View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_22 (Length: 453)

Name: NF9913A_low_22
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_22
NF9913A_low_22
[»] scaffold0085 (1 HSPs)
scaffold0085 (41-442)||(38176-38569)
[»] chr7 (26 HSPs)
chr7 (50-428)||(43539740-43540117)
chr7 (268-407)||(15843730-15843867)
chr7 (268-407)||(15860839-15860976)
chr7 (58-428)||(3817346-3817707)
chr7 (64-428)||(28421000-28421355)
chr7 (58-428)||(3811204-3811565)
chr7 (268-368)||(5979413-5979510)
chr7 (65-181)||(20238955-20239068)
chr7 (58-148)||(339404-339495)
chr7 (269-428)||(351550-351706)
chr7 (268-320)||(20238819-20238871)
chr7 (269-320)||(339248-339299)
chr7 (58-148)||(351819-351910)
chr7 (268-320)||(5849398-5849450)
chr7 (64-181)||(35148045-35148160)
chr7 (268-320)||(35148248-35148300)
chr7 (268-428)||(18656892-18657047)
chr7 (58-148)||(42767330-42767421)
chr7 (102-204)||(26383607-26383706)
chr7 (67-135)||(22741969-22742038)
chr7 (276-320)||(22742176-22742220)
chr7 (276-320)||(35150788-35150832)
chr7 (376-428)||(35152873-35152925)
chr7 (58-148)||(12804033-12804124)
chr7 (268-320)||(26380952-26381004)
chr7 (376-428)||(26383432-26383484)
[»] chr3 (31 HSPs)
chr3 (64-428)||(38455591-38455947)
chr3 (58-428)||(10244369-10244731)
chr3 (58-428)||(11839760-11840122)
chr3 (64-428)||(10760691-10761047)
chr3 (64-428)||(38449104-38449460)
chr3 (268-428)||(10238451-10238609)
chr3 (64-428)||(8331550-8331905)
chr3 (268-428)||(26429656-26429814)
chr3 (268-428)||(42191459-42191617)
chr3 (268-428)||(42197401-42197559)
chr3 (268-428)||(10769208-10769366)
chr3 (6-181)||(11846046-11846218)
chr3 (58-181)||(17055828-17055948)
chr3 (268-409)||(17056032-17056170)
chr3 (268-428)||(48128279-48128436)
chr3 (268-320)||(13837542-13837594)
chr3 (154-242)||(46656627-46656715)
chr3 (58-148)||(49151645-49151736)
chr3 (58-148)||(49157712-49157803)
chr3 (64-142)||(53069095-53069174)
chr3 (63-181)||(42191260-42191375)
chr3 (63-181)||(42197202-42197317)
chr3 (64-148)||(17593323-17593408)
chr3 (269-428)||(30051342-30051497)
chr3 (269-428)||(49151375-49151531)
chr3 (269-428)||(49157442-49157598)
chr3 (268-320)||(13444926-13444978)
chr3 (63-133)||(28964916-28964987)
chr3 (272-368)||(55003652-55003744)
chr3 (339-429)||(13367144-13367234)
chr3 (58-148)||(55003447-55003538)
[»] chr8 (20 HSPs)
chr8 (58-428)||(5542195-5542557)
chr8 (58-428)||(32896775-32897137)
chr8 (268-427)||(22219966-22220123)
chr8 (269-428)||(10705601-10705757)
chr8 (58-428)||(32890651-32891013)
chr8 (268-417)||(9935057-9935199)
chr8 (63-181)||(14417945-14418060)
chr8 (58-181)||(36818976-36819095)
chr8 (58-320)||(42993039-42993294)
chr8 (268-320)||(1883058-1883110)
chr8 (268-320)||(14417809-14417861)
chr8 (268-428)||(36818735-36818892)
chr8 (58-148)||(9935312-9935403)
chr8 (58-148)||(14799451-14799541)
chr8 (269-320)||(39735788-39735839)
chr8 (268-409)||(42033583-42033721)
chr8 (268-428)||(10699792-10699950)
chr8 (64-148)||(7771265-7771350)
chr8 (268-320)||(39727547-39727599)
chr8 (358-428)||(17954271-17954341)
[»] chr6 (26 HSPs)
chr6 (58-428)||(8650838-8651200)
chr6 (268-409)||(25343407-25343545)
chr6 (268-428)||(4580560-4580718)
chr6 (268-409)||(25353993-25354132)
chr6 (268-320)||(17581501-17581553)
chr6 (58-148)||(8662816-8662907)
chr6 (63-181)||(4580361-4580476)
chr6 (64-148)||(21782794-21782879)
chr6 (58-148)||(32035321-32035412)
chr6 (266-316)||(30905819-30905869)
chr6 (64-181)||(25354216-25354329)
chr6 (50-114)||(18778651-18778715)
chr6 (268-320)||(21197269-21197321)
chr6 (268-320)||(31756459-31756511)
chr6 (268-314)||(21770806-21770852)
chr6 (75-148)||(34603382-34603456)
chr6 (75-148)||(34724659-34724733)
chr6 (64-181)||(25343629-25343742)
chr6 (58-114)||(21190901-21190957)
chr6 (102-147)||(1106248-1106294)
chr6 (382-428)||(12801890-12801936)
chr6 (382-428)||(21783676-21783722)
chr6 (382-428)||(21789899-21789945)
chr6 (268-320)||(21191105-21191160)
chr6 (288-320)||(21783583-21783615)
chr6 (288-320)||(21789806-21789838)
[»] chr2 (30 HSPs)
chr2 (268-428)||(44717044-44717202)
chr2 (268-429)||(11048790-11048952)
chr2 (268-428)||(36750177-36750335)
chr2 (268-428)||(13455862-13456020)
chr2 (268-428)||(13461803-13461961)
chr2 (268-428)||(31002139-31002297)
chr2 (268-429)||(23343317-23343474)
chr2 (58-428)||(28682980-28683341)
chr2 (58-148)||(35090684-35090775)
chr2 (268-428)||(30965090-30965248)
chr2 (268-416)||(31008129-31008275)
chr2 (268-428)||(35084918-35085076)
chr2 (268-428)||(35090891-35091049)
chr2 (58-148)||(35084711-35084802)
chr2 (58-181)||(36750419-36750539)
chr2 (268-320)||(35438944-35438996)
chr2 (268-417)||(13149923-13150075)
chr2 (269-312)||(29034697-29034740)
chr2 (63-181)||(13456104-13456219)
chr2 (63-181)||(13462045-13462160)
chr2 (64-148)||(13149727-13149811)
chr2 (64-181)||(31002381-31002495)
chr2 (64-181)||(31008359-31008473)
chr2 (63-213)||(29833183-29833327)
chr2 (343-425)||(31651397-31651479)
chr2 (365-425)||(1388352-1388412)
chr2 (269-320)||(19879467-19879518)
chr2 (64-133)||(30965376-30965446)
chr2 (63-125)||(35438749-35438811)
chr2 (386-428)||(35442187-35442229)
[»] chr5 (25 HSPs)
chr5 (150-253)||(26318377-26318480)
chr5 (266-428)||(32097259-32097419)
chr5 (269-428)||(19066352-19066508)
chr5 (64-428)||(12686220-12686575)
chr5 (64-428)||(12692322-12692677)
chr5 (58-320)||(30384413-30384677)
chr5 (268-428)||(41297042-41297203)
chr5 (268-428)||(20499901-20500059)
chr5 (268-409)||(32094460-32094599)
chr5 (268-428)||(19060010-19060167)
chr5 (268-320)||(7389786-7389838)
chr5 (268-428)||(14609933-14610089)
chr5 (150-214)||(33753377-33753441)
chr5 (150-214)||(33849011-33849075)
chr5 (58-181)||(7389583-7389702)
chr5 (58-148)||(28525421-28525512)
chr5 (58-148)||(28531517-28531608)
chr5 (269-320)||(30772150-30772201)
chr5 (58-148)||(41297310-41297401)
chr5 (269-428)||(28525626-28525782)
chr5 (269-428)||(28531722-28531878)
chr5 (64-147)||(24054369-24054453)
chr5 (50-148)||(30772316-30772416)
chr5 (150-214)||(26509823-26509887)
chr5 (100-147)||(37896375-37896423)
[»] chr4 (29 HSPs)
chr4 (268-428)||(10739578-10739733)
chr4 (268-428)||(10953347-10953502)
chr4 (268-428)||(24287750-24287907)
chr4 (268-428)||(10733591-10733746)
chr4 (268-428)||(10947360-10947515)
chr4 (63-409)||(48160741-48161078)
chr4 (268-409)||(6257444-6257582)
chr4 (63-409)||(48166960-48167297)
chr4 (268-409)||(26957042-26957181)
chr4 (266-416)||(50168370-50168516)
chr4 (269-427)||(33461632-33461787)
chr4 (64-181)||(33458308-33458422)
chr4 (336-428)||(9237145-9237236)
chr4 (5-148)||(50168626-50168770)
chr4 (58-148)||(10733281-10733372)
chr4 (58-148)||(10739374-10739465)
chr4 (58-148)||(10947050-10947141)
chr4 (58-148)||(10953143-10953234)
chr4 (64-148)||(6257246-6257331)
chr4 (50-148)||(3769600-3769699)
chr4 (275-424)||(35177563-35177710)
chr4 (268-427)||(33458506-33458662)
chr4 (64-148)||(33461434-33461518)
chr4 (268-320)||(17627019-17627071)
chr4 (268-320)||(49976455-49976505)
chr4 (268-313)||(4632257-4632302)
chr4 (50-146)||(9237398-9237495)
chr4 (382-426)||(17627125-17627169)
chr4 (268-320)||(44831858-44831910)
[»] scaffold0208 (2 HSPs)
scaffold0208 (268-428)||(6285-6443)
scaffold0208 (268-428)||(12158-12316)
[»] chr1 (20 HSPs)
chr1 (268-428)||(1078007-1078165)
chr1 (268-428)||(8093085-8093242)
chr1 (63-428)||(25387544-25387901)
chr1 (268-428)||(31057807-31057965)
chr1 (268-428)||(25381774-25381932)
chr1 (268-428)||(31051307-31051465)
chr1 (58-148)||(34740019-34740110)
chr1 (268-428)||(34739749-34739906)
chr1 (64-148)||(1078257-1078342)
chr1 (268-428)||(44409763-44409921)
chr1 (58-135)||(12183619-12183697)
chr1 (63-181)||(25381575-25381690)
chr1 (64-181)||(8092887-8093001)
chr1 (268-431)||(24927000-24927160)
chr1 (64-125)||(27955218-27955279)
chr1 (64-148)||(31058078-31058162)
chr1 (268-320)||(24963948-24964000)
chr1 (58-148)||(24926789-24926880)
chr1 (295-428)||(50305960-50306090)
chr1 (154-208)||(38152097-38152151)
[»] scaffold0363 (2 HSPs)
scaffold0363 (63-181)||(659-774)
scaffold0363 (268-320)||(858-910)
[»] scaffold0236 (1 HSPs)
scaffold0236 (58-148)||(5568-5659)
[»] scaffold0012 (2 HSPs)
scaffold0012 (268-409)||(173129-173267)
scaffold0012 (58-148)||(172925-173016)
[»] scaffold0440 (1 HSPs)
scaffold0440 (74-320)||(1245-1485)
[»] scaffold1114 (2 HSPs)
scaffold1114 (302-424)||(830-949)
scaffold1114 (268-320)||(952-1004)
[»] scaffold0064 (1 HSPs)
scaffold0064 (344-428)||(14036-14121)
[»] scaffold1064 (1 HSPs)
scaffold1064 (336-425)||(1134-1222)


Alignment Details
Target: scaffold0085 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 41 - 442
Target Start/End: Complemental strand, 38569 - 38176
Alignment:
Q  41 ataagactagttcaattattaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttgtttatcaagaatatt 140  Q
    |||||||  ||||||| ||||| |||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  38569 ataagacatgttcaatcattagaaatcaacagtggaagcaaacaaaacattgaacatagttatgatcggatctacaacatgtttgtttatcaagaatatt 38470  T
Q  141 aataattatattaggtattaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctga 240  Q
    ||||||||     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38469 aataatta-----ggtattaggaatacctggatgaagctttgacgacaatcatctcaacaacaatgatctaaaacaaggagaggagattatctaatctga 38375  T
Q  241 aatacaataaagggctagcggcgactagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtg-attatcgt 339  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||    |||||||| |||||| |    
T  38374 aatacaataaagggctagcggcggctagttcttcctcaactgatacctttatgtctcaagttctcttcagatgggaaga----atagagtgtattatcat 38279  T
Q  340 gtacggtgtattggagagcataacctcttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccaccatatgatgtc 439  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||    
T  38278 gtacggtgtattggagaccataacctcttatagtgtgatgatcattagggttttctattattccgttaatcggtcatctagacatccaccatattaagtc 38179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 50 - 428
Target Start/End: Complemental strand, 43540117 - 43539740
Alignment:
Q  50 gttcaattattaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    ||||||| |||| |||||||||| ||||  |||  ||| ||||| |||  ||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  43540117 gttcaataattatgaatcaatagcggaattaaataaaatattgaacatgattatgatcggatctacaacatgtttgatttatcaagaatattaaaaatta 43540018  T
Q  149 tattaggtattaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaa--ataca 246  Q
         ||||||| |||||||| |||||||||||||  |||||| |||||||||||| |||   |||||| |||||||| | |  | |||||||  | |||    
T  43540017 ----gggtattatgaatacctggatgaagctttgataacaatcctctcaacaacaacgat---aaacaaagagaggaggtga--tgatctgaaacacaca 43539927  T
Q  247 ataaagggctagcggcgac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgt 341  Q
    | | | || ||||||||||     | |||||||||||||  |||| |||||| || |||||||||||||||||| || | | | |||| | ||  ||||     
T  43539926 aaatatggttagcggcgactgatttggttcttcctcaaccagtacctttatgcctaaagttctcttcagatgggaaggaga-agagagagtttgccgtgc 43539828  T
Q  342 acggtgtattggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| |||||| || |||||||||  ||||| || | ||| |||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  43539827 acggtatattggggaccataacctcttttatattg-ggtgaccattagggttttccgttattccgttaatgggtcatccagacatccac 43539740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 268 - 407
Target Start/End: Complemental strand, 15843867 - 15843730
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgta-cggtgtattggagagcataacctc 366  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    |||||| | ||  |||||| |||||||||||||| |||||||||    
T  15843867 gttcttcctcaactggtacatttatgcctcaagttctcttcagatggggaga----atagagagtttgccgtgtaccggtgtattggagaccataacctc 15843772  T
Q  367 --ttatagtgtgatgatcattagggttttccattattccgtta 407  Q
      ||||| || ||||| |||||| |||| ||||||||||||||    
T  15843771 ttttatattg-gatgaccattagagtttcccattattccgtta 15843730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 268 - 407
Target Start/End: Complemental strand, 15860976 - 15860839
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgta-cggtgtattggagagcataacctc 366  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    |||||| | ||  |||||| |||||||||||||| |||||||||    
T  15860976 gttcttcctcaactggtacatttatgcctcaagttctcttcagatggggaga----atagagagtttgccgtgtaccggtgtattggagaccataacctc 15860881  T
Q  367 --ttatagtgtgatgatcattagggttttccattattccgtta 407  Q
      ||||| || ||||| |||||| |||| ||||||||||||||    
T  15860880 ttttatattg-gatgaccattagagtttcccattattccgtta 15860839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 58 - 428
Target Start/End: Original strand, 3817346 - 3817707
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||    
T  3817346 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggt 3817441  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | | ||| | ||||| |||||| |||   || ||| ||||| |||     | |||||||| |||  | || | |    
T  3817442 attaggaatacctggataaagctttcaaggcaaccctctcatcaacaacgat---aaccaaagagagaaga-----tgatctgaaacacacaatagagtt 3817533  T
Q  257 agcggcgac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    ||||||| |     | |||||||||||||  |||| |||||| |||||||||||||||||||||||||    | |||| | ||  |||||||||| ||||    
T  3817534 agcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtgtacggtatatt 3817629  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||| ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  3817630 ggggaccatagcctcttttatattg-gatgaccattagggtttcccattattccgttaatgggccatccggacatccac 3817707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 64 - 428
