View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_2 (Length: 814)
Name: NF9913A_low_2
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 645; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 23 - 798
Target Start/End: Complemental strand, 36373472 - 36372697
Alignment:
| Q |
23 |
catcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcacaggatttgaagttcaaaacatt |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373472 |
catcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcacaggatttgaagttcaaaacatt |
36373373 |
T |
|
| Q |
123 |
cataggaccactaatattaggatcattgcccataacttcatacacaatcttgttttgaaccgatcttatgacatatgaaaccttatttaacgatgacgcg |
222 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36373372 |
cattggaccactaatattaggatcattgcccataacttcatacacaatcttgttttgaaccgatcttatgacatatgaaaccttctttaacgatgacgcg |
36373273 |
T |
|
| Q |
223 |
gtaacaaaccaggaaagatcagacaaaaacttcccgtaaagtagtcttgattgtggcaatgaagagcagtcttcggatgaatcccacatataaagattaa |
322 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373272 |
gtaacaaaccgggaaagatcagacaaaaacttcccgaaaagtagtcttgattgtggcaatgaagagcagtcttcggatgaatcccacatataaagattaa |
36373173 |
T |
|
| Q |
323 |
cttttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatgctaatttgcttaataccaatcacactaacatcttt |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36373172 |
attttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttggaggatgctaatttgcttaataccaatcacactaacctcttt |
36373073 |
T |
|
| Q |
423 |
cttcagagttcttatctctgtatcaactgaatcttgatcattatagaaatttacatgaaactgacatgaacagttatcagatttatgaggctgtctgtgt |
522 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| |||||||||| | |||||||| ||||| | ||||||| |
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| T |
36373072 |
cttcagagttcttatctctgtaccaactgaatcttgatcattataaaaatttactttaaaccgacatgaacattggtcagatttgtgaggttttctgtgt |
36372973 |
T |
|
| Q |
523 |
atggaattcactctagcatcagtcgacatctacaatttacaaaaaatacaaatatcaataaact-aagaataataaataaatgtatacggaagaatgaga |
621 |
Q |
| |
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| |||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
36372972 |
acggaattcactctagcatcagtcgatatctacagtttac-aaaaatataaatatcaataaactaaagaataataaataaatgtatacagaagaatgaga |
36372874 |
T |
|
| Q |
622 |
gtaagaaatgtagtttaataaaaactatatataactaagaagattgaacttactgggctagattgacgtgaatttttattgtactcaaagcttgatagca |
721 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
36372873 |
gtaagaaatgtagtttaataaaaactatatataactaagaagattgaacttactgggctagattgacgtgattttttattgtattcaaagcttgatagca |
36372774 |
T |
|
| Q |
722 |
cagatatgtcaattccaggtcttatgaaactggagcaatcagccggagtagcttgtcttgatcgtatccggatgtcc |
798 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
36372773 |
cagatatgtcaattccaggtcttacgaaactggagcaatcagccggagtagcttctcttgatcgtaaccgaatgtcc |
36372697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 134 - 566
Target Start/End: Original strand, 32252523 - 32252955
Alignment:
| Q |
134 |
taatattaggatcattgcccataacttcatacacaatcttgttttgaaccgatcttatgacatatgaaaccttatttaacgatgacgcggtaacaaacca |
233 |
Q |
| |
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|||||| || |||||| |||||||||| |||||||||||||||||| || |||||||| |||||||||| ||||| | || | | |||||||| |
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| T |
32252523 |
taatatcagtatcatttcccataacttgatacacaatcttgttttgcacagatcttatatggaatgaaaccttctttaaaaaagatgtaattacaaacca |
32252622 |
T |
|
| Q |
234 |
ggaaagatcagacaaaaacttcccgtaaagtagtcttgattgtggcaatgaagagcagtcttcggatgaatcccacatataaagattaacttttgaacta |
333 |
Q |
| |
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||||||||||| |||| ||||| ||||| ||| ||||||| ||||||||||| ||||| |||||||||||| ||||| | |||| || || || |
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| T |
32252623 |
cgaaagatcagatgaaaatttcccaacaagtaatctagattgtgataatgaagagcaatcttctgatgaatcccacctataaggcttaatttcagaggta |
32252722 |
T |
|
| Q |
334 |
tcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatgctaatttgcttaataccaatcacactaacatctttcttcagagttc |
433 |
Q |
| |
