View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_213 (Length: 256)

Name: NF9913A_low_213
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_213
NF9913A_low_213
[»] chr2 (12 HSPs)
chr2 (1-254)||(7252077-7252330)
chr2 (185-224)||(33455859-33455898)
chr2 (157-212)||(33456023-33456078)
chr2 (158-212)||(3008422-3008476)
chr2 (175-224)||(3185935-3185985)
chr2 (164-224)||(10571004-10571065)
chr2 (159-208)||(36159483-36159532)
chr2 (174-217)||(1872057-1872101)
chr2 (166-214)||(5137476-5137524)
chr2 (151-195)||(10542067-10542111)
chr2 (157-224)||(13210553-13210621)
chr2 (157-224)||(14466399-14466467)
[»] chr6 (12 HSPs)
chr6 (159-220)||(2115298-2115359)
chr6 (146-222)||(19385558-19385633)
chr6 (158-225)||(1206153-1206220)
chr6 (157-218)||(24745752-24745814)
chr6 (175-229)||(10145734-10145789)
chr6 (157-224)||(3680039-3680107)
chr6 (165-241)||(7349442-7349518)
chr6 (176-224)||(7938928-7938976)
chr6 (158-214)||(9592383-9592439)
chr6 (157-224)||(13353228-13353296)
chr6 (164-212)||(24836860-24836908)
chr6 (157-224)||(33796353-33796421)
[»] chr1 (27 HSPs)
chr1 (175-223)||(20738713-20738761)
chr1 (152-222)||(40571584-40571653)
chr1 (158-224)||(41590515-41590580)
chr1 (158-215)||(7525050-7525107)
chr1 (157-214)||(13031126-13031183)
chr1 (146-214)||(10663126-10663194)
chr1 (158-214)||(17557708-17557764)
chr1 (176-220)||(31626233-31626277)
chr1 (164-236)||(32344733-32344805)
chr1 (158-214)||(41590214-41590270)
chr1 (159-222)||(347107-347170)
chr1 (157-220)||(13978831-13978894)
chr1 (158-214)||(19609169-19609226)
chr1 (154-206)||(102074-102126)
chr1 (164-224)||(19810986-19811046)
chr1 (164-220)||(36470740-36470796)
chr1 (175-214)||(347351-347390)
chr1 (159-224)||(29265982-29266048)
chr1 (184-218)||(29410162-29410196)
chr1 (184-224)||(19609462-19609503)
chr1 (160-220)||(29038642-29038703)
chr1 (159-224)||(30339071-30339136)
chr1 (157-221)||(39007147-39007212)
chr1 (172-224)||(40566052-40566105)
chr1 (157-224)||(4098392-4098459)
chr1 (166-214)||(15686106-15686154)
chr1 (174-214)||(21641405-21641445)
[»] chr4 (28 HSPs)
chr4 (168-215)||(47434690-47434737)
chr4 (157-222)||(46676680-46676745)
chr4 (174-220)||(17912820-17912866)
chr4 (175-236)||(24001542-24001603)
chr4 (157-208)||(43760646-43760697)
chr4 (177-224)||(49190168-49190215)
chr4 (159-213)||(7567378-7567431)
chr4 (164-224)||(39778524-39778586)
chr4 (151-192)||(30686089-30686130)
chr4 (157-224)||(22445479-22445547)
chr4 (169-224)||(26030351-26030407)
chr4 (176-220)||(31965067-31965111)
chr4 (151-222)||(55253338-55253409)
chr4 (166-224)||(24232046-24232105)
chr4 (151-218)||(28469606-28469673)
chr4 (146-196)||(37130153-37130203)
chr4 (164-224)||(39778359-39778421)
chr4 (174-212)||(50830704-50830742)
chr4 (169-222)||(28491130-28491183)
chr4 (164-220)||(38452501-38452558)
chr4 (157-221)||(40827695-40827760)
chr4 (164-208)||(3180862-3180906)
chr4 (174-206)||(5220742-5220774)
chr4 (164-208)||(9077484-9077528)
chr4 (173-236)||(17111606-17111670)
chr4 (164-224)||(29782201-29782261)
chr4 (158-214)||(30490939-30490995)
chr4 (174-210)||(49824634-49824670)
[»] chr3 (19 HSPs)
chr3 (151-222)||(1348867-1348938)
chr3 (166-217)||(4212836-4212887)
chr3 (157-220)||(23898233-23898296)
chr3 (175-220)||(10450148-10450193)
chr3 (157-224)||(35018502-35018570)
chr3 (174-214)||(43955324-43955364)
chr3 (157-217)||(50187399-50187459)
chr3 (165-222)||(10485102-10485160)
chr3 (178-220)||(34363379-34363421)
chr3 (158-212)||(38036009-38036063)
chr3 (174-242)||(4155368-4155437)
chr3 (174-215)||(10694940-10694981)
chr3 (157-202)||(27086617-27086662)
chr3 (157-202)||(47702421-47702466)
chr3 (157-224)||(16926938-16927006)
chr3 (178-214)||(39225010-39225046)
chr3 (190-222)||(43955509-43955541)
chr3 (164-220)||(54861594-54861650)
chr3 (156-208)||(55256560-55256612)
[»] chr5 (16 HSPs)
chr5 (159-212)||(35708276-35708329)
chr5 (169-216)||(43433693-43433741)
chr5 (174-224)||(32337545-32337595)
chr5 (159-222)||(2986003-2986067)
chr5 (152-215)||(13638496-13638558)
chr5 (158-213)||(16275304-16275359)
chr5 (175-222)||(38069563-38069610)
chr5 (164-214)||(28120618-28120668)
chr5 (175-224)||(15844500-15844549)
chr5 (157-214)||(30366674-30366731)
chr5 (176-221)||(38815688-38815733)
chr5 (164-200)||(8397040-8397076)
chr5 (174-214)||(22198986-22199026)
chr5 (173-224)||(27560679-27560731)
chr5 (174-214)||(31973135-31973175)
chr5 (185-225)||(40261052-40261092)
[»] scaffold0072 (1 HSPs)
scaffold0072 (159-215)||(24461-24516)
[»] chr7 (12 HSPs)
chr7 (159-214)||(6427025-6427081)
chr7 (184-218)||(21048690-21048724)
chr7 (146-224)||(24965964-24966042)
chr7 (159-224)||(8983942-8984006)
chr7 (154-234)||(7971320-7971400)
chr7 (174-214)||(38963368-38963408)
chr7 (165-224)||(39079916-39079975)
chr7 (192-225)||(47856101-47856134)
chr7 (164-236)||(252541-252613)
chr7 (157-224)||(6782888-6782956)
chr7 (176-220)||(21033809-21033853)
chr7 (184-224)||(25000500-25000540)
[»] chr8 (15 HSPs)
chr8 (152-224)||(25972288-25972368)
chr8 (159-214)||(30014156-30014211)
chr8 (164-214)||(5692901-5692951)
chr8 (146-195)||(37825288-37825337)
chr8 (164-220)||(29053723-29053779)
chr8 (157-220)||(38475774-38475838)
chr8 (167-214)||(5671184-5671231)
chr8 (169-224)||(31197654-31197709)
chr8 (174-220)||(10368684-10368730)
chr8 (152-214)||(25972087-25972148)
chr8 (159-220)||(12970439-12970500)
chr8 (158-219)||(30014320-30014380)
chr8 (157-224)||(11232183-11232251)
chr8 (157-224)||(11232418-11232486)
chr8 (158-222)||(30590511-30590575)
[»] scaffold1034 (1 HSPs)
scaffold1034 (159-224)||(811-877)
[»] scaffold0048 (1 HSPs)
scaffold0048 (164-224)||(81876-81937)
[»] scaffold0519 (1 HSPs)
scaffold0519 (157-224)||(1943-2011)
[»] scaffold0092 (1 HSPs)
scaffold0092 (157-224)||(5682-5750)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7252077 - 7252330
Alignment:
