View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_212 (Length: 256)
Name: NF9913A_low_212
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_212 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 4921264 - 4921508
Alignment:
| Q |
6 |
atcaataaaccataaaaaccatacattagaatcagttttagcttagaaaatggtttgatacttacattttacccatgatgtcattttttcccaacgtgtt |
105 |
Q |
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| T |
4921264 |
atcaataaaccataaaaaccatacattagaatcagttttagcttagaaaatggtttgatacttacattttacccatgatgtcattttttcccaacgtgtg |
4921363 |
T |
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| Q |
106 |
tccgtcgttttgcttcttttcatgttttatgatgaaatgtaggcttgannnnnnngtacctcccttggttatcattggctatcaagcggaattcgtgtgg |
205 |
Q |
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| T |
4921364 |
tccgtcgttttgcttcttttcatgttttatgatgaaatgtaggcttgatttttttgtacttcccttggttatcattggctatcaagcggaattcgtgtgg |
4921463 |
T |
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| Q |
206 |
gaaatatgcttgcaaaatactcaaagcataaaagttcgtccaaga |
250 |
Q |
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| T |
4921464 |
gaaatatgcttgcaaaatactcaaagcgtagaagttcgtccaaga |
4921508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 4927510 - 4927750
Alignment:
| Q |
33 |
agaatcagttttagcttagaaaatggtttgatacttacattttacccatgatgtcatttttt-cccaacgtgtttccgtcgttttgcttctttt------ |
125 |
Q |
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| T |
4927510 |
agaatcagttttagcttagaaaatggtttgatacttacattttacccatgatgtcatttttttcccaacgtgtttccgtcgttttgcttcttttagttca |
4927609 |
T |
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| Q |
126 |
----------------catgttttatgatgaaatgtaggcttgannnnnnngtacctcccttggttatcattggctatcaagcggaattcgtgtgggaaa |
209 |
Q |
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| T |
4927610 |
ttttctaagaggcattcatgttttatgatgaaatgtaggcttgatttttttgtacttcccttggttatcattggctatcaagcggaattcgtgtgggaaa |
4927709 |
T |
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| Q |
210 |
tatgcttgcaaaatactcaaagcataaaagttcgtccaaga |
250 |
Q |
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| T |
4927710 |
tatgcttgcaaaatactcaaagcgtagaagttcgtccaaga |
4927750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 4904586 - 4904542
Alignment:
| Q |
203 |
tgggaaatatgcttgcaaaatactcaaagcataaaagttcgtcca |
247 |
Q |
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| T |
4904586 |
tgggaaatatgcctgtaaaatactcaaaccataaaagttcatcca |
4904542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 4908508 - 4908460
Alignment:
| Q |
202 |
gtgggaaatatgcttgcaaaatactcaaagcataaaagttcgtccaaga |
250 |
Q |
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| T |
4908508 |
gtgggaaatatgcttgtaaaatattcaaagcgtaaaagtccttccaaga |
4908460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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