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||||||||| ||||| | |||||||||||||| ||||||| ||||| |||||| |||||| | || ||||| || |||| ||||| || |||||| |
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| T |
32252723 |
tcattttcttttaacaagccttcacaagtattatgttgaagcctttggaggatgaaaatttgatccattccaattgcattaacctctttattaagagttt |
32252822 |
T |
|
| Q |
434 |
ttatctctgtatcaactgaatcttgatcattatagaaatttacatgaaactgacatgaacagttatcagatttatgaggctgtctgtgtatggaattcac |
533 |
Q |
| |
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||| ||||||| ||| |||| ||||||| | ||| || ||||||| ||| ||||||||||| | ||| ||||| ||||| ||||| ||||| ||||| | |
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| T |
32252823 |
ttacctctgtaccaagtgaaccttgatcgtcataaaagtttacataaaattgacatgaacattgatcggatttgtgaggttgtctatgtatagaatttat |
32252922 |
T |
|
| Q |
534 |
tctagcatcagtcgacatctacaatttacaaaa |
566 |
Q |
| |
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||| |||||| || ||||||||||||||||||| |
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| T |
32252923 |
tcttgcatcaatccacatctacaatttacaaaa |
32252955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 748 - 798
Target Start/End: Original strand, 8731980 - 8732030
Alignment:
| Q |
748 |
aaactggagcaatcagccggagtagcttgtcttgatcgtatccggatgtcc |
798 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||||| |||||| |
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| T |
8731980 |
aaactggagcaatcagccgtagtagcttctcttgatcgtatccgaatgtcc |
8732030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 748 - 798
Target Start/End: Original strand, 9083867 - 9083917
Alignment:
| Q |
748 |
aaactggagcaatcagccggagtagcttgtcttgatcgtatccggatgtcc |
798 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||| |||||| |
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| T |
9083867 |
aaactggagcaatcagccgtagtagcttctcttgatcgtatccgaatgtcc |
9083917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 329 - 655
Target Start/End: Complemental strand, 11415885 - 11415560
Alignment:
| Q |
329 |
aactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatgctaatttgcttaataccaatcacactaacatctttcttcag |
428 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||||| |||||| ||| ||||||||| |||||| |||||| | || ||||| ||| | || ||||| ||||| |
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|
| T |
11415885 |
aactatcagttt-tcttaacaatctttcacatgtattttgttaaagtctttggaggatgaaaatttgatatattccaattacattgacctctttattcag |
11415787 |
T |
|
| Q |
429 |
agttcttatctctgtatcaactgaatcttgatcattatagaaatttacatgaaactgacatgaacagttatcagatttatgaggctgtctgtgtatggaa |
528 |
Q |
| |
|
|||| ||| || |||| ||| |||| ||||||||| ||||||||||||||||| ||||||||| | | |||||||| | ||| ||||||||||||||| |
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|
| T |
11415786 |
agtttttaactttgtaccaagtgaaccttgatcatcgtagaaatttacatgaaattgacatgaatattgatcagattcgttaggttgtctgtgtatggaa |
11415687 |
T |
|
| Q |
529 |
ttcactctagcatcagtcgacatctacaatttacaaaaaatacaaatatcaataaact-aagaataataaataaatgtatacggaagaatgagagtaaga |
627 |
Q |
| |
|
|| ||||||||| ||| ||||||||||||| | ||||||| ||||||||||||||| ||||||| ||||||||| ||| || ||||||| |||| |
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| T |
11415686 |
tttggtctagcatctgtccacatctacaatttgc-aaaaatataaatatcaataaactaaagaatagcaaataaatgcatatataataatgagacaaaga |
11415588 |
T |
|
| Q |
628 |
aatgtagtttaataaaaactatatataa |
655 |
Q |
| |
|
|| |||||||||| |||||||||||||| |
|
|
| T |
11415587 |
aacgtagtttaatgaaaactatatataa |
11415560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 598 - 677
Target Start/End: Original strand, 8847100 - 8847179
Alignment:
| Q |
598 |
ataaatgtatacggaagaatgagagtaagaaatgtagtttaataaaaactatatataactaagaagattgaacttactgg |
677 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||| ||||||||||||| ||||||| | | | |||||| |||||||||| |
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|
| T |
8847100 |
ataaatgtatacagaagaataagactaagaaatcaagtttaataaaaattatatatgatttaaaagattaaacttactgg |
8847179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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