcgtcagcaaaaaggaggtgagatatctgaggtccgtcatttatgatatggatcggttcccaactcccttgaagaacagcatcctgaatagcaacag |
16322602 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgag |
182 |
Q |
| |
|
| || ||||||||||| | | ||| ||||| ||||| ||||| |||||||||| ||| ||||||| |
|
|
| T |
16322601 |
aaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgag |
16322536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 23207764 - 23208002
Alignment:
| Q |
17 |
acatcatctgcaagaagaaggtgggatatctgaggcccttcattggtgatatgaataggatcccaatttccttaaatcacagcgttgttaatagcaagag |
116 |
Q |
| |
|
||||||||||| | |||||||| || ||||| || ||| |||| ||||| |||||||| ||||| |||||| | ||||||| || |||||||||| || |
|
|
| T |
23207764 |
acatcatctgcgaagagaaggtgagaaatctggggtcctccattagtgatgtgaataggttcccatcttccttgactcacagcattattaatagcaatag |
23207863 |
T |
|
| Q |
117 |
agagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcca |
216 |
Q |
| |
|
| || || |||||||||| | ||| || ||||||||||| || |||||||||||||||||||| | ||||| |||| ||||| ||| |||||| |||| |
|
|
| T |
23207864 |
aaagcttctccatgcatagtatgaagagataaggagagagtgggtcaccttgtctaagaccatgtgtgggcttgaaagggggcattttgttaccgttcca |
23207963 |
T |
|
| Q |
217 |
taaaatagataaggaggatgatgtgacacaatgcatgat |
255 |
Q |
| |
|
|||||| || || | ||| || ||||| ||||||||||| |
|
|
| T |
23207964 |
taaaattgagaatgtggaggaggtgacgcaatgcatgat |
23208002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 27781582 - 27781778
Alignment:
| Q |
71 |
ataggatcccaatttccttaaatcacagcgttgttaatagcaagagagagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtc |
170 |
Q |
| |
|
|||||||||||||| |||| || |||| |||||| ||||||| | || || |||||||| | | ||| |||||||| || || || |||||||||| |
|
|
| T |
27781582 |
ataggatcccaattaccttggatgacagagttgttgatagcaaccaaaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtc |
27781681 |
T |
|
| Q |
171 |
taagaccatgagaaggcttaaaagtgggcaatttattaccgatccataaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggt |
267 |
Q |
| |
|
| || ||||||| |||||||| | |||| ||| || ||| |||||| ||| || || | |||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
27781682 |
tgaggccatgagttggcttaaatggaggcattttgttcccgttccatagaatggagaaagtggatgaggtgacacagtgcatgatgagctttatggt |
27781778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 16769959 - 16770068
Alignment:
| Q |
116 |
gagagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttattaccgatcc |
215 |
Q |
| |
|
||||| |||||||| || || | ||| || ||||| || || ||||||||||||| ||||||||||| ||| || ||| |||||||| ||||| ||| |
|
|
| T |
16769959 |
gagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccattcc |
16770058 |
T |
|
| Q |
216 |
ataaaataga |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
16770059 |
ataaaataga |
16770068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 269
Target Start/End: Complemental strand, 3881886 - 3881718
Alignment:
| Q |
101 |
ttgttaatagcaagagagagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggca |
200 |
Q |
| |
|
||||||||||||| ||| || |||||||| || | || ||| |||||| |||| |||||||||||||||| || ||||| | ||| || ||| |||| |
|
|
| T |
3881886 |
ttgttaatagcaatagatagcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca |
3881787 |
T |
|
| Q |
201 |
atttattaccgatccataaaatagataaggaggatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
||| ||||| ||||||| ||||| |||| ||| || |||||||||||||||||||| || ||||||| |
|
|
| T |
3881786 |
ttttgttaccattccataagatagagaaggtggaggaggtgacacaatgcatgataagtttgatggtga |
3881718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 48848375 - 48848261
Alignment:
| Q |
68 |
tgaataggatcccaatttccttaaatcacagcgttgttaatagcaagagagagattttccatgcataaaaagaataggtaaggagagagcggatcacctt |
167 |
Q |
| |
|
|||||||||||| |||| |||| | | || ||||||||||| || ||||| ||||||||||| | || || |||||||| |||||||||||||| | |
|
|
| T |
48848375 |
tgaataggatcctaattcccttgactgacggcgttgttaatggccgaggagagcttttccatgcagagaataaagaggtaaggggagagcggatcaccct |
48848276 |
T |
|
| Q |
168 |
gtctaagaccatgag |
182 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
48848275 |
gtctgagcccatgag |
48848261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 46784463 - 46784560
Alignment:
| Q |
110 |
gcaagagagagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttatt |
207 |
Q |
| |
|
|||||||| || |||| |||||| | | ||| ||||| ||||| || ||||||||||||||||| ||||||| ||| || |||| ||||||||||| |
|
|
| T |
46784463 |
gcaagagaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatt |
46784560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 24133354 - 24133390
Alignment:
| Q |
233 |
gatgatgtgacacaatgcatgataagcttcatggtga |
269 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
24133354 |
gatgatgtaacacaatgcatgataagcttaatggtga |
24133390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 23620609 - 23620706
Alignment:
| Q |
110 |
gcaagagagagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaatttatt |
207 |
Q |
| |
|
|||||||| ||||||||||| || | || ||||||||| ||||| | | |||||||||||| |||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
23620609 |
gcaagagaaagattttccatacaaagaatgaataggtagggagacaacatatcaccttgtctgagaccatgagtgggcttgaaaatgggcaatttatt |
23620706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 261
Target Start/End: Complemental strand, 7817299 - 7817143
Alignment:
| Q |
105 |
taatagcaagagagagattttccatgcataaaaagaataggtaaggagagagcggatcaccttgtctaagaccatgagaaggcttaaaagtgggcaattt |
204 |
Q |
| |
|
||||||||| | | || ||||||||||| | || ||| ||||||||||| | || ||||| ||||| |||||||||| |||||| |||| || | ||| |
|
|
| T |
7817299 |
taatagcaacatatagcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagttt |
7817200 |
T |
|
| Q |
205 |
attaccgatccataaaatagataaggaggatgatgtgacacaatgcatgataagctt |
261 |
Q |
| |
|
|| || ||||||||||||| || ||| |||| |||||||||||||| ||||| |
|
|
| T |
7817199 |
gttcccattccataaaatagagtagttggaggatgatacacaatgcatgatgagctt |
7817143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University