View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_186 (Length: 269)
Name: NF9913A_low_186
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_186 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 36506637 - 36506388
Alignment:
| Q |
19 |
accttgatcatagctttgttgaaagacaattcctactccacaaaaagagaattctactactcagacaaggaattatttgagtacaagcaggtaaaatgtc |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36506637 |
accttgatcatatatttgttgaaagacaattcctactccacaaaaagagaattctactactcagacaaggaattatttgagtacaagcaggtaaaatatc |
36506538 |
T |
|
| Q |
119 |
aattaattccatttttctcttgcatgtttccatttcttgttatcaaattgaagtgtgtgtccataagtgtgctgctgtttggtttttggtgttttttgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36506537 |
aattaattccatttttctcttgcatgtttccatttcttgttatc-aattgaagtgtgtgtccataagtgtgctgctgtttggtttttgctgttttttgtt |
36506439 |
T |
|
| Q |
219 |
cttagcttctcagattttgctagttagcgtagagggtttgttgttgttagt |
269 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
36506438 |
cttagcttctcagattttgctagttggcgtagaggggttgttgttgttagt |
36506388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University