Target Start/End: Original strand, 28421000 - 28421355
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     | |||||||    
T  28421000 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----ggctattagg 28421095  T
Q  163 aataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcggc 262  Q
    ||||||| ||| ||||||| | | ||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | |||||||    
T  28421096 aatacctggataaagctttcaaggcagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagttagcggc 28421187  T
Q  263 gac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagag 357  Q
    | |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | ||  ||||||||||||||||| ||     
T  28421188 ggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtgtacggtgtattggggac 28421283  T
Q  358 cataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| ||||  ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  28421284 catagcctcttttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 28421355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 428
Target Start/End: Original strand, 3811204 - 3811565
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||    
T  3811204 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggt 3811299  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | | ||| | ||||| |||||| |||   ||  || ||||| |||     | |||||||| |||  | || | |    
T  3811300 attaggaatacctggataaagctttcaaggcaaccctctcatcaacaacgat---aacaaaagagagaaga-----tgatctgaaacacacaatagagtt 3811391  T
Q  257 agcggcgac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    ||||||| |     | |||||||||||||  |||| |||||| |||||||||||||||||||||||||    | |||| | ||  |||||||||| ||||    
T  3811392 agcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtgtacggtatatt 3811487  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||| ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  3811488 ggggaccatagcctcttttatattg-gatgaccattagggtttcccattattccgttaatgggccatccggacatccac 3811565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 5979413 - 5979510
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | |  |||| ||| |||||||||||||||||| || ||||||||||    
T  5979413 gttcttcctcaaccggtacttttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtgtattggggaccataacctct 5979509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 20239068 - 20238955
Alignment:
Q  65 atcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagga 163  Q
    |||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     ||||||||||    
T  20239068 atcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggtattagga 20238973  T
Q  164 ataccttgatgaagcttt 181  Q
    |||||| ||| |||||||    
T  20238972 atacctggataaagcttt 20238955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 339495 - 339404
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  339495 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 339404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 428
Target Start/End: Complemental strand, 351706 - 351550
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc-- 366  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | || ||||||||||| |||||| || |||| ||||      
T  351706 ttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgtcgtgtacggtatattggggaccatagcctctt 351611  T
Q  367 ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| || ||||  ||||||||||| ||||||||||  |||| || ||||  |||||||||    
T  351610 ttatattg-gatggccattagggtttcccattattccagtaatgggccatccggacatccac 351550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 20238871 - 20238819
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  20238871 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaa 20238819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 339299 - 339248
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  339299 ttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaa 339248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 351910 - 351819
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| ||||||| || |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  351910 attatgaatcaacagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 351819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 5849450 - 5849398
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| |||||||| |||||||||||||||||    
T  5849450 gttcttcctcaaccggtacctttatgcctcaagttatcttcagatggggagaa 5849398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 35148045 - 35148160
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    |||| |||| |||||||||| ||||||||| |||  |||||||||||||||  ||| ||||| ||||||||| ||||||| |||||     |||||||||    
T  35148045 aatcgatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacacgtttgatttatcaaggatattaagaatta---ggggtattagg 35148141  T
Q  163 aataccttgatgaagcttt 181  Q
    ||||||| ||| |||||||    
T  35148142 aatacctggataaagcttt 35148160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 35148248 - 35148300
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||    
T  35148248 gttcttcctcaaccggtacctttatgcctcaaattctcttcagatggggagaa 35148300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 18656892 - 18657047
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||||| ||| |||||||||  ||||||||||||| || ||||    | |||  | || ||||||| |||| ||||||||  ||| |||||    
T  18656892 gttcttcctcaactgttacttttatgtctttagttctcttcagacggagaga----agagaaagtttgtcgtgtatggtgcattggagacaatagcctct 18656987  T
Q  368 tatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || |||||||||  ||||||| ||| ||||||||   ||||| ||||||| ||||||||||    
T  18656988 tacagtgtgatg-ccattaggatttaccattattgtattaatgggtcatccagacatccac 18657047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 42767330 - 42767421
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||| ||||| |||  |||||||||||||||  |||| |||| ||||||||| ||||||| |||||    
T  42767330 attatgaatcaatagcggaagcaaacaaaatattgaacatgattatgatcggatctacgacatatttgatttatcaaggatattaagaatta 42767421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 26383706 - 26383607
Alignment:
Q  102 atgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattaggaataccttgatgaagctttgacgacaatcatctcaaca 200  Q
    |||||||||||||  ||||||||| ||||||||| ||| ||| |||||     |||||||||||||||||||||||||||||| | ||  | ||||||||    
T  26383706 atgatcggatctacgacatgtttgatttatcaagcatactaagaattag----ggtattaggaataccttgatgaagctttgatggcagccctctcaaca 26383611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 22741969 - 22742038
Alignment:
Q  67 caatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaaga 135  Q
    |||||| ||||||||||| |||||||| |||  |||||||||||||||  ||||||||| ||||||||||    
T  22741969 caatagcggaagcaaactgaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaga 22742038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 22742176 - 22742220
Alignment:
Q  276 tcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||    
T  22742176 tcaactggtacctttatgcctcaagttctcttcagattgggagaa 22742220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 35150788 - 35150832
Alignment:
Q  276 tcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||    
T  35150788 tcaaccggtacctttatgcctcaagttctcttcagatggggagaa 35150832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 35152873 - 35152925
Alignment:
Q  376 gatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  35152873 gatgaccattagggtttcccattattccgttaatgggtcatccggacatccac 35152925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 12804124 - 12804033
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||| | ||||||||| |||    |||| ||||||||  ||||||||| ||||||||||||||||| |||||    
T  12804124 attatgaatcaatagcggaagcaagcaaaacattgaacatgaacatgaacggatctacgacatgtttgatttatcaagaatattaagaatta 12804033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 26381004 - 26380952
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||||| ||| |||||| || ||||| ||||||||| |||||||    
T  26381004 gttcttcctcaactgctacctttatgcctaaagttttcttcagatcgggagaa 26380952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 26383484 - 26383432
Alignment:
Q  376 gatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| ||||||||||| |||||||||| ||||| |||||||  |||||||||    
T  26383484 gatgaccattagggtttcccattattccattaatgggtcatccggacatccac 26383432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 64 - 428
Target Start/End: Original strand, 38455591 - 38455947
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||||||||| |||  ||||||||||||||| |||||||||| ||||||||| ||||||| |||||     |||||||||    
T  38455591 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaaggatattaagaatta----gggtattagg 38455686  T
Q  163 aataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcggc 262  Q
    ||||||| ||| |||||||   | ||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | |||||||    
T  38455687 aatacctggataaagctttcgaggcagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagttagcggc 38455778  T
Q  263 gac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagag 357  Q
    | |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| ||     
T  38455779 ggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattggggac 38455875  T
Q  358 cataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| ||||  ||||| || ||||| ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  38455876 catagcctcttttatattg-gatgaccattagggtttcccattattccgttaatgggtcatccggacatccac 38455947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 428
Target Start/End: Original strand, 10244369 - 10244731
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     | |    
T  10244369 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattag----gct 10244464  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | ||||  | ||||| |||||| |||   || ||| |||||||||| || |     |||| |||  | || | |    
T  10244465 attaggaatacctggataaagctttcaagacagccctctcatcaacaacgat---aaccaaagagaggagatgatat-----gaaacacacaatagagtt 10244556  T
Q  257 agcggcgacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    ||||||| ||      ||||||||||||| |||||||||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||||||||    
T  10244557 agcggcggctgatttggttcttcctcaaccggtacatttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtatt 10244653  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  10244654 ggggaccatagcctcttttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 10244731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 428
Target Start/End: Original strand, 11839760 - 11840122
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||    
T  11839760 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggt 11839855  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | | ||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | |    
T  11839856 attaggaatacctggataaagctttcaaggcagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagtt 11839947  T
Q  257 agcggcgac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    ||||||| |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||||||||    
T  11839948 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtatt 11840044  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  11840045 ggggaccatagcctcttttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 11840122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 428
Target Start/End: Original strand, 10760691 - 10761047
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||  ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||||||||    
T  10760691 aatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattag----ggtattagg 10760786  T
Q  163 aataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcggc 262  Q
    ||||||| ||| ||||||| | | ||  | ||||| |||||| |||   || ||| |||||||||| ||||     |||| |||  | || | |||||||    
T  10760787 aatacctggataaagctttcaaggcagccctctcatcaacaacgat---aaccaaagagaggagatgatct-----gaaacacacaatagagttagcggc 10760878  T
Q  263 gacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagag 357  Q
    ||||      |||||||||||||  |||| |||||| |||||||||||||||||||||||||| | |  |||| ||| ||||||||||| |||||| ||     
T  10760879 gactgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtatattggggac 10760975  T
Q  358 cataacctctt--atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| ||||||  ||| || |||| |||||||||||| |||||||||||||||| || ||||  |||||||||    
T  10760976 catagcctcttttatattg-gatggtcattagggtttcccattattccgttaatgggccatccggacatccac 10761047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 428
Target Start/End: Original strand, 38449104 - 38449460
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||||||||| |||  ||||||||||||||| |||||||||| ||||||||| ||||||| |||||     |||||||||    
T  38449104 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaaggatattaagaatta----gggtattagg 38449199  T
Q  163 aataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcggc 262  Q
    ||||||| ||| || ||||   | ||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | |||||||    
T  38449200 aatacctggataaaactttcgaggcagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagttagcggc 38449291  T
Q  263 gac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagag 357  Q
    | |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| ||     
T  38449292 ggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattggggac 38449388  T
