View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_201 (Length: 260)
Name: NF9913A_low_201
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_201 |
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Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 4663153 - 4663191
Alignment:
| Q |
26 |
acacctttaatctgaagtagcaacattcaccacaacatg |
64 |
Q |
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| T |
4663153 |
acacctttaatctgaagtagcaacattcaccacaacatg |
4663191 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 4663267 - 4663313
Alignment:
| Q |
137 |
tttcaaagtcctaacccacccaccaaactgtttcccagcaaatcact |
183 |
Q |
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| T |
4663267 |
tttcaaagtcctaaaccacccaccaaactatttcccagcaaatcact |
4663313 |
T |
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