View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_199 (Length: 261)
Name: NF9913A_low_199
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_199 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 39695340 - 39695097
Alignment:
| Q |
12 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaaccaggtaatagcactctgtcaagaaatgtgaggaa |
111 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39695340 |
tcaacacatgtcctgctcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
39695241 |
T |
|
| Q |
112 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatggacgatccatgactaaagcttgaagtacaacc |
211 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39695240 |
aatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
39695141 |
T |
|
| Q |
212 |
aagctactttggattgttattggagttgctaagaatatacttga |
255 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
39695140 |
aagcaactttggattgctattggagttgctaagaatatacttga |
39695097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 39934775 - 39935018
Alignment:
| Q |
12 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaaccaggtaatagcactctgtcaagaaatgtgaggaa |
111 |
Q |
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| T |
39934775 |
tcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaa |
39934874 |
T |
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| Q |
112 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatggacgatccatgactaaagcttgaagtacaacc |
211 |
Q |
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| T |
39934875 |
aatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaacc |
39934974 |
T |
|
| Q |
212 |
aagctactttggattgttattggagttgctaagaatatacttga |
255 |
Q |
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| T |
39934975 |
aagctactttggattgctattggagttgataggaatatacttga |
39935018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 39704252 - 39704009
Alignment:
| Q |
12 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaaccaggtaatagcactctgtcaagaaatgtgaggaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||| || ||||||||| |||| | |||| ||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
39704252 |
tcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaaggtgaggaa |
39704153 |
T |
|
| Q |
112 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatggacgatccatgactaaagcttgaagtacaacc |
211 |
Q |
| |
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||||| || |||||||| ||| |||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||| | |
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| T |
39704152 |
aatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttgaagtaccgtc |
39704053 |
T |
|
| Q |
212 |
aagctactttggattgttattggagttgctaagaatatacttga |
255 |
Q |
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| T |
39704052 |
acactactttggattgctattggagttgctaagaatatacttga |
39704009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 39929115 - 39929317
Alignment:
| Q |
4 |
aagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaaccaggtaatagcactctgtcaagaaat |
103 |
Q |
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||||| ||| ||||||||||||||||||||| | |||||| || |||| ||| ||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
39929115 |
aagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaa |
39929214 |
T |
|
| Q |
104 |
gtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatggacgatccatgactaaagcttgaa |
203 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| |||||| | ||||||||||||||||||||||| |
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| T |
39929215 |
gtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatggtatcctaaagaacgatccatgactaaagcttgaa |
39929314 |
T |
|
| Q |
204 |
gta |
206 |
Q |
| |
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||| |
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| T |
39929315 |
gta |
39929317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 38061800 - 38062001
Alignment:
| Q |
12 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcct-ggtaaccttatgccaaccaggtaatagcactctgtcaagaaatgtgagga |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||| | ||| | | ||| |||||| || |||| ||||||||||||||| ||||||| |
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| T |
38061800 |
tcaacacatagcctactcctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgagga |
38061899 |
T |
|
| Q |
111 |
aaatgggtgctgatattaagac---aataacagaaacagaactagctgggattttaaaatggggtcctaatggacgatccatgactaaagcttgaagtac |
207 |
Q |
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|||| | || ||||||||| || ||||||||||||||||| |||||||||||||||||| | ||||| | ||||||||||| |||| |||||||||| |
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| T |
38061900 |
aaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtac |
38061999 |
T |
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| Q |
208 |
aa |
209 |
Q |
| |
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|| |
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| T |
38062000 |
aa |
38062001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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