Q  1 tcaatgtcatttccacatgcaaaccaagaaagtatatcgtaaaaaatcttagaaatgtattattatatccttaaactattgatgctgggttaatgttacc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7252077 tcaatgtcatttccacgtgcaaaccaagaaagtatatcgtaaaaactcttagaaatgtattattatatccttaaactattgatgctgggttaatgttacc 7252176  T
Q  101 agaaccctttttacctacatcaaattatgagtcctttattcctatgtggaagacattcctcatcttacaagttggttttgtagggttgagttaggctcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7252177 agaaccctttttacctacatcaaattatgagtcctttattcctatgtggaagacattcctcatcttacaagttggttttgtagggttgagttaggctcaa 7252276  T
Q  201 cccaaattctaagatggtatcagaatctgtccaagaatcattagaccagcccgc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7252277 cccaaattctaagatggtatcagaatctgtccaagaatcattagacccgcccgc 7252330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 33455859 - 33455898
Alignment:
Q  185 gttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  33455859 gttgagttagactcaacccaaattctaagatggtatcaga 33455898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 33456023 - 33456078
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaa 212  Q
    |||||| |||||||   ||||||||| ||||||||||||| |||||||||||||||    
T  33456023 tcctcaccttacaaaccggttttgtaaggttgagttaggcccaacccaaattctaa 33456078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 3008422 - 3008476
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaa 212  Q
    ||||| ||||||||   |||||||| ||||||||||||| |||||||||||||||    
T  3008422 cctcaccttacaagccagttttgtaaggttgagttaggcccaacccaaattctaa 3008476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 3185935 - 3185985
Alignment:
Q  175 gttttgtagg-gttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||||||| |||||||||| ||| ||||||||| |||||||||||||||    
T  3185935 gttttgtaggagttgagttagactcgacccaaattttaagatggtatcaga 3185985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 10571004 - 10571065
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    ||||||||  |||||||| |||||| ||||||||||||| | | ||||||||||||||||||    
T  10571004 cttacaagccggttttgtggggttgtgttaggctcaaccacgatttctaagatggtatcaga 10571065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 36159483 - 36159532
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaatt 208  Q
    |||| ||||||||| ||||||| |||| |||||||||||||||| |||||    
T  36159483 ctcaccttacaagtcggttttgcagggatgagttaggctcaacctaaatt 36159532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 1872057 - 1872101
Alignment:
Q  174 ggttttgtag-ggttgagttaggctcaacccaaattctaagatgg 217  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||||    
T  1872057 ggttttgtagcggtcgagttaggcccaacccaaattctaagatgg 1872101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 5137476 - 5137524
Alignment:
Q  166 tacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||| |||||||||| ||||||||| ||  |||||||||||||||||    
T  5137476 tacaagctggttttgtacggttgagtttggtccaacccaaattctaaga 5137524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 10542111 - 10542067
Alignment:
Q  151 agacattcctcatcttacaagttggttttgtagggttgagttagg 195  Q
    ||||| ||||||||||||||| |||||||||| || |||||||||    
T  10542111 agacactcctcatcttacaagctggttttgtaaggatgagttagg 10542067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 13210553 - 13210621
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| || ||| || |||||||| |||| | ||||||| ||||| ||||||||||||||||||||||    
T  13210553 tcctcacctcacaggtcggttttgtggggtcgtgttaggcccaaccacaaattctaagatggtatcaga 13210621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 14466467 - 14466399
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| ||||||||  |||||||| |||||| ||||||| ||||| | | ||||||||||||||||||    
T  14466467 tcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcaga 14466399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 2115298 - 2115359
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  2115298 ctcatcttataagttggtgttgtagggttgagttaggctcaaccaaaattctaagatggtat 2115359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 19385558 - 19385633
Alignment:
Q  146 gtggaagacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatca 222  Q
    |||| ||||||  |||| ||| |||| |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  19385558 gtgggagacatctctcacctttcaagctggttttgtatggttgagttaggctc-acccaaattctaagatggtatca 19385633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 1206220 - 1206153
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcagaa 225  Q
    ||||| |||||||| ||| |||||| || | |||||||  ||||||||||||||||||||||||||||    
T  1206220 cctcaccttacaagctggatttgtaaggctaagttaggtccaacccaaattctaagatggtatcagaa 1206153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 24745814 - 24745752
Alignment:
Q  157 tcctcatcttacaagttggttttgta-gggttgagttaggctcaacccaaattctaagatggt 218  Q
    |||||| ||||||||  ||||||| | |||||||||| |||||||||||||||||||||||||    
T  24745814 tcctcaccttacaagccggttttgaaagggttgagttcggctcaacccaaattctaagatggt 24745752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 10145789 - 10145734
Alignment:
Q  175 gttttgtagggttgagttaggctcaacc-caaattctaagatggtatcagaatctg 229  Q
    |||||||||||||| ||||||||||||| ||| |||||||||| ||||||| ||||    
T  10145789 gttttgtagggttgtgttaggctcaaccacaatttctaagatgatatcagagtctg 10145734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 3680039 - 3680107
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    ||||| ||| |||||| | |||||| |||||| ||||||| ||||| ||| ||||||||||||||||||    
T  3680039 tcctcctctcacaagtcgattttgtggggttgtgttaggcccaaccacaatttctaagatggtatcaga 3680107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 7349442 - 7349518
Alignment:
Q  165 ttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcagaatctgtccaagaatcat 241  Q
    ||||||||  ||| |||||||||||| ||||| | | |||||||||||| ||||||| || ||| ||||||| ||||    
T  7349442 ttacaagtcagttctgtagggttgaggtaggcccgatccaaattctaagttggtatccgagtctatccaagattcat 7349518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 7938976 - 7938928
Alignment:
Q  176 ttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||||||||||||||||||  |||||||||| ||||||  |||||||    
T  7938976 ttttgtagggttgagttaggccaaacccaaattttaagattctatcaga 7938928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 9592439 - 9592383
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||||||||||||  |||||| || |||||||| |||| || ||||||||||||||    
T  9592439 cctcatcttacaagccggttttctaaggttgagtcaggcccatcccaaattctaaga 9592383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 13353228 - 13353296
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| ||||||||  |||||||| |||||| ||||||| ||||| | | ||||||||||||||||||    
T  13353228 tcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcaga 13353296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 24836908 - 24836860
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaa 212  Q
    |||||||||  |||||||| ||||| |||||| ||||||||||||||||    
T  24836908 cttacaagtctgttttgtatggttgggttaggttcaacccaaattctaa 24836860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 33796353 - 33796421
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| ||||||||  |||||||| |||||| ||||||| ||||| | | ||||||||||||||||||    
T  33796353 tcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcaga 33796421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 20738761 - 20738713
Alignment:
Q  175 gttttgtagggttgagttaggctcaacccaaattctaagatggtatcag 223  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20738761 gttttgtagggttgagttaggctcatcccaaattctaagatggtatcag 20738713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 40571584 - 40571653
Alignment:
Q  152 gacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatca 222  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  40571584 gacaatcctcaccttacaagttggttttgtaaggttgagttaggcccaatccaaatt-taagatggtatca 40571653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 41590580 - 41590515
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    ||||||||||||||  ||||| ||| ||||||||||||| |||||||||||||||||||||||||||    
T  41590580 cctcatcttacaagccggtttcgtaaggttgagttaggc-caacccaaattctaagatggtatcaga 41590515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 7525050 - 7525107
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagat 215  Q
    ||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||    
T  7525050 cctcaccttacaagctggttttgtaaggttgagttaggctcaatccaaattctaagat 7525107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 13031183 - 13031126
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||| |||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  13031183 tcctcaccttacaaactggttttgtagggttgagttaggtccaacccaaattctaaga 13031126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 10663126 - 10663194
Alignment:
Q  146 gtggaagacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||| ||||||| |||| ||||||||||||||||||||| |||  |||||  |||||||||||||||||    
T  10663126 gtgggagacatttctcaccttacaagttggttttgtaggattgcattaggtccaacccaaattctaaga 10663194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 17557764 - 17557708
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||| |||||||| || ||||||| ||||||||||||| |||||||||||||||||    
T  17557764 cctcaccttacaagctgattttgtaaggttgagttaggcccaacccaaattctaaga 17557708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 31626277 - 31626233
Alignment:
Q  176 ttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  31626277 ttttgtagggttgagttaggtccaacccaaattctaagatggtat 31626233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 32344805 - 32344733
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcagaatctgtccaaga 236  Q
    |||||||| || |||| ||||||||||||||| ||||||||| || ||||||||||| ||| ||| |||||||    
T  32344805 cttacaagctgattttttagggttgagttaggttcaacccaatttttaagatggtataagagtctatccaaga 32344733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 41590270 - 41590214
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||||||||||| |||||||||| ||||||||| ||| ||||| |||||||||||    
T  41590270 cctcatcttacaagctggttttgtaaggttgagtttggcccaacctaaattctaaga 41590214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 347107 - 347170
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatca 222  Q
    |||| |||||||| |||||||||| ||||||||||||  ||||||||||||||| ||| |||||    
T  347107 ctcaccttacaagctggttttgtaaggttgagttagggccaacccaaattctaatatgttatca 347170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 13978831 - 13978894
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    |||||| |||||||||  |||||||| |||| |||||||| |||||||||||| ||||||||||    
T  13978831 tcctcaccttacaagtcagttttgtaaggttaagttaggcacaacccaaattcaaagatggtat 13978894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 19609226 - 19609169
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaaccc-aaattctaaga 214  Q
    ||||| ||||||||  ||||||||| |||||||||||||||||||| |||||||||||    
T  19609226 cctcaccttacaagccggttttgtaaggttgagttaggctcaacccaaaattctaaga 19609169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 102126 - 102074
Alignment:
Q  154 cattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaa 206  Q
    ||||||||| ||||||||  |||||||||||||||||||||||| || |||||    
T  102126 cattcctcaccttacaagccggttttgtagggttgagttaggctaaatccaaa 102074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 19811046 - 19810986
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    ||||||||  ||||||||| |||||| ||||||  |||||||||| |||||||||||||||    
T  19811046 cttacaagccggttttgtaaggttgacttaggccgaacccaaattttaagatggtatcaga 19810986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 36470796 - 36470740
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    |||| ||||||||||| ||||||||||||||| | ||||  ||||||||||||||||    
T  36470796 cttataagttggttttatagggttgagttaggttaaacctgaattctaagatggtat 36470740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 347351 - 347390
Alignment:
Q  175 gttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  347351 gttttgtaaggttgagttaggttcaacccaaattctaaga 347390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 29265982 - 29266048
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||| |||||||| ||||||||| |||||| ||||||| ||||| | | ||||||||||||||||||    
T  29265982 ctcaccttacaagctggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcaga 29266048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 29410196 - 29410162
Alignment:
Q  184 ggttgagttaggctcaacccaaattctaagatggt 218  Q
    |||||||||||||| ||||||||||||||||||||    
T  29410196 ggttgagttaggctgaacccaaattctaagatggt 29410162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 19609503 - 19609462
Alignment:
Q  184 ggttgagttaggctcaaccc-aaattctaagatggtatcaga 224  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  19609503 ggttgagttaggcacaacccgaaattctaagatggtatcaga 19609462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 29038642 - 29038703
Alignment:
Q  160 tcatcttacaagttggttttgtaggg-ttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||||||||||   ||||||||||| |||||| |||| ||| |||||||||||||||||||    
T  29038642 tcatcttacaagccagttttgtaggggttgagtgaggcccaatccaaattctaagatggtat 29038703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 30339136 - 30339071
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||||||||| ||| || |||||| ||||||||| ||||||| ||||| ||| ||| |||||||    
T  30339136 ctcatcttacaaattgattctgtaggattgagttagactcaacctaaattttaatatgttatcaga 30339071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 39007147 - 39007212
Alignment:
Q  157 tcctcatcttacaagttggttttgtagg-gttgagttaggctcaacccaaattctaagatggtatc 221  Q
    ||||||||||||| | ||||||||||   |||||||||||  | ||||||||||||||||||||||    
T  39007147 tcctcatcttacatgctggttttgtaaatgttgagttaggacctacccaaattctaagatggtatc 39007212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 40566105 - 40566052
Alignment:
Q  172 ttggttttgtagggttgagttaggctcaacccaaa-ttctaagatggtatcaga 224  Q
    ||||||||||| ||||| |||| || ||||||||| ||||||||||||||||||    
T  40566105 ttggttttgtaaggttgggttatgcccaacccaaaattctaagatggtatcaga 40566052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 4098459 - 4098392
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| |||||||||||||||||| |||||| ||||||| ||||| | | ||||||| ||||||||||    
T  4098459 tcctcaccttacaagttggttttgt-gggttgtgttaggcccaaccacgatttctaagttggtatcaga 4098392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 15686154 - 15686106
Alignment:
Q  166 tacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||||| ||||||||||||||||||| |||  |||||| |||||||||    
T  15686154 tacaagtcggttttgtagggttgagttgggcctaacccatattctaaga 15686106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 21641445 - 21641405
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||||||| ||||||||||||| ||||||||||| |||||    
T  21641445 ggttttgtaaggttgagttaggcccaacccaaattttaaga 21641405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 47434690 - 47434737
Alignment:
Q  168 caagttggttttgtagggttgagttaggctcaacccaaattctaagat 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  47434690 caagttggttttgtagggttgagttaggttcaacccaaattctaagat 47434737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 46676680 - 46676745
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatca 222  Q
    |||||| |||||||| |||||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  46676680 tcctcaccttacaagatggttttgtagggttgagttaggtccaacccaaattttaagatgatatca 46676745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 17912820 - 17912866
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  17912820 ggttttgtagggttgagttaggcccaacccaaattttaagatggtat 17912866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 24001542 - 24001603
Alignment:
Q  175 gttttgtagggttgagttaggctcaacccaaattctaagatggtatcagaatctgtccaaga 236  Q
    |||||||| |||||||||| || |||||||||||||||||| |||||||| ||| |||||||    
T  24001542 gttttgtaaggttgagttaagcccaacccaaattctaagatagtatcagagtctatccaaga 24001603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 43760646 - 43760697
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaatt 208  Q
    |||||| |||| |||||||| ||||||||||||||||| |||||||||||||    
T  43760646 tcctcaccttataagttggtattgtagggttgagttagactcaacccaaatt 43760697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 49190215 - 49190168
Alignment:
Q  177 tttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||| | ||||||| |||||||||||||||||||||||||||||||    
T  49190215 tttgtaagattgagtttggctcaacccaaattctaagatggtatcaga 49190168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 7567378 - 7567431
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaag 213  Q
    |||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  7567378 ctcaccttacaagttggttttgaagggttgaattaggc-caacccaaattctaag 7567431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 39778586 - 39778524
Alignment:
Q  164 cttacaagttggttttgta-gggttgagttaggctcaaccc-aaattctaagatggtatcaga 224  Q
    ||||||||||||||||| | |||| |||||||||||||||| ||||| |||||||||||||||    
T  39778586 cttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaagatggtatcaga 39778524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 30686089 - 30686130
Alignment:
Q  151 agacattcctcatcttacaagttggttttgtagggttgagtt 192  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  30686089 agacattcctcatgttacaagatggttttgtagggttgagtt 30686130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 22445479 - 22445547
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| | ||||||| |||||||| |||||| ||||| | ||||| ||||||||||||||||||||||    
T  22445479 tcctcaccctacaagtcggttttgtggggttgtgttagacccaaccacaaattctaagatggtatcaga 22445547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 26030351 - 26030407
Alignment:
Q  169 aagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| |||||||||||||||||| | |||||| ||| ||||||||||||||||||    
T  26030351 aagttgattttgtagggttgagttaagttcaaccacaatttctaagatggtatcaga 26030407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 31965111 - 31965067
Alignment:
Q  176 ttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||||| |||||||||||||||||| |||||||||| |||||||    
T  31965111 ttttgtaaggttgagttaggctcaactcaaattctaatatggtat 31965067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 55253338 - 55253409
Alignment:
Q  151 agacattcctcatcttacaagttggttttgtagggttgagttaggctcaa-cccaaattctaagatggtatca 222  Q
    ||||| |||||| ||||||||| ||||||||| |||||||||| |||||| || ||||||||| |||||||||    
T  55253338 agacagtcctcaccttacaagtcggttttgtaaggttgagtta-gctcaagccaaaattctaatatggtatca 55253409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 24232105 - 24232046
Alignment:
Q  166 tacaagttggttttgta-gggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    ||||||| ||||||||| |||||||||||||| ||||| |||||||| ||||| ||||||    
T  24232105 tacaagtcggttttgtaagggttgagttaggcccaacctaaattctatgatggcatcaga 24232046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 28469606 - 28469673
Alignment:
Q  151 agacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggt 218  Q
    |||||||| |||| ||||||| |||||||||||||||||||| |||  ||| |||||| || ||||||    
T  28469606 agacattcgtcatgttacaagatggttttgtagggttgagtttggccaaacacaaattataggatggt 28469673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 37130203 - 37130153
Alignment:
Q  146 gtggaagacattcctcatcttacaagttggttttgtagggttgagttaggc 196  Q
    |||||||| || ||||||||||||||  |||||||||||||||| ||||||    
T  37130203 gtggaagatatccctcatcttacaagccggttttgtagggttgacttaggc 37130153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 39778421 - 39778359
Alignment:
Q  164 cttacaagttggttttgta-gggttgagttaggctcaaccc-aaattctaagatggtatcaga 224  Q
    |||||||| |||||||||| |||||||||||||| |||||| ||||| |||| ||||||||||    
T  39778421 cttacaagctggttttgtaagggttgagttaggcccaacccaaaattttaagctggtatcaga 39778359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 50830742 - 50830704
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaa 212  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  50830742 ggttttgtaaggttgagttaggcccaacccaaattctaa 50830704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 28491130 - 28491183
Alignment:
Q  169 aagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatca 222  Q
    |||| |||||||| | ||||||||||||| || |||||||||||||| ||||||    
T  28491130 aagtcggttttgtggagttgagttaggcttaatccaaattctaagatagtatca 28491183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 38452558 - 38452501
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctc-aacccaaattctaagatggtat 220  Q
    |||||||||||||||||| || ||||||||| | | || |||||||||||||||||||    
T  38452558 cttacaagttggttttgtgggattgagttagaccctaagccaaattctaagatggtat 38452501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 40827760 - 40827695
Alignment:
Q  157 tcctcatcttacaagttggttttgta-gggttgagttaggctcaacccaaattctaagatggtatc 221  Q
    |||||| |||||||| || ||||||| ||||| |||||||||| ||| ||||| ||||||||||||    
T  40827760 tcctcaccttacaagctgattttgtaagggttaagttaggctcgacctaaattttaagatggtatc 40827695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 3180906 - 3180862
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaatt 208  Q
    ||||||| |||||||||||| |||||||||||| ||||| |||||    
T  3180906 cttacaatttggttttgtagagttgagttaggcccaaccaaaatt 3180862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 5220742 - 5220774
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaa 206  Q
    ||||||||||||||||||||||||| |||||||    
T  5220742 ggttttgtagggttgagttaggctccacccaaa 5220774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 9077528 - 9077484
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaatt 208  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||    
T  9077528 cttacaagtcggttttgtagggttaaattaggctcaaccaaaatt 9077484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 17111606 - 17111670
Alignment:
Q  173 tggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcagaatctgtccaaga 236  Q
    ||||||||| |||||| ||||||| ||||| | | |||||||||||||||||| ||| |||||||    
T  17111606 tggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagtctttccaaga 17111670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 29782201 - 29782261
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    ||||||||||| ||||||||| || ||||||||| || ||||||| | ||||| |||||||    
T  29782201 cttacaagttgattttgtaggatttagttaggctaaatccaaattattagatgatatcaga 29782261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 30490995 - 30490939
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||| ||||||||  | ||| ||| ||||||||||||| |||||||||||||||||    
T  30490995 cctcaccttacaagccgttttcgtaaggttgagttaggcccaacccaaattctaaga 30490939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 49824634 - 49824670
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattct 210  Q
    |||||||||||||||||||||||  ||||||||||||    
T  49824634 ggttttgtagggttgagttaggccaaacccaaattct 49824670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 1348938 - 1348867
Alignment:
Q  151 agacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatca 222  Q
    ||||||||||||||| |||| | ||||||||| ||||||||||| ||||||||||||| ||||||| |||||    
T  1348938 agacattcctcatctcacaaatcggttttgtatggttgagttagactcaacccaaattttaagatgatatca 1348867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 4212836 - 4212887
Alignment:
Q  166 tacaagttggttttgtagggttgagttaggctcaacccaaattctaagatgg 217  Q
    ||||||| |||||||||||||||| ||||||||||||||| || ||||||||    
T  4212836 tacaagtcggttttgtagggttgaattaggctcaacccaatttttaagatgg 4212887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 23898233 - 23898296
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    |||||| ||||| |||||||||| | ||||| ||||||||  ||||||||||||||||||||||    
T  23898233 tcctcaccttaccagttggttttatggggttaagttaggcctaacccaaattctaagatggtat 23898296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 10450148 - 10450193
Alignment:
Q  175 gttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||    
T  10450148 gttttatagggttgagttaggcaaaacccaaattctaagatggtat 10450193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 35018502 - 35018570
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| |||||||| ||| |||||| ||| ||||||||| ||||| |||||||||||||| |||||||    
T  35018502 tcctcaccttacaagctgggtttgtaaggtcgagttaggcccaaccacaaattctaagatgatatcaga 35018570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 43955364 - 43955324
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  43955364 ggttttataaggttgagttaggctcaacccaaattctaaga 43955324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 50187459 - 50187399
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatgg 217  Q
    |||||| |||||||||  |||| ||| ||||||||||||| |||| |||||||||||||||    
T  50187459 tcctcaccttacaagtcagtttagtaaggttgagttaggcccaactcaaattctaagatgg 50187399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 10485102 - 10485160
Alignment:
Q  165 ttacaagttggttttgtagggtt-gagttaggctcaacccaaattctaagatggtatca 222  Q
    ||||||||  ||||||||||||| |||||||||  |||||||||||||| |||||||||    
T  10485102 ttacaagtcagttttgtagggtttgagttaggcctaacccaaattctaatatggtatca 10485160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 34363421 - 34363379
Alignment:
Q  178 ttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||    
T  34363421 ttgtagggttgagttagtctcaaccaaaattttaagatggtat 34363379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 38036063 - 38036009
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaa 212  Q
    ||||| ||||||||| |||||||||  ||||||||| | ||||||||||||||||    
T  38036063 cctcaccttacaagtcggttttgtaaagttgagttaagttcaacccaaattctaa 38036009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 4155368 - 4155437
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcagaatctgtccaagaatcatt 242  Q
    |||||||| |||||| ||||||| ||||| | | |||||||||||||||||| ||| ||||||| |||||    
T  4155368 ggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagtctctccaagattcatt 4155437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 10694940 - 10694981
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaagat 215  Q
    ||||||||||| |||||||||| |||| ||||||||||||||    
T  10694940 ggttttgtaggattgagttaggttcaatccaaattctaagat 10694981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 27086617 - 27086662
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc 202  Q
    ||||||||||||||||||||||||| | |||| ||||||| |||||    
T  27086617 tcctcatcttacaagttggttttgtggagttgtgttaggcccaacc 27086662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 47702466 - 47702421
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc 202  Q
    ||||||||||||||| ||||||||| |||||| ||||||| |||||    
T  47702466 tcctcatcttacaagctggttttgtggggttgtgttaggcccaacc 47702421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 16927006 - 16926938
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    ||||||||| |||||  |||||||| |||||| |||| |||||||| | | ||||||||||||||||||    
T  16927006 tcctcatctcacaagccggttttgtggggttgtgttaagctcaaccacgatttctaagatggtatcaga 16926938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 39225046 - 39225010
Alignment:
Q  178 ttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  39225046 ttgtaaggttgagttaggcccaacccaaattctaaga 39225010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 43955541 - 43955509
Alignment:
Q  190 gttaggctcaacccaaattctaagatggtatca 222  Q
    |||||||||||||||||||||||| ||||||||    
T  43955541 gttaggctcaacccaaattctaagttggtatca 43955509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 54861594 - 54861650
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    |||||||| | |||||||  |||||||||| || ||||||||||| |||||||||||    
T  54861594 cttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtat 54861650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 55256560 - 55256612
Alignment:
Q  156 ttcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaatt 208  Q
    ||||||| ||||||||||||||||||||| ||||||| |   |||||||||||    
T  55256560 ttcctcaccttacaagttggttttgtaggcttgagtttgttccaacccaaatt 55256612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 35708329 - 35708276
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaa 212  Q
    ||||||||||||||||||||||| |||||||||||| | | |||||||||||||    
T  35708329 ctcatcttacaagttggttttgttgggttgagttagacccgacccaaattctaa 35708276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 43433741 - 43433693
Alignment:
Q  169 aagttggttttgtaggg-ttgagttaggctcaacccaaattctaagatg 216  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  43433741 aagttggttttgtaggggttgagttaggcccaacccaaattctaagatg 43433693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 32337545 - 32337595
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||||||||||||  |||||| ||||||||||||||| |||||||||||    
T  32337545 ggttttgtagggttgtattaggcccaacccaaattctaatatggtatcaga 32337595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 2986067 - 2986003
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatca 222  Q
    |||| |||||||||||| ||||| |||||| ||||||||||||| | | ||||||||||||||||    
T  2986067 ctcaccttacaagttggatttgtggggttgtgttaggctcaaccaccatttctaagatggtatca 2986003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 13638558 - 13638496
Alignment:
Q  152 gacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagat 215  Q
    |||| |||||||||||||||| |||||||||||||||||||||   ||||| ||||| ||||||    
T  13638558 gacaatcctcatcttacaagt-ggttttgtagggttgagttagttccaaccaaaattttaagat 13638496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 16275304 - 16275359
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaag 213  Q
    ||||| |||||||| |||||||||| ||||||||||| | || |||||||||||||    
T  16275304 cctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 16275359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 38069610 - 38069563
Alignment:
Q  175 gttttgtagggttgagttaggctcaacccaaattctaagatggtatca 222  Q
    ||||| || ||||||||||||| ||||||||||||||| |||||||||    
T  38069610 gttttataaggttgagttaggcccaacccaaattctaatatggtatca 38069563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 28120618 - 28120668
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||||  ||||||||| ||| |||||||||||||||||||||| |||||    
T  28120618 cttacaatctggttttgttgggatgagttaggctcaacccaaattataaga 28120668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 15844549 - 15844500
Alignment:
Q  175 gttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||||| | ||||||||||| ||||||||||| ||||||||| |||||    
T  15844549 gttttgtaagattgagttaggcccaacccaaattttaagatggtgtcaga 15844500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 30366674 - 30366731
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||| ||||||||  || |||||| ||||||||||||| ||| |||||||||||||    
T  30366674 tcctcaccttacaagccggctttgtaaggttgagttaggcccaaaccaaattctaaga 30366731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 38815733 - 38815688
Alignment:
Q  176 ttttgtagggttgagttaggctcaacccaaattctaagatggtatc 221  Q
    |||||||||||||| |||| ||||||||||| ||||||||| ||||    
T  38815733 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 38815688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 8397040 - 8397076
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaa 200  Q
    ||||||||  |||||||||||||||||||||||||||    
T  8397040 cttacaagccggttttgtagggttgagttaggctcaa 8397076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 22199026 - 22198986
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||||||| ||||||||||||| ||||||||||| |||||    
T  22199026 ggttttgtaaggttgagttaggcccaacccaaattttaaga 22198986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 27560731 - 27560679
Alignment:
Q  173 tggttttgta-gggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||||||| ||||  |||||||||| |||| ||||||||||||||||||||    
T  27560731 tggttttgtaagggtaaagttaggctcgacccgaattctaagatggtatcaga 27560679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 31973175 - 31973135
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||||||| |||| |||||||| |||||||||||||||||    
T  31973175 ggttttgtaaggttcagttaggcccaacccaaattctaaga 31973135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 40261092 - 40261052
Alignment:
Q  185 gttgagttaggctcaacccaaattctaagatggtatcagaa 225  Q
    ||||| |||||| ||||||||||||||| ||||||||||||    
T  40261092 gttgaattaggcccaacccaaattctaatatggtatcagaa 40261052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 24516 - 24461
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagat 215  Q
    ||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||    
T  24516 ctcatcttacaagctggttttgtatggt-gagttaggctcaacacaaattctaagat 24461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 6427081 - 6427025
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaaccc-aaattctaaga 214  Q
    |||| ||||||||||||||||||| | |||||||||||||||||| |||||||||||    
T  6427081 ctcaccttacaagttggttttgtaagattgagttaggctcaacccaaaattctaaga 6427025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 21048724 - 21048690
Alignment:
Q  184 ggttgagttaggctcaacccaaattctaagatggt 218  Q
    |||||||||||||||||||||||||||||||||||    
T  21048724 ggttgagttaggctcaacccaaattctaagatggt 21048690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 24966042 - 24965964
Alignment:
Q  146 gtggaagacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||| ||||||  |||| |||||| |||||||||||||||||||||| ||  ||||||||||| | |||| ||||||||    
T  24966042 gtgggagacatctctcaccttacacgttggttttgtagggttgagttgggtccaacccaaattttgagatagtatcaga 24965964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 8984006 - 8983942
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||| ||||||||||||||||  |||||||| |||| | ||||||||||||||||| |||||||||    
T  8984006 ctcaccttacaagttggtttttaagggttgaattagtc-caacccaaattctaagaaggtatcaga 8983942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 7971320 - 7971400
Alignment:
Q  154 cattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcagaatctgtccaa 234  Q
    ||||| ||| |||||||||  ||||||||  ||||||||||| ||||| ||||| |||||||  ||||||||||| |||||    
T  7971320 cattcgtcaccttacaagtcagttttgtaaagttgagttaggttcaacacaaatcctaagatattatcagaatctatccaa 7971400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 38963408 - 38963368
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  38963408 ggtttggtaaggttgagttaggctcaacccaaattctaaga 38963368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 39079975 - 39079916
Alignment:
Q  165 ttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||||||  ||||||||| |||| |||||||| ||||||||||| |||||||| ||||||    
T  39079975 ttacaagccggttttgtaaggtttagttaggcccaacccaaattttaagatggcatcaga 39079916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 47856101 - 47856134
Alignment:
Q  192 taggctcaacccaaattctaagatggtatcagaa 225  Q
    |||||||||||||||||||||||||||| |||||    
T  47856101 taggctcaacccaaattctaagatggtaacagaa 47856134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 252541 - 252613
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcagaatctgtccaaga 236  Q
    |||||||| ||| | ||||| |||||||||||| ||| ||||||||||||| ||||  ||| ||| |||||||    
T  252541 cttacaagctggctatgtagagttgagttaggcccaatccaaattctaagagggtactagagtctatccaaga 252613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 6782888 - 6782956
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| ||||||||  |||||||| |||||| ||||||||||||| | | |||||| |||||||||||    
T  6782888 tcctcaccttacaagccggttttgtggggttgtgttaggctcaaccacgatttctaacatggtatcaga 6782956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 21033853 - 21033809
Alignment:
Q  176 ttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||||| ||||||||||||||||||  |||||||||| ||||||    
T  21033853 ttttgtaaggttgagttaggctcaactgaaattctaagttggtat 21033809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 25000500 - 25000540
Alignment:
Q  184 ggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  25000500 ggttgagttaaactcaaccaaaattctaagatggtatcaga 25000540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 25972368 - 25972288
Alignment:
Q  152 gacattcctcatcttacaagttggttttgtagggttgagttag--------gctcaacccaaattctaagatggtatcaga 224  Q
    ||||||||||| ||||||||  |||||||||||||||||||||        || |||||||||||||||||||||||||||    
T  25972368 gacattcctcaccttacaagcaggttttgtagggttgagttaggcccaactgcacaacccaaattctaagatggtatcaga 25972288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 30014211 - 30014156
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||||||||||| ||||||||||||||||||||| | ||||| ||||| |||||    
T  30014211 ctcatcttacaagtcggttttgtagggttgagttagacccaacctaaattttaaga 30014156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 5692951 - 5692901
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||| |||||    
T  5692951 cttacaagttagttttgtagggttgagttaagcttaacccaaattttaaga 5692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 37825288 - 37825337
Alignment:
Q  146 gtggaagacattcctcatcttacaagttggttttgtagggttgagttagg 195  Q
    |||| |||||||| ||| ||||||||||||||||||| ||||||||||||    
T  37825288 gtgggagacattcttcaccttacaagttggttttgtacggttgagttagg 37825337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 29053779 - 29053723
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    |||||||||| |||||||| ||||||||||   |||||| |||||||||||||||||    
T  29053779 cttacaagttagttttgtaaggttgagttaaattcaaccgaaattctaagatggtat 29053723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 38475774 - 38475838
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtat 220  Q
    |||||| || |||||  ||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  38475774 tcctcacctcacaagccggttttgtagggttgtgttaggcccaaccacaaattctaagatggtat 38475838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 5671231 - 5671184
Alignment:
Q  167 acaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    ||||||| ||||||||||||||||||| ||| |||| |||||||||||    
T  5671231 acaagttagttttgtagggttgagttaagcttaacctaaattctaaga 5671184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 31197654 - 31197709
Alignment:
Q  169 aagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    |||| ||||||||||||||| ||||||| |||||  | ||||||||||||||||||    
T  31197654 aagtcggttttgtagggttgtgttaggcccaaccagatttctaagatggtatcaga 31197709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 10368684 - 10368730
Alignment:
Q  174 ggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    ||||||||||||||||||||| | ||||||||||| |||||| ||||    
T  10368684 ggttttgtagggttgagttagtcccaacccaaattttaagatagtat 10368730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 25972148 - 25972087
Alignment:
Q  152 gacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaaga 214  Q
    |||| ||||||| | ||||| |||||||||||||||||| ||||| |||||||| ||||||||    
T  25972148 gacactcctcatttcacaagctggttttgtagggttgagctaggc-caacccaagttctaaga 25972087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 12970500 - 12970439
Alignment:
Q  159 ctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtat 220  Q
    |||| |||||||| || ||||| |||||| ||||| || ||| |||||||||||||||||||    
T  12970500 ctcaccttacaagctgattttgcagggtttagttaagcacaatccaaattctaagatggtat 12970439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 30014380 - 30014320
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggta 219  Q
    ||||| |||||||  |||||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  30014380 cctcaccttacaacctggtttcgtaaggttgagttag-ctcaacccaaattttaagatggta 30014320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 11232251 - 11232183
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| ||||||||  |||||||| |||||| ||||||| ||||| | | ||||||||||||||||||    
T  11232251 tcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcaga 11232183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 11232486 - 11232418
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| ||||||||  |||||||| |||||| ||||||| ||||| | | ||||||||||||||||||    
T  11232486 tcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcaga 11232418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 30590511 - 30590575
Alignment:
Q  158 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatca 222  Q
    ||||| ||||||||  ||||||||| |||||| ||||||  | |||||||||||| |||||||||    
T  30590511 cctcaccttacaagccggttttgtaaggttgacttaggcctagcccaaattctaatatggtatca 30590575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 811 - 877
Alignment:
Q  159 ctcatcttacaagttggttttgta-gggttgagttaggctcaacccaaattctaagatggtatcaga 224  Q
    ||||||||||||| || ||||||| ||||||| ||||||  ||| |||||||||||||| |||||||    
T  811 ctcatcttacaagctgattttgtaagggttgaattaggcctaactcaaattctaagatgatatcaga 877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 81876 - 81937
Alignment:
Q  164 cttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    ||||||||| |||||||| |||||| ||||||| ||||| | | ||||||||||||||||||    
T  81876 cttacaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcaga 81937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 1943 - 2011
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||| ||||||||  |||||||| |||||| ||||||| ||||| | | ||||||||||||||||||    
T  1943 tcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcaga 2011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 5682 - 5750
Alignment:
Q  157 tcctcatcttacaagttggttttgtagggttgagttaggctcaacc-caaattctaagatggtatcaga 224  Q
    |||||||||||||||  |||||||| |||||| ||||| | ||||| | | ||||||||||||||||||    
T  5682 tcctcatcttacaagccggttttgtggggttgtgttagacccaaccacgatttctaagatggtatcaga 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University