Q  358 cataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| ||||  ||||| || ||||| ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  38449389 catagcctcttttatattg-gatgaccattagggtttcccattattccgttaatgggtcatccggacatccac 38449460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 10238451 - 10238609
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  10238451 gttcttcctcaaccggtacatttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 10238547  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  10238548 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 10238609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 64 - 428
Target Start/End: Complemental strand, 8331905 - 8331550
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     | |||||||    
T  8331905 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----ggctattagg 8331810  T
Q  163 aataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcggc 262  Q
    ||||||| ||| ||||||| | | ||  | ||||  |||||| |||   || ||| |||||||||| |||||     ||| |||  | || | |||||||    
T  8331809 aatacctggataaagctttcaaggcagccctctcgtcaacaacgat---aaccaaagagaggagatgatcta-----aaacacacaatagagttagcggc 8331718  T
Q  263 gac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagag 357  Q
    | |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | ||  ||||||| ||||||||| ||     
T  8331717 ggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtgtacagtgtattggggac 8331622  T
Q  358 cataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| ||||  ||||| || ||||| ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  8331621 catagcctcttttatattg-gatgaccattagggtttcccattattccgttaatgggtcatccggacatccac 8331550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 26429656 - 26429814
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| || |||| ||||     
T  26429656 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattggggaccatagcctct 26429752  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||| ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  26429753 tttatactg-gatgaccattagggtttcccattattccgttaatgggccatccggacatccac 26429814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 42191459 - 42191617
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  42191459 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 42191555  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  42191556 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 42191617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 42197401 - 42197559
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  42197401 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 42197497  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  42197498 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 42197559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 10769208 - 10769366
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| || |||| ||||     
T  10769208 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattggggaccatagcctct 10769304  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  10769305 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 10769366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 11846046 - 11846218
Alignment:
Q  6 tgttggaaagttaggtgtcaagtaaaccagatggtataagactagttcaattattaggaatcaatagtggaagcaaactaaacattgatcatagttatga 105  Q
    ||||||||| |||||| | || |||| |||||  ||||| ||  ||||||  ||||  ||||||||| |||||||||| ||||||||| |||  ||||||    
T  11846046 tgttggaaatttaggtcttaattaaaacagattttataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatga 11846145  T
Q  106 tcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattaggaataccttgatgaagcttt 181  Q
    |||||||||  ||||||||| ||||||||| ||||||| |||||     |||||||||||||||| ||| |||||||    
T  11846146 tcggatctacgacatgtttgatttatcaagtatattaagaatta----gggtattaggaatacctggataaagcttt 11846218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 17055828 - 17055948
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||    
T  17055828 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggt 17055923  T
Q  157 attaggaataccttgatgaagcttt 181  Q
    ||||||||||||| ||| |||||||    
T  17055924 attaggaatacctggataaagcttt 17055948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 17056032 - 17056170
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | ||  |||||||| |||||||| || |||| ||||     
T  17056032 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtgtacgatgtattggggaccatagcctct 17056127  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaat 409  Q
     ||||| || ||||  ||||||||||| ||||||||||||||||    
T  17056128 tttatattg-gatgtccattagggtttcccattattccgttaat 17056170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 48128279 - 48128436
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||||||||| |||||| ||  |||||||||||||  ||||||| |    || || ||  |||||||||| |||||| || |||| |||||    
T  48128279 gttcttcctcaactggtacctttatgcctttagttctcttcagacagggagaaga----gaatgtttgccgtgtacggtatattggggaccatagcctct 48128374  T
Q  368 t--atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |  ||| || ||||| ||||| |||||||||||||||||||||| |||||||  |||||||||    
T  48128375 tttatattg-gatgaccattaaggttttccattattccgttaatgggtcatccggacatccac 48128436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 13837594 - 13837542
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  13837594 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaa 13837542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 46656715 - 46656627
Alignment:
Q  154 ggtattaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaa 242  Q
    |||||||| |||||||  |||||||||| | ||||| | |||||||||||| ||||| ||||||||||||||||| || |||| |||||    
T  46656715 ggtattagaaatacctgaatgaagctttcatgacaaccctctcaacaacaacgatctaaaacaaggagaggagatgatataatatgaaa 46656627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 49151736 - 49151645
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||| ||| ||||||| |||||    
T  49151736 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaagaatta 49151645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 49157803 - 49157712
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||| ||| ||||||| |||||    
T  49157803 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaagaatta 49157712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 53069095 - 53069174
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaa 142  Q
    |||| |||| |||||||||| ||||||||| |||  |||||||||||||||| ||||||||| ||||||||| |||||||    
T  53069095 aatcgatagcggaagcaaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaa 53069174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 42191260 - 42191375
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| | |  |||||||||||||||  ||||||||| |||||||||  |||||| |||||     ||||||||    
T  42191260 gaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaagggtattaagaatta----gggtattag 42191355  T
Q  162 gaataccttgatgaagcttt 181  Q
    |||||||| ||| |||||||    
T  42191356 gaatacctggataaagcttt 42191375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 42197202 - 42197317
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| | |  |||||||||||||||  ||||||||| |||||||||  |||||| |||||     ||||||||    
T  42197202 gaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaagggtattaagaatta----gggtattag 42197297  T
Q  162 gaataccttgatgaagcttt 181  Q
    |||||||| ||| |||||||    
T  42197298 gaatacctggataaagcttt 42197317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 17593323 - 17593408
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgttt-gtttatcaagaatattaataatta 148  Q
    ||||||| | |||||||||| ||||||||| |||  |||||||||||||||  ||||||||  ||||||||||||||||| |||||    
T  17593323 aatcaatcgcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttaatttatcaagaatattaagaatta 17593408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 428
Target Start/End: Original strand, 30051342 - 30051497
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc-- 366  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||| |||    | |||| | ||  |||||||||| |||||| || |||| ||||      
T  30051342 ttcttcctcaaccggtacctttatgcctcaagttctcttcagatgggcaga----agagagagtttgccgtgtacggtatattggggaccatagcctctt 30051437  T
Q  367 ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| || ||||  |||||||| ||||||||||||||||||| || ||||  |||||||||    
T  30051438 ttatattg-gatggccattaggg-tttccattattccgttaatgggccatccggacatccac 30051497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 428
Target Start/End: Complemental strand, 49151531 - 49151375
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc-- 366  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||||||||    | |||| | ||  | |||||||| |||||| || |||| ||||      
T  49151531 ttcttcctcaaccggtacctttatgcctcacgttctcttcagatggggaga----agagagagtttgccatgtacggtatattggggaccatagcctctt 49151436  T
Q  367 ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  49151435 ttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 49151375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 428
Target Start/End: Complemental strand, 49157598 - 49157442
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc-- 366  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||||||||    | |||| | ||  | |||||||| |||||| || |||| ||||      
T  49157598 ttcttcctcaaccggtacctttatgcctcacgttctcttcagatggggaga----agagagagtttgccatgtacggtatattggggaccatagcctctt 49157503  T
Q  367 ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  49157502 ttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 49157442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 13444978 - 13444926
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| | ||| |||||| ||||||||||||||||||||||||||    
T  13444978 gttcttcctcaaccgatacttttatgcctcaagttctcttcagatggggagaa 13444926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 28964987 - 28964916
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaa 133  Q
    |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||    
T  28964987 gaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaa 28964916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 368
Target Start/End: Original strand, 55003652 - 55003744
Alignment:
Q  272 ttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctctt 368  Q
    ||||||||  ||||| |||||| |||||||||||||||||||||||||    | |||| | || ||||||||||| |||||| || |||||||||||    
T  55003652 ttcctcaatcggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgtcgtgtacggtatattggggaccataacctctt 55003744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 13367144 - 13367234
Alignment:
Q  339 tgtacggtgtattggagagcataacctctt-atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccacc 429  Q
    |||||||| |||||| || |||| |||||| ||| || |||| |||||||||||| |||||||||||||||| |  |||| |||||||||||    
T  13367144 tgtacggtatattggggaccatagcctctttatattg-gatggtcattagggtttcccattattccgttaatggaccatccagacatccacc 13367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 55003447 - 55003538
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgttt-gtttatcaagaatattaataatta 148  Q
    |||| ||||||||||  ||||||||  ||||||||| |||  |||||||||||||||  ||||||||  ||||||||| ||||||| |||||    
T  55003447 attatgaatcaatagcagaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttaatttatcaagtatattaagaatta 55003538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 428
Target Start/End: Original strand, 5542195 - 5542557
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||    
T  5542195 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggt 5542290  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | | ||  | ||||| |||||| |||   || ||| ||| |||||     | |||||||| |||  | || | |    
T  5542291 attaggaatacctagataaagctttcaaggcagccctctcatcaacaacgat---aaccaaagaggggaga-----tgatctgaaacacacaatagagtt 5542382  T
Q  257 agcggcgac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    ||||||| |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||||||||    
T  5542383 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtatt 5542479  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||  ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  5542480 ggggaccatagcctcttttatattg-gatggccattagggtttcccattattccgttaatgggtcatccggacatccac 5542557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 428
Target Start/End: Complemental strand, 32897137 - 32896775
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| |||| |||| ||||||| |||||     |||    
T  32897137 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaattag----ggt 32897042  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | ||||| | ||||| ||||||  ||   || ||| |||| ||||| ||||     |||| |||  | || | |    
T  32897041 attaggaatacctggataaagctttcaagacaaccctctcatcaacaacaat---aaccaaagagatgagatgatct-----gaaacacacaatagagtt 32896950  T
Q  257 agcggcgacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    ||||||| ||      ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| ||||    
T  32896949 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatatt 32896853  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  32896852 ggggaccatagcctcttttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 32896775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 427
Target Start/End: Original strand, 22219966 - 22220123
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| || |||| ||||     
T  22219966 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattggggaccatagcctct 22220062  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatcca 427  Q
     ||||| || ||||| ||||||||||| |||||||||||||||| || ||||  ||||||||    
T  22220063 tttatattg-gatgaccattagggtttcccattattccgttaatgggccatccggacatcca 22220123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 428
Target Start/End: Complemental strand, 10705757 - 10705601
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctctt 368  Q
    |||||||||||| ||||| |||||| || ||||||||||||||||||||||| | |  |||| ||| ||||||||||| ||||||||| |||| ||||||    
T  10705757 ttcttcctcaaccggtacctttatggcttaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtatattggagaccatagcctctt 10705661  T
Q  369 atag-tgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||  | ||||||  |||||||||| |||||||||||||||| || ||||  |||||||||    
T  10705660 ttatatttgatgactattagggttt-ccattattccgttaatgggccatccggacatccac 10705601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 428
Target Start/End: Complemental strand, 32891013 - 32890651
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| |||| |||| ||||||| |||||     |||    
T  32891013 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaattag----ggt 32890918  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | | ||| | ||||| ||||||  ||   || ||| |||| ||||| ||||     |||| |||  | || | |    
T  32890917 attaggaatacctggataaagctttcaaggcaaccctctcatcaacaacaat---aaccaaagagatgagatgatct-----gaaacacacaatagagtt 32890826  T
Q  257 agcggcgacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    ||||||| ||      ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| ||||    
T  32890825 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatatt 32890729  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  32890728 ggggaccatagcctcttttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 32890651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 417
Target Start/End: Complemental strand, 9935199 - 9935057
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||  ||||| |||||| |||||||||||||||||||||||||      |||| | || |||||||||||||||||| || |||| |||||    
T  9935199 gttcttcctcaatcggtacctttatgcctcaagttctcttcagatggggaga------agagagtttgtcgtgtacggtgtattggggaccatagcctct 9935106  T
Q  368 tatagtgtgatgatcattagggttttccattattccgttaatcggtcatc 417  Q
    | || |  ||||  ||||| ||||| |||||||||||||||| |||||||    
T  9935105 tttatttggatggccatta-ggtttcccattattccgttaatgggtcatc 9935057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 14418060 - 14417945
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     ||||||||    
T  14418060 gaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggtattag 14417965  T
Q  162 gaataccttgatgaagcttt 181  Q
    |||||||| ||| |||||||    
T  14417964 gaatacctggataaagcttt 14417945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 36819095 - 36818976
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| ||||||||||||||||||||| |||||||||  ||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||    
T  36819095 attatgaatcaatagtggaagcaaacaaaacattgaatatgattatgatcggatctacgacatgtttgatttatcaag-atattaagaatta----gggt 36819001  T
Q  157 attaggaataccttgatgaagcttt 181  Q
    ||||||||||||| ||| |||||||    
T  36819000 attaggaatacctggataaagcttt 36818976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 320
Target Start/End: Original strand, 42993039 - 42993294
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| |||||||||| |||||| |||||     |||    
T  42993039 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaga-tattaagaattag----ggt 42993133  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||||||| |||||||     | | | ||||| |||||| |||   || ||| |||||||||| ||||     |||| |||  | || | |    
T  42993134 attaggaataccttgataaagcttttgtagccaccctctcatcaacaacgat---aaccaaagagaggagatgatct-----gaaacacacaatagagtt 42993225  T
Q  257 agcggcgacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||| ||      ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  42993226 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaa 42993294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 1883058 - 1883110
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  1883058 gttcttcctcaaccagtacctttatgtctcaagttctcttcagatggggagaa 1883110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 14417861 - 14417809
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  14417861 gttcttcctcaaccggtacgtttatgcctcaagttctcttcagatggggagaa 14417809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 36818892 - 36818735
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| ||||||||||| |||||||||||||    | |||| | ||  |||||||||| |||||| || |||| |||||    
T  36818892 gttcttcctcaaccggtacctttatgcctcaagttctcatcagatggggaga----agagagagtttgccgtgtacggtatattggggaccatagcctct 36818797  T
Q  368 tata-gtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    | ||  | ||||   ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  36818796 tttatatttgatagccattagggtttcccattattccgttaatgggccatccggacatccac 36818735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 9935403 - 9935312
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| |||||||||  ||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  9935403 attatgaatcaatagcggaagcaaacaaaacattgaatatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 9935312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 14799451 - 14799541
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  14799451 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag-atattaagaatta 14799541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 39735788 - 39735839
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  39735788 ttcttccttaactggtacatttatgcctcaagtactcttcagatggggagaa 39735839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 409
Target Start/End: Complemental strand, 42033721 - 42033583
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||| ||||    | |||| | ||  |||||||  |||||||| || |||| ||||     
T  42033721 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggagaga----agagagagtttgccgtgtacaatgtattggggaccatagcctcc 42033626  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaat 409  Q
     ||||| || ||||| ||||||||||| ||||||||||||||||    
T  42033625 tttatattg-gatgaccattagggtttcccattattccgttaat 42033583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 10699950 - 10699792
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| |||||||| || |||||||| ||||| | |  |||| |||  |||||||||| |||||| || ||||  ||||    
T  10699950 gttcttcctcaaccggtacctttatgcctcaagttttcgtcagatggagagaagaga--gagt-attgccgtgtacggtatattggggaccatagtctct 10699854  T
Q  368 tatag-tgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    | ||  | |||||| ||||||||||| |||||| ||||||||| |||||||  |||||||||    
T  10699853 tttatatttgatgaccattagggtttcccattactccgttaatgggtcatccggacatccac 10699792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 7771350 - 7771265
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| |||| |||| ||||||| |||||    
T  7771350 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaatta 7771265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 39727547 - 39727599
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||||| ||||| ||||||||||||    
T  39727547 gttcttcctcaaccggtacctttatgcctcaagtactcttgagatggggagaa 39727599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 17954341 - 17954271
Alignment:
Q  358 cataacctcttatagtgtgatgatca-ttagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| ||||||||||||| || |||| |||||||||||||||||||||||| | ||||||||  ||||||||    
T  17954341 catagcctcttatagtgtaat-atcaattagggttttccattattccgttagtgggtcatctgaacatccac 17954271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 428
Target Start/End: Original strand, 8650838 - 8651200
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||    
T  8650838 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggt 8650933  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | | ||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | |    
T  8650934 attaggaatacctggataaagctttcaaggcagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagtt 8651025  T
Q  257 agcggcgac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    ||||||| |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| ||||    
T  8651026 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatatt 8651122  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||| ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  8651123 ggggaccatagcctcttttatattg-gatgaccattagggtttcccattattccgttaatgggccatccggacatccac 8651200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 268 - 409
Target Start/End: Complemental strand, 25343545 - 25343407
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | |  |||| ||| |||||||||||||||||| || |||| |||||    
T  25343545 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtgtattgggga-catagcctct 25343450  T
Q  368 t--atagtgtgatgatcattagggttttccattattccgttaat 409  Q
    |  ||| || ||||| ||||||||||| ||||||||||||||||    
T  25343449 tttatattg-gatgaccattagggtttcccattattccgttaat 25343407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 4580560 - 4580718
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  4580560 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 4580656  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||| ||||| |||||||  |||||||||    
T  4580657 tttatattg-gatggccattagggtttcccattattccattaatgggtcatccggacatccac 4580718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 409
Target Start/End: Complemental strand, 25354132 - 25353993
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | |  |||| ||| |||||||||||||||||| || |||| |||||    
T  25354132 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtgtattggggaccatagcctct 25354036  T
Q  368 tata-gtgtgatgatcattagggttttccattattccgttaat 409  Q
    | ||  |  ||||| |||||| |||| ||||||||||||||||    
T  25354035 tttatattagatgaccattagagtttcccattattccgttaat 25353993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 17581553 - 17581501
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  17581553 gttcttcctcaacttgtacatttatgcctcaagttctcttcagatggggagaa 17581501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 8662816 - 8662907
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  8662816 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 8662907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 4580361 - 4580476
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| |||| |||| ||||||| |||||     ||||||||    
T  4580361 gaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaatta----gggtattag 4580456  T
Q  162 gaataccttgatgaagcttt 181  Q
    |||||||| ||| |||||||    
T  4580457 gaatacctggataaagcttt 4580476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 21782794 - 21782879
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  21782794 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 21782879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 32035321 - 32035412
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| |||||||||  |||||| |||||    
T  32035321 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggttattaagaatta 32035412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 30905819 - 30905869
Alignment:
Q  266 tagttcttcctcaactggtacatttatgtctcaagttctcttcagatgggg 316  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  30905819 tagttcttcctcaattggtatatttatgcctcaagttctcttcagatgggg 30905869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 25354329 - 25354216
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| || |||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||||||||    
T  25354329 aatcaatagcggaagcaaacaaagcattgaacatgattatgatcggatctacgacatgtttgatttatcaag-atattaagaatta----gggtattagg 25354235  T
Q  163 aataccttgatgaagcttt 181  Q
    ||||||| ||| |||||||    
T  25354234 aatacctggataaagcttt 25354216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 18778715 - 18778651
Alignment:
Q  50 gttcaattattaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatcta 114  Q
    ||||||| |||| |||||||||| |||||||||| |||| |||| |||| |||||||||||||||    
T  18778715 gttcaataattatgaatcaatagcggaagcaaacaaaacgttgaacataattatgatcggatcta 18778651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 21197269 - 21197321
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||  |||||| ||||||||||||||||||||||||||    
T  21197269 gttcttcctcaaccggtatctttatgcctcaagttctcttcagatggggagaa 21197321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 31756459 - 31756511
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||  ||||||||||||||||||||||||||    
T  31756459 gttcttcctcaacaggtacctttatacctcaagttctcttcagatggggagaa 31756511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 21770806 - 21770852
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatgg 314  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  21770806 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatgg 21770852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 34603382 - 34603456
Alignment:
Q  75 gaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    ||||||||| || |||||| |||| ||||||||||||||||  |||||||| ||||||||| ||||||| |||||    
T  34603382 gaagcaaacaaagcattgaacataattatgatcggatctatggcatgtttgatttatcaaggatattaacaatta 34603456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 34724659 - 34724733
Alignment:
Q  75 gaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    ||||||||| || |||||| |||| ||||||||||||||||  |||||||| ||||||||| ||||||| |||||    
T  34724659 gaagcaaacaaagcattgaacataattatgatcggatctatggcatgtttgatttatcaaggatattaacaatta 34724733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 25343742 - 25343629
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    |||||||||  ||||||||| ||||||||| |||  |||||||||||||||  |||| |||| ||||||||| ||||||| ||||| |    ||||||||    
T  25343742 aatcaatagcagaagcaaacaaaacattgaacatgattatgatcggatctacgacatttttgatttatcaag-atattaagaattaga----gtattagg 25343648  T
Q  163 aataccttgatgaagcttt 181  Q
    ||||||| ||| |||||||    
T  25343647 aatacctagataaagcttt 25343629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 21190901 - 21190957
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatcta 114  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||    
T  21190901 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatcta 21190957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 1106294 - 1106248
Alignment:
Q  102 atgatcggatctataacatgtttg-tttatcaagaatattaataatt 147  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||    
T  1106294 atgatcggatctacaacatgtttgattcatcaagaatattaataatt 1106248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 12801890 - 12801936
Alignment:
Q  382 cattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||||||||| |||||||||| ||||| ||||||| ||||||||||    
T  12801890 cattagggtttcccattattccattaatgggtcatccagacatccac 12801936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 21783676 - 21783722
Alignment:
Q  382 cattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  21783676 cattagggtttcccattattccgttaatgggtcatccggacatccac 21783722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 21789899 - 21789945
Alignment:
Q  382 cattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  21789899 cattagggtttcccattattccgttaatgggtcatccggacatccac 21789945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 21191105 - 21191160
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctca---agttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||   ||||||||||||||||||||||    
T  21191105 gttcttcctcaaccggtacctttatgcctcatcaagttctcttcagatggggagaa 21191160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 21783583 - 21783615
Alignment:
Q  288 tttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||| ||||||||||||||||||||||||||    
T  21783583 tttatgcctcaagttctcttcagatggggagaa 21783615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 21789806 - 21789838
Alignment:
Q  288 tttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||| ||||||||||||||||||||||||||    
T  21789806 tttatgcctcaagttctcttcagatggggagaa 21789838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 44717044 - 44717202
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | ||||    |||  ||||||||||||||||| || |||| ||||     
T  44717044 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagatag---tattgccgtgtacggtgtattggggaccatagcctct 44717140  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || |||| ||||||||||||||||||||||||||||| || ||||  |||||||||    
T  44717141 tttatattg-gatggtcattagggttttccattattccgttaatgggccatccggacatccac 44717202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 429
Target Start/End: Original strand, 11048790 - 11048952
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||| | | ||   | ||  |||||||| |||||||| || |||| ||||     
T  11048790 gttcttcctcaactggtacctttatgcctcaagttctcttcagatggggagaagagagagttggtttgccgtgtacgatgtattggggaccatagcctct 11048889  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccacc 429  Q
     ||||| || |||   ||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  11048890 tttatattg-gatcgccattagggtttcccattattccgttaatgggtcatccagacatccacc 11048952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 36750335 - 36750177
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||  |||||| |||||||||||||||||||||||||| | |  |||| ||| ||||||||||||||||||||| |||| |||||    
T  36750335 gttcttcctcaaccggtatctttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtgtattggagaccatagcctct 36750239  T
Q  368 t--atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |  ||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  36750238 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 36750177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 13456020 - 13455862
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  13456020 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 13455924  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  13455923 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 13455862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 13461961 - 13461803
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  13461961 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 13461865  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  13461864 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 13461803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 31002297 - 31002139
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| ||| | ||||||||| |||||| || |||| ||||     
T  31002297 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgttgtgtacggtatattggggaccatagcctct 31002201  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||| ||||| |||||||||||||||| |||||||  |||||||||    
T  31002200 tttatattg-gatggccattatggtttcccattattccgttaatgggtcatccggacatccac 31002139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 429
Target Start/End: Complemental strand, 23343474 - 23343317
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| | ||| |||||| |||||||||||||||||||||||||    | |||| | ||  ||||||||||||||||| || |||| ||||     
T  23343474 gttcttcctcaaccgatacctttatgcctcaagttctcttcagatggggaga----agagagagtttcccgtgtacggtgtattggggaccatagcctct 23343379  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccacc 429  Q
     ||||| || |||| ||||||||| |||||||||||| |||||| |||||||  ||||||||||    
T  23343378 tttatattg-gatggtcattaggg-tttccattattctgttaatgggtcatccggacatccacc 23343317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 428
Target Start/End: Original strand, 28682980 - 28683341
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| |||||||||  |||||| |||||     |||    
T  28682980 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggttattaagaattag----ggt 28683075  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    ||||||||||||| ||| ||||||| | ||||| | ||||| |||||| |||   || |||||||||  ||| ||||     |||| |||  | || | |    
T  28683076 attaggaatacctggataaagctttcaagacaaccctctcatcaacaacgat---aaccaaggagagtggatgatct-----gaaacacacaatagagtt 28683167  T
Q  257 agcggcgacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtatt 351  Q
    | | ||| ||      ||||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | ||  |||||||||| ||||    
T  28683168 aacagcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtgtacggtatatt 28683263  T
Q  352 ggagagcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    || || |||| ||||  ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  28683264 ggggaccatagcctcttttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 28683341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 35090684 - 35090775
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||||||||||| |||||    
T  35090684 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatattaacaatta 35090775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 30965248 - 30965090
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | |  |||| ||| ||||||||||| |||||| || |||| |||||    
T  30965248 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtatattggggaccatagcctct 30965152  T
Q  368 tata-gtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    | ||  |  ||||  ||||||| ||| |||||||||||||||| || ||||  |||||||||    
T  30965151 tttatattagatggccattaggatttcccattattccgttaatgggccatccggacatccac 30965090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 416
Target Start/End: Complemental strand, 31008275 - 31008129
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| ||| | ||||||||| |||||| || |||| ||||     
T  31008275 gttcttcctcaaccggtacttttatgcctcaagttctcttcagatggggaga--agagagagt-attgttgtgtacggtatattggggaccatagcctct 31008179  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcat 416  Q
     ||||| || ||||  ||||| ||||| |||||||||||||||| ||||||    
T  31008178 tttatattg-gatggccattatggtttcccattattccgttaatgggtcat 31008129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 35084918 - 35085076
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| || |||| ||||     
T  35084918 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattggggaccatagcctct 35085014  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || |||   ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  35085015 tttatattg-gatagccattagggtttcccattattccgttaatgggccatccggacatccac 35085076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 35090891 - 35091049
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| || |||| ||||     
T  35090891 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattggggaccatagcctct 35090987  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || |||   ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  35090988 tttatattg-gatagccattagggtttcccattattccgttaatgggccatccggacatccac 35091049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 35084711 - 35084802
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| |||||||||  ||  |||||||||||||||  ||||||||| ||||||||||||||||| |||||    
T  35084711 attatgaatcaatagcggaagcaaacaaaacattgaaaatgattatgatcggatctacgacatgtttgatttatcaagaatattaacaatta 35084802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 36750539 - 36750419
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||    
T  36750539 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggt 36750444  T
Q  157 attaggaataccttgatgaagcttt 181  Q
    ||||||||||||| ||| || ||||    
T  36750443 attaggaatacctggataaaacttt 36750419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 35438944 - 35438996
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  35438944 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaa 35438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 417
Target Start/End: Original strand, 13149923 - 13150075
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattat---cgtgtacggtgtattggagagcataacc 364  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||| |  ||  | | |||| || |||   |||||||||| |||||| || |||||||    
T  13149923 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatgagatgaggaga-agagagaatattgccgtgtacggtatattggggaccataacc 13150021  T
Q  365 tcttata-gtgtgatgatcattagggttttccattattccgttaatcggtcatc 417  Q
    |||| ||  |  ||||| ||||||||||| |||||||||||||||| |||||||    
T  13150022 tcttttatattagatgaccattagggtttcccattattccgttaatgggtcatc 13150075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 29034740 - 29034697
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagat 312  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  29034740 ttcttcctcaactggtacctttatgtctcaagttctcttcagat 29034697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 13456219 - 13456104
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| | |  |||||||||||||||  ||||||||| |||||||||  |||||| |||||     ||||||||    
T  13456219 gaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaagggtattaagaatta----gggtattag 13456124  T
Q  162 gaataccttgatgaagcttt 181  Q
    |||||||| ||| |||||||    
T  13456123 gaatacctggataaagcttt 13456104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 13462160 - 13462045
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| | |  |||||||||||||||  ||||||||| |||||||||  |||||| |||||     ||||||||    
T  13462160 gaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaagggtattaagaatta----gggtattag 13462065  T
Q  162 gaataccttgatgaagcttt 181  Q
    |||||||| ||| |||||||    
T  13462064 gaatacctggataaagcttt 13462045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 13149727 - 13149811
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  13149727 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag-atattaagaatta 13149811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 31002495 - 31002381
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||| ||||| |||  |||||||||||||||  ||||||||| |||||||||||||| || |||||     |||||||||    
T  31002495 aatcaatagcggaagcaaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatatcaagaatta----gggtattagg 31002400  T
Q  163 aataccttgatgaagcttt 181  Q
    |||||||  || |||||||    
T  31002399 aatacctgaataaagcttt 31002381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 31008473 - 31008359
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||| ||||| |||  |||||||||||||||  ||||||||| |||||||||||||| || |||||     |||||||||    
T  31008473 aatcaatagcggaagcaaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatatcaagaatta----gggtattagg 31008378  T
Q  163 aataccttgatgaagcttt 181  Q
    |||||||  || |||||||    
T  31008377 aatacctgaataaagcttt 31008359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 29833327 - 29833183
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||  |||| ||||  ||| ||||| |||| ||||||||||||| | |||||||||| ||||||||||    ||| ||| ||  |||||||||     
T  29833327 gaatcaataacggaaacaaataaaatattgaacataattatgatcggatcgacaacatgtttgatttatcaaga----taacaataat--taggtattaa 29833234  T
Q  162 gaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaa 213  Q
    |||||||| ||||||| ||||| ||||| | |||||||||||| ||||||||    
T  29833233 gaatacctggatgaag-tttgatgacaaccctctcaacaacaacgatctgaa 29833183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 31651479 - 31651397
Alignment:
Q  343 cggtgtattggagagcataacctcttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatc 425  Q
    |||| |||||| || | ||||||||||| |||||||| |||||| ||||| |||||||||  ||||| | |||||||||||||    
T  31651479 cggtatattggggaccgtaacctcttatggtgtgatggtcattaaggtttcccattattcttttaatggatcatctagacatc 31651397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 1388352 - 1388412
Alignment:
Q  365 tcttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatc 425  Q
    ||||||||||||||||||||| | ||||  ||||||||||||||   ||||||||||||||    
T  1388352 tcttatagtgtgatgatcattggagtttctcattattccgttaacgtgtcatctagacatc 1388412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 19879518 - 19879467
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||| ||||  ||||| |||||| ||||||||||||||||||||||||||    
T  19879518 ttcttcttcaatcggtacctttatgcctcaagttctcttcagatggggagaa 19879467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 30965446 - 30965376
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaa 133  Q
    ||||||||| |||||||||| ||| ||||| |||  |||||||||||||||  ||||||||| ||||||||    
T  30965446 aatcaatagcggaagcaaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaa 30965376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 35438749 - 35438811
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg 125  Q
    |||||||||| |||||||||  ||||||||| |||  |||||||||||||||  |||||||||    
T  35438749 gaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttg 35438811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 35442187 - 35442229
Alignment:
Q  386 agggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||||||||||||||||||||||| |||||||  |||||||||    
T  35442187 agggttttccattattccgttaatgggtcatccggacatccac 35442229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 26318377 - 26318480
Alignment:
Q  150 attaggtattaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaata 249  Q
    ||||||||||||||||||||| |||||||||||| |||   | |||||||||||| |||||||||||  |||||||||| |||||||||||||||||| |    
T  26318377 attaggtattaggaataccttaatgaagctttgatgacgggcctctcaacaacaacgatctgaaacagagagaggagatgatctaatctgaaatacaaca 26318476  T
Q  250 aagg 253  Q
    ||||    
T  26318477 aagg 26318480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 32097259 - 32097419
Alignment:
Q  266 tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacct 365  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |  |||| |||  ||||||||||||||||| || |||| |||    
T  32097259 tagttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaataga--gagt-atttccgtgtacggtgtattggggaccatagcct 32097355  T
Q  366 ctt--atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||  ||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  32097356 cttttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 32097419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 269 - 428
Target Start/End: Original strand, 19066352 - 19066508
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacc--tc 366  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | || |||||| ||||||||||| || || ||||  |     
T  19066352 ttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgtcgtgtccggtgtattggggaccacaacctatt 19066447  T
Q  367 ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| || |||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  19066448 ttatattg-gatggtcattagggttttccattatttcgttaatgggtcatccagacatccac 19066508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 428
Target Start/End: Original strand, 12686220 - 12686575
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     | |||||||    
T  12686220 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----ggctattagg 12686315  T
Q  163 aataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcggc 262  Q
    ||||||| ||| ||||||| | | ||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | |||||||    
T  12686316 aatacctggataaagctttcaaggcagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagttagcggc 12686407  T
Q  263 gac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagag 357  Q
    | |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | ||  ||||||||||||||||| ||     
T  12686408 ggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtgtacggtgtattggggac 12686503  T
Q  358 cataacctcttata-gtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| |||||| ||  | |||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  12686504 catagcctcttttatatttgatggccattagggtttcccattattccgttaatgggccatccggacatccac 12686575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 428
Target Start/End: Original strand, 12692322 - 12692677
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     | |||||||    
T  12692322 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----ggctattagg 12692417  T
Q  163 aataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcggc 262  Q
    ||||||| ||| ||||||| | | ||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | |||||||    
T  12692418 aatacctggataaagctttcaaggcagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagttagcggc 12692509  T
Q  263 gac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagag 357  Q
    | |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | ||  ||||||||||||||||| ||     
T  12692510 ggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtgtacggtgtattggggac 12692605  T
Q  358 cataacctcttata-gtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| |||||| ||  | |||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  12692606 catagcctcttttatatttgatggccattagggtttcccattattccgttaatgggccatccggacatccac 12692677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 320
Target Start/End: Original strand, 30384413 - 30384677
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| ||   ||||||||||||||| | ||||| || ||||||||| ||||||| ||| |     |||    
T  30384413 attatgaatcaatagcggaagcaaacaaaacattgaacacgattatgatcggatctaga-catgtctgatttatcaaggatattaagaataag----ggt 30384507  T
Q  157 attaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggct 256  Q
    |||| |||||||| |||||||||||   |||||   ||||  || ||| ||||| ||||||||||||||||| ||||||||||||| |||  | |  |||    
T  30384508 attaagaatacctggatgaagctttcgtgacaactctctcgccatcaacgatctaaaacaaggagaggagatgatctaatctgaaacacacaacatagct 30384607  T
Q  257 -agcggcgacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
     ||||||||||      ||||||||||||| ||||| |||||  ||| ||||||||||||||||||||||    
T  30384608 tagcggcgactgatttggttcttcctcaaccggtacctttatacctcgagttctcttcagatggggagaa 30384677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 41297203 - 41297042
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagt---tctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacc 364  Q
    ||||||||||||| ||||| |||||| |||||||   ||||||||||||||||||| | |  |||| ||| |||||||||||||||||| || |||| ||    
T  41297203 gttcttcctcaaccggtacctttatgcctcaagtagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtgtattggggaccatagcc 41297107  T
Q  365 tctt--atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||  ||| || ||||| ||||||||||| ||||||||| |||||| |||||||  |||||||||    
T  41297106 tcttttatattg-gatgaccattagggtttcccattattctgttaatgggtcatccggacatccac 41297042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 20500059 - 20499901
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||| ||| |||||||||||| ||||||||||||||| |||| ||||| | |  ||||  ||  ||||||||||||||||| || |||| |||||    
T  20500059 gttcttccttaaccggtacatttatgcctcaagttctcttcaaatggagagaacaga--gagtt-ttgccgtgtacggtgtattggggaccatagcctct 20499963  T
Q  368 tat--agtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||  | || ||||| |||||||||||||||||||| ||||||| || |||| ||||||||||    
T  20499962 tatttattg-gatgaccattagggttttccattatttcgttaatgggccatccagacatccac 20499901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 32094460 - 32094599
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | |  |||| ||| |||||||||||||||| | || |||| |||||    
T  32094460 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtgtatttgggaccatagcctct 32094556  T
Q  368 tata-gtgtgatgatcattagggttttccattattccgttaat 409  Q
    | ||  |  ||||  ||||||||||| ||||||||||||||||    
T  32094557 tttatattagatggccattagggtttcccattattccgttaat 32094599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 19060010 - 19060167
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||||||||| |||||| ||||||||||||||| || ||||||    | |||| | || ||||||  | |||||||| || |||| ||||     
T  19060010 gttcttcctcaactggtacttttatgcctcaagttctcttcatatcgggaga----agagagagtttgtcgtgtctgatgtattggggaccatagcctct 19060105  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || |||| ||||||||||    
T  19060106 tttatattg-gatggccattagggtttcccattattccgttaatgggacatccagacatccac 19060167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 7389786 - 7389838
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  7389786 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaa 7389838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 14610089 - 14609933
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| || ||||||||||||||||||||||    | |||  | ||  ||||| ||||||||||| || ||||||||||    
T  14610089 gttcttcctcaaccggtacttttatgcctaaagttctcttcagatggggaga----aaagaaagtttgccgtgttcggtgtattggggaccataacctct 14609994  T
Q  368 tata-gtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    | ||  |  ||||| |||||||| ||||||||||||||||||| || ||||  |||||||||    
T  14609993 tttacattagatgaccattaggg-tttccattattccgttaatgggccatccggacatccac 14609933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 33753377 - 33753441
Alignment:
Q  150 attaggtattaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaa 214  Q
    |||||||||||||||||||||||||||| ||||| |||| || |||||||||||| ||| |||||    
T  33753377 attaggtattaggaataccttgatgaagttttgatgacagtcctctcaacaacaacgatatgaaa 33753441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 33849011 - 33849075
Alignment:
Q  150 attaggtattaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaa 214  Q
    |||||||||||||||||||||||||||| ||||| |||| || |||||||||||| ||| |||||    
T  33849011 attaggtattaggaataccttgatgaagttttgatgacagtcctctcaacaacaacgatatgaaa 33849075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 7389583 - 7389702
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggt 156  Q
    |||| |||||||||| |||||||||| ||||||||| |||  ||||||||||||| |  ||||||||| ||||||||| ||||||| |||||     |||    
T  7389583 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatccacgacatgtttgatttatcaag-atattaagaatta----gggt 7389677  T
Q  157 attaggaataccttgatgaagcttt 181  Q
    ||||||||||||| ||| |||||||    
T  7389678 attaggaatacctggataaagcttt 7389702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 28525421 - 28525512
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||| ||| ||||||| |||||    
T  28525421 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaagaatta 28525512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 28531517 - 28531608
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||| ||| ||||||| |||||    
T  28531517 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaagaatta 28531608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 30772201 - 30772150
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  30772201 ttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaa 30772150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 41297401 - 41297310
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| ||||||||||  ||||||||| ||||||||| |||| |||||||||||||||  ||||||||| ||||||||| |||| || |||||    
T  41297401 attatgaatcaatagcagaagcaaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaaggatataaagaatta 41297310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 428
Target Start/End: Original strand, 28525626 - 28525782
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc-- 366  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||||||||    | |||| | ||  | |||||||| |||||| || |||| ||||      
T  28525626 ttcttcctcaaccggtacctttatgcctcacgttctcttcagatggggaga----agagagagtttgccatgtacggtatattggggaccatagcctctt 28525721  T
Q  367 ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  28525722 ttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 28525782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 428
Target Start/End: Original strand, 28531722 - 28531878
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc-- 366  Q
    ||||||||||||  |||| |||||| |||| ||||||||||||||||||||    | |||| | ||  | |||||||| ||||||||| |||| ||||      
T  28531722 ttcttcctcaaccagtacctttatgcctcacgttctcttcagatggggaga----agagagagtttgccatgtacggtatattggagaccatagcctctt 28531817  T
Q  367 ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  28531818 ttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 28531878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 24054453 - 24054369
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatt 147  Q
    |||| |||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| ||||    
T  24054453 aatctatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatt 24054369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 30772416 - 30772316
Alignment:
Q  50 gttcaattattaggaatcaatagtggaagcaaactaaa-cattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatt 147  Q
    ||||||| |||| |||| || ||||||||||||| ||| || ||| |||  ||||||||||||| | |||||||||| ||||||||| ||||||| ||||    
T  30772416 gttcaataattatgaataaacagtggaagcaaacaaaaacaatgaacatgattatgatcggatcgacaacatgtttgatttatcaaggatattaagaatt 30772317  T
Q  148 a 148  Q
    |    
T  30772316 a 30772316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 26509887 - 26509823
Alignment:
Q  150 attaggtattaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaa 214  Q
    |||||||||||||||||  |  |||||||||||| |||| || |||||||| ||| |||||||||    
T  26509887 attaggtattaggaatatatgaatgaagctttgatgacagtcctctcaacatcaacgatctgaaa 26509823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 37896375 - 37896423
Alignment:
Q  100 ttatgatcggatctataacatgtttg-tttatcaagaatattaataatt 147  Q
    |||||||||||||||  ||||| ||| ||||||||||||||||||||||    
T  37896375 ttatgatcggatctacgacatgattgatttatcaagaatattaataatt 37896423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 10739578 - 10739733
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| | ||| |||||| ||||| |||||||||||||||||||| |    ||| | ||| ||||||||||||||||| || |||| |||||    
T  10739578 gttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaaga----gagagtttaccgtgtacggtgtattggggaccatagcctct 10739673  T
Q  368 tatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| || ||||  ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  10739674 tatattg-gatggccattagggtttcccattattccgttaatgggtcatccggacatccac 10739733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 10953347 - 10953502
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| | ||| |||||| ||||| |||||||||||||||||||| |    ||| | ||| ||||||||||||||||| || |||| |||||    
T  10953347 gttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaaga----gagagtttaccgtgtacggtgtattggggaccatagcctct 10953442  T
Q  368 tatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| || ||||  ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  10953443 tatattg-gatggccattagggtttcccattattccgttaatgggtcatccggacatccac 10953502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 24287907 - 24287750
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  24287907 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattgggga-catagcctct 24287812  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||| ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  24287811 tttatattg-gatgaccattagggtttcccattattccgttaatgggccatccggacatccac 24287750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 10733591 - 10733746
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| | ||| |||||| ||||| |||||||||||||||||||| |    ||| | ||  ||||||||||||||||| || |||| |||||    
T  10733591 gttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaaga----gagagtttgccgtgtacggtgtattggggaccatagcctct 10733686  T
Q  368 tatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  10733687 tatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 10733746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 10947360 - 10947515
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| | ||| |||||| ||||| |||||||||||||||||||| |    ||| | ||  ||||||||||||||||| || |||| |||||    
T  10947360 gttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaaga----gagagtttgccgtgtacggtgtattggggaccatagcctct 10947455  T
Q  368 tatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  10947456 tatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 10947515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 409
Target Start/End: Complemental strand, 48161078 - 48160741
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| |||| |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     ||||||||    
T  48161078 gaatcaatagcggaagcaaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaag-atattaagaatta----gggtattag 48160984  T
Q  162 gaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcgg 261  Q
    ||||||||  || |||||||    |||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | ||||||    
T  48160983 gaatacctgaataaagcttttgtaacagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagttagcgg 48160892  T
Q  262 cgacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggaga 356  Q
    ||||||     |||||||||||||  |||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| ||    
T  48160891 cgactaatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattgggga 48160795  T
Q  357 gcataacctcttata-gtgtgatgatcattagggttttccattattccgttaat 409  Q
     |||| |||||| ||  | |||||  ||||||||||| ||||||||||||||||    
T  48160794 ccatagcctcttttatatttgatggccattagggtttcccattattccgttaat 48160741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 6257444 - 6257582
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  6257444 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 6257540  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaat 409  Q
     ||||| || ||||| |||||||| |||||||||||||||||||    
T  6257541 tttatattg-gatgaccattaggg-tttccattattccgttaat 6257582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 409
Target Start/End: Complemental strand, 48167297 - 48166960
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| |||| |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     ||||||||    
T  48167297 gaatcaatagcggaagcaaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaag-atattaagaatta----gggtattag 48167203  T
Q  162 gaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcgg 261  Q
    ||||||||  || |||||||    |||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | ||||||    
T  48167202 gaatacctgaataaagcttttgtaacagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagttagcgg 48167111  T
Q  262 cgacta-----gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggaga 356  Q
    ||||||     |||||||||||||  |||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| ||    
T  48167110 cgactaatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattgggga 48167014  T
Q  357 gcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaat 409  Q
     |||| ||||  ||||| || ||||  ||||||||||| ||||||||||||||||    
T  48167013 ccatagcctcttttatattg-gatggccattagggtttcccattattccgttaat 48166960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 26957042 - 26957181
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| || |||| |||||    
T  26957042 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattggggaccatagcctct 26957138  T
Q  368 tata-gtgtgatgatcattagggttttccattattccgttaat 409  Q
    | ||  | |||||  ||||||||||| ||||||||||||||||    
T  26957139 tttatatttgatggccattagggtttcccattattccgttaat 26957181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 416
Target Start/End: Complemental strand, 50168516 - 50168370
Alignment:
Q  266 tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacct 365  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||    | |||| | ||  ||||||||||||||||| || |||| |||    
T  50168516 tagttcttcctcaac-ggtacctttatgcctcaagttctcttcagatggagaga----aaagagagttttgcgtgtacggtgtattggggaccatagcct 50168422  T
Q  366 cttatagtgtg-atgatcattagggttttccattattccgttaatcggtcat 416  Q
    ||| ||   || |||| |||||||||||||||||||| ||||||| ||||||    
T  50168421 cttttatattgaatgaccattagggttttccattatttcgttaatgggtcat 50168370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 427
Target Start/End: Original strand, 33461632 - 33461787
Alignment:
Q  269 ttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc-- 366  Q
    |||||||||||| ||||| |||||| |||||||||| ||||||||||||||    | |||| | ||| |||||||||| |||||| || |||| ||||      
T  33461632 ttcttcctcaaccggtacctttatgcctcaagttcttttcagatggggaga----agagagagtttaccgtgtacggtatattggggaccatagcctctt 33461727  T
Q  367 ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatcca 427  Q
    ||||| || ||||||||| ||||||| ||||||| ||||||||  ||||||  ||||||||    
T  33461728 ttatattg-gatgatcatcagggtttcccattatcccgttaatgagtcatccggacatcca 33461787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 33458308 - 33458422
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    ||||||||| |||||||||| ||| ||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     |||||||||    
T  33458308 aatcaatagcggaagcaaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggtattagg 33458403  T
Q  163 aataccttgatgaagcttt 181  Q
    ||||||| ||| |||||||    
T  33458404 aatacctggataaagcttt 33458422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 428
Target Start/End: Complemental strand, 9237236 - 9237145
Alignment:
Q  336 tcgtgtacggtgtattggagagcataacctcttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    ||||||||  ||||||||  | |||| ||||||||||||||||| |||||| || |||||||||| |||||||| ||||||| ||||||||||    
T  9237236 tcgtgtacaatgtattgggaatcatagcctcttatagtgtgatggtcattaagg-tttccattatcccgttaattggtcatccagacatccac 9237145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 50168770 - 50168626
Alignment:
Q  5 atgttggaaagttaggtgtcaagtaaaccagatggtataagactagttcaattattaggaatcaatagtggaagcaaactaaacattgatcatagttatg 104  Q
    |||||||||| |||||| | ||  |||||||||   |||| ||  ||||||  |||| |||||||||| |||||||||| ||||||||| |||  |||||    
T  50168770 atgttggaaatttaggtcttaataaaaccagattacataaaacacgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatg 50168671  T
Q  105 atcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| || ||  ||||||||| ||||||||||||||||| |||||    
T  50168670 atcgaatatacgacatgtttgatttatcaagaatattaacaatta 50168626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 10733281 - 10733372
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||  ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  10733281 attatgaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 10733372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 10739374 - 10739465
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| ||||||||||  ||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  10739374 attatgaatcaatagcagaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 10739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 10947050 - 10947141
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||  ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  10947050 attatgaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 10947141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 10953143 - 10953234
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| ||||||||||  ||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  10953143 attatgaatcaatagcagaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 10953234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 6257246 - 6257331
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||||| || |||||||||| ||||||||| |||  ||||||||||||||| |||||||||| ||||||||| || |||| |||||    
T  6257246 aatcaacagcggaagcaaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaaggatgttaagaatta 6257331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 3769699 - 3769600
Alignment:
Q  50 gttcaattattaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgttt-gtttatcaagaatattaataatta 148  Q
    ||||||| |||| ||||||||| |  |||||||| ||||||||| |||  |||||||||||||||  ||||||||  || |||||| |||||||||||||    
T  3769699 gttcaataattatgaatcaataatttaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttcattaatcaaggatattaataatta 3769600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 424
Target Start/End: Complemental strand, 35177710 - 35177563
Alignment:
Q  275 ctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc--ttatag 372  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||  ||   || | ||| | |||||||||||||||  ||  ||||||||  |||||     
T  35177710 ctcaaccgatacatttatgcctcaagttctcttcagatgaggagaccat---gatttattgttgtgtacggtgtattgaggactataacctcttttatat 35177614  T
Q  373 tgtgatgatcattagggttttccattattccgttaatcggtcatctagacat 424  Q
    || ||||| |||||||||||  ||||||||| ||||| ||||||| ||||||    
T  35177613 tg-gatgaccattagggtttctcattattcctttaataggtcatccagacat 35177563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 427
Target Start/End: Original strand, 33458506 - 33458662
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    |||||| |||||| | ||| |||||| |||||||||||||||||||||||||    | |||  | || ||||||||||| |||||| || |||| ||||     
T  33458506 gttctttctcaaccgatacctttatgcctcaagttctcttcagatggggaga----agagaaagtttgtcgtgtacggtatattggggaccatagcctct 33458601  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatcca 427  Q
     ||||| || ||||| | |||||||||  ||||||| ||||||| || |||| |||||||||    
T  33458602 tttatattg-gatgaccgttagggtttcgcattatttcgttaatgggccatccagacatcca 33458662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 33461434 - 33461518
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||||||||||||||||||| ||||||||| |||  ||||| |||||| ||  ||||||||| ||||||||| ||||||| |||||    
T  33461434 aatcaatagtggaagcaaacaaaacattgaacatgattatggtcggatttacgacatgtttgatttatcaag-atattaagaatta 33461518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 17627019 - 17627071
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| ||||||  || ||||||||||||||||||||||    
T  17627019 gttcttcctcaaccggtacttttatgcttctagttctcttcagatggggagaa 17627071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 49976505 - 49976455
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  49976505 gttcttcctcaac-ggtac-tttatgcctcaagttctcttcagatggggagaa 49976455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 4632302 - 4632257
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatg 313  Q
    ||||||||||||| ||||  |||||| |||||||||||||||||||    
T  4632302 gttcttcctcaaccggtatctttatgcctcaagttctcttcagatg 4632257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 9237495 - 9237398
Alignment:
Q  50 gttcaattattaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataat 146  Q
    ||||||| |||| |||| |||||| |||||||||  ||||||||  ||  ||||| |||||| ||  ||||||||| ||||||||| |||||||||||    
T  9237495 gttcaatgattatgaatgaatagtcgaagcaaacagaacattgaatatgattatgctcggatttacgacatgtttgatttatcaagtatattaataat 9237398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 17627125 - 17627169
Alignment:
Q  382 cattagggttttccattattccgttaatcggtcatctagacatcc 426  Q
    ||||||||||||| |||||||||||||| |||||||  |||||||    
T  17627125 cattagggttttcaattattccgttaatgggtcatcctgacatcc 17627169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 44831858 - 44831910
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||  |||||| |||||||||||||| |||| ||||||    
T  44831858 gttcttcctcaaccggtatttttatgcctcaagttctcttcggatgcggagaa 44831910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 6443 - 6285
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  6443 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 6347  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  6346 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 6285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 12316 - 12158
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  12316 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 12220  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  12219 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 12158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 1078165 - 1078007
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||| ||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  1078165 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggtgaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 1078069  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  1078068 tttatattg-gatggccattagggtttcccattattccgttaatgggtcatccggacatccac 1078007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 8093085 - 8093242
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||    | |||| | ||  ||||| |||| |||||| || |||| |||||    
T  8093085 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga----aaagagagtttgccgtgttcggtatattggggaccatagcctct 8093180  T
Q  368 tata-gtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    | ||  | |||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  8093181 tttatatttgatgatcgttagggtttcccattattccgttaatgggtcatccggacatccac 8093242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 428
Target Start/End: Original strand, 25387544 - 25387901
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     ||||||||    
T  25387544 gaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggtattag 25387639  T
Q  162 gaataccttgatgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcgg 261  Q
    |||||||| ||| ||||||| |  |||  | ||||| |||||| |||   || ||| |||||||||     | |||||||| |||  | || | ||||||    
T  25387640 gaatacctggataaagctttaaaaacagccctctcatcaacaacgat---aaccaaagagaggaga-----tgatctgaaacacacaatagagttagcgg 25387731  T
Q  262 cgac-----tagttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggaga 356  Q
    || |     | ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  |||||||||| |||||| ||    
T  25387732 cggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtatattgggga 25387828  T
Q  357 gcataacctc--ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     |||| ||||  ||||| || ||||  ||||||||||| |||||||||| ||||| || ||||  |||||||||    
T  25387829 ccatagcctcttttatattg-gatggccattagggtttcccattattccattaatgggccatccggacatccac 25387901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 31057965 - 31057807
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| | |  |||| ||| ||||||||||| |||||| || |||| |||||    
T  31057965 gttcttccttaaccggtacctttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtatattggggatcatagcctct 31057869  T
Q  368 t--atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |  ||| ||| |||  ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  31057868 tttatattgt-atggccattagggtttcccattattccgttaatgggtcatccggacatccac 31057807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 25381774 - 25381932
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||  | | ||||| |||  ||||||||||||||||| || |||| ||||     
T  25381774 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggaga--agagagagt-attgccgtgtacggtgtattggggaccatagcctct 25381870  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||| ||||| || ||||  |||||||||    
T  25381871 tttatattg-gatggccattagggtttcccattattccattaatgggccatccggacatccac 25381932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 31051465 - 31051307
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctct 367  Q
    ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| | |  |||| ||| ||||||||||| |||||| || |||| |||||    
T  31051465 gttcttccttaaccggtacctttatgcctcaagttctcttcagatggggagaagaga--gagt-attgtcgtgtacggtatattggggaccatagcctct 31051369  T
Q  368 t--atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |  ||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  31051368 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 31051307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 34740110 - 34740019
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  34740110 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 34740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 34739906 - 34739749
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||| ||||||    | |||| | || ||||||||||| |||||| || || | ||||     
T  34739906 gttcttcctcaaccggtacctttatgcctcaagttctcttcagattgggaga----agagagagtttgtcgtgtacggtatattggggaccacagcctct 34739811  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  ||||||||||| |||||||||||||||| || ||||  |||||||||    
T  34739810 tttatattg-gatggccattagggtttcccattattccgttaatgggccatccggacatccac 34739749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 1078342 - 1078257
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| |||| |||||||||||| |||||    
T  1078342 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaagaatattaagaatta 1078257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 44409921 - 44409763
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    |||||||||||||  |||| |||||| |||||||||||||||||||||||||  | | |||||  || |||||||  ||||||||| || |||||||||     
T  44409921 gttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggaga--agagagagt-tttgtcgtgtatagtgtattggggaccataacctct 44409825  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
     ||||| || ||||  |||||||||||  ||||||||||||||| || ||||  |||||||||    
T  44409824 tttatattg-gatggccattagggtttctcattattccgttaatgggccatccggacatccac 44409763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 12183619 - 12183697
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaaga 135  Q
    |||| ||||||||||||||||||||| ||| ||||| |||| ||||||| |||||||  ||||||||| ||||||||||    
T  12183619 attatgaatcaatagtggaagcaaacaaaatattgaacataattatgattggatctacgacatgtttgatttatcaaga 12183697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 25381575 - 25381690
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  | ||||||| |||| |||| ||||||| |||||     ||||||||    
T  25381575 gaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgaaatgtttgatttaccaaggatattaagaatta----gggtattag 25381670  T
Q  162 gaataccttgatgaagcttt 181  Q
    |||||||| ||| |||||||    
T  25381671 gaatacctggataaagcttt 25381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 8092887 - 8093001
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattagg 162  Q
    |||||||||  ||||||||  ||||||||| |||  |||||||||||||||| ||||||||| ||||||||| ||||||| |||    || ||||| |||    
T  8092887 aatcaatagcagaagcaaataaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaat----ttgggtatgagg 8092982  T
Q  163 aataccttgatgaagcttt 181  Q
    ||||||| ||| |||||||    
T  8092983 aatacctggataaagcttt 8093001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 431
Target Start/End: Original strand, 24927000 - 24927160
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    ||||||||||||| ||||| | |||| |||||||||||||||||||||||||    | |||| | ||  |  ||| || |||||||  | |||| ||||     
T  24927000 gttcttcctcaaccggtacctatatgcctcaagttctcttcagatggggaga----agagagagttttccacgtatggagtattgggaaccatagcctct 24927095  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccaccat 431  Q
     ||||| || ||||| ||||||||||| |||||||||||||||| || |||| |||||||||||||    
T  24927096 tttatattg-gatgaccattagggtttcccattattccgttaatgggccatccagacatccaccat 24927160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 27955279 - 27955218
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg 125  Q
    ||||||||| |||||||||| ||||||||| |||  ||||||||||||||| ||||||||||    
T  27955279 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacaacatgtttg 27955218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 31058162 - 31058078
Alignment:
Q  64 aatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  31058162 aatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag-atattaagaatta 31058078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 24963948 - 24964000
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    |||||||||||||  ||||||||||| ||||||| ||||||||||||||||||    
T  24963948 gttcttcctcaaccagtacatttatgcctcaagtcctcttcagatggggagaa 24964000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 24926789 - 24926880
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||| | ||||||||| |||   ||||| ||||||||  ||||||||| ||||||||||||||||| |||||    
T  24926789 attatgaatcaatagcggaagcaaccaaaacattgaacattaatatgaacggatctacgacatgtttgatttatcaagaatattaagaatta 24926880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 428
Target Start/End: Complemental strand, 50306090 - 50305960
Alignment:
Q  295 ctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctctt--atagtgtgatgatcattagggttt 392  Q
    |||||||||||||||||||||||||| |    |||   ||  ||||||||||||||||| || |||| ||||||  ||| || ||||| |||||||||||    
T  50306090 ctcaagttctcttcagatggggagaaga----gagaatttgccgtgtacggtgtattggggaccatagcctcttttatattg-gatgaccattagggttt 50305996  T
Q  393 tccattattccgttaatcggtcatctagacatccac 428  Q
     |||||||||||||||| || ||||  |||||||||    
T  50305995 cccattattccgttaatgggccatccggacatccac 50305960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 38152097 - 38152151
Alignment:
Q  154 ggtattaggaataccttgatgaagctttgacgacaatcatctcaacaacaatgat 208  Q
    ||||||||||||||||  ||||| |||||| ||||||| ||||||||||||||||    
T  38152097 ggtattaggaatacctgaatgaaactttgatgacaatcctctcaacaacaatgat 38152151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 659 - 774
Alignment:
Q  63 gaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattag 161  Q
    |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||     ||||||||    
T  659 gaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta----gggtattag 754  T
Q  162 gaataccttgatgaagcttt 181  Q
    |||||||| ||| |||||||    
T  755 gaatacctggataaagcttt 774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 858 - 910
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  858 gttcttcctcaaccggtacgtttatgcctcaagttctcttcagatggggagaa 910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 5659 - 5568
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| ||||||||| |||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  5659 attatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatta 5568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 173129 - 173267
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctc- 366  Q
    |||||||||||||  |||| |||||| |||||||||||||||||||||||||    | |||| | ||  ||| ||||||||||||| || |||| ||||     
T  173129 gttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggaga----agagagagtttgccgtatacggtgtattggggaccatagcctct 173224  T
Q  367 -ttatagtgtgatgatcattagggttttccattattccgttaat 409  Q
     ||||| || ||||| ||||||||||| ||||||||||||||||    
T  173225 tttatattg-gatgaccattagggtttcccattattccgttaat 173267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 172925 - 173016
Alignment:
Q  58 attaggaatcaatagtggaagcaaactaaacattgatcatagttatgatcggatctataacatgttt-gtttatcaagaatattaataatta 148  Q
    |||| |||||||||| |||||||||| |||||||||  ||  |||||||||||||||  ||||||||  ||||||||| ||||||| |||||    
T  172925 attatgaatcaatagcggaagcaaacaaaacattgaaaatgattatgatcggatctacgacatgtttaatttatcaaggatattaagaatta 173016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 320
Target Start/End: Original strand, 1245 - 1485
Alignment:
Q  74 ggaagcaaactaaacattgatcatagttatgatcggatctataacatgtttg-tttatcaagaatattaataattatattaggtattaggaataccttga 172  Q
    |||||||||| ||||||||| |||  |||||||||||||||  | ||||||| ||||||||| ||||||| |||||     |||||||||||||||| ||    
T  1245 ggaagcaaacaaaacattgaacatgattatgatcggatctacgatatgtttgatttatcaaggatattaagaattag----ggtattaggaatacctgga 1340  T
Q  173 tgaagctttgacgacaatcatctcaacaacaatgatctgaaacaaggagaggagattatctaatctgaaatacaataaagggctagcggcgacta----- 267  Q
    | ||||||| | | ||  | ||||| |||||| |||   || ||| |||||||||| ||||     |||| |||  | || | |||||||||||          
T  1341 taaagctttcaaggcatccctctcatcaacaacgat---aