View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_207 (Length: 258)
Name: NF9913A_low_207
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_207 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 12287418 - 12287209
Alignment:
| Q |
34 |
tataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaa |
133 |
Q |
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| T |
12287418 |
tataataagcttaagtttagagattttgatttggaaagtgacgagaaagagggaaagaaaga--gagtgtaattggtgtgtagtttcagtgtatttgaaa |
12287321 |
T |
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| Q |
134 |
tttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtataacttgcggcacaaaacaattccttggatatatccgctaatacgctg |
233 |
Q |
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| T |
12287320 |
tttggtttgaaaaagcaaa-tatacgttttcgttgatgactttgactttgtataacttgcagcacaaaacaattccttggatatatccgctaatacgctg |
12287222 |
T |
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| Q |
234 |
tttggttgatatt |
246 |
Q |
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||||||||||||| |
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| T |
12287221 |
tttggttgatatt |
12287209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 12266835 - 12266684
Alignment:
| Q |
34 |
tataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaa |
133 |
Q |
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| T |
12266835 |
tataataagcttaaggtttgggattttgatatggaaagtgatgagaaagagggagagaaatac-gagtgtaattggtttgtggtttcaatgtaattgaaa |
12266737 |
T |
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| Q |
134 |
tttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtat |
186 |
Q |
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| T |
12266736 |
tttggtttgaaaaagcaaaatatacgttttcgttgaagactttgactttgtat |
12266684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 12282561 - 12282410
Alignment:
| Q |
34 |
tataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaa |
133 |
Q |
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| T |
12282561 |
tataataaggttaaggtttgggattttgatatggaaagtgatgagaaagagggagagaaatac-gagtgtaattggtttgtggtttcaatgtaattgaaa |
12282463 |
T |
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| Q |
134 |
tttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtat |
186 |
Q |
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| T |
12282462 |
tttggtttgaaaaagcaaaatatacgttttcgttgaagactttgactttgtat |
12282410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 12270734 - 12270659
Alignment:
| Q |
76 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
151 |
Q |
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| T |
12270734 |
gagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtatttgaattatgatttggaaaagcaa |
12270659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 12256725 - 12256650
Alignment:
| Q |
76 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
151 |
Q |
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| T |
12256725 |
gagaaaaaggggaagaaagaaagggtgtaattggttggttggttcaatgtatttggattttgatttgaaaaagcaa |
12256650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 12264117 - 12264042
Alignment:
| Q |
76 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
151 |
Q |
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| T |
12264117 |
gagaaaaaggggaagaaagaaagggtgtaattggttggttggttcaatgtatttggattttgatttgaaaaagcaa |
12264042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 29197540 - 29197446
Alignment:
| Q |
34 |
tataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtattt |
129 |
Q |
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| T |
29197540 |
tatattaagcttaagttttggg-ttttgatatggaaagtggtgagaaagagggaaagaaagaaagagtgtaattggtttgttgtttcggtgtattt |
29197446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 29197413 - 29197351
Alignment:
| Q |
182 |
tgtataacttgcggcacaaaacaattccttggatatatccgctaatacgctgtttggttgata |
244 |
Q |
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| T |
29197413 |
tgtattacttgcagcacaagacaattccgtggatatatccgctaatacgctgtttggttgata |
29197351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 9424478 - 9424443
Alignment:
| Q |
5 |
caaaaacaatagttagcttgagaggaaagtataata |
40 |
Q |
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| T |
9424478 |
caaaaacaatagttagcttgagaggaaagtataata |
9424443 |
T |
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