View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_219 (Length: 254)
Name: NF9913A_low_219
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_219 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 29222618 - 29222829
Alignment:
| Q |
25 |
aattctcaaacaaaaaactatgagctaaaaacgactagccaagtaagctctcaactccaaaactccattaaaacaccaagcca-------aggagatatg |
117 |
Q |
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| T |
29222618 |
aattctcaaacaaaaaacaacgagctaaaaatggctagccaagtaagctcccaactccaaaactttaataaa-caccaagccattttagaaggagatatg |
29222716 |
T |
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| Q |
118 |
taatttgatcaatggtttttaaaataatttaaaggacaaccaaatacaaagaaatggttg-tacaaatataatttctcttctaaaaagatagagatagct |
216 |
Q |
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| T |
29222717 |
ttatttgatcaatcatttttaaaataatttaaaggacaactaaatacatacaaataaatgatacatatatcatttctcttctaaaaagacaaagatagct |
29222816 |
T |
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| Q |
217 |
agaacaaactacc |
229 |
Q |
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| T |
29222817 |
aaaacaaactacc |
29222829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 29226702 - 29226774
Alignment:
| Q |
157 |
ccaaatacaaagaaatggttgtacaaatataatttctcttctaaaaagatagagatagctagaacaaactacc |
229 |
Q |
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| T |
29226702 |
ccaaatacaaagaaatggttgtacaaatatgatttctcttctaaaaagacagagatagctagaacaaactacc |
29226774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 305018 - 305052
Alignment:
| Q |
169 |
aaatggttgtacaaatataatttctcttctaaaaa |
203 |
Q |
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| T |
305018 |
aaatggttgtacaaatataatttctcttctcaaaa |
305052 |
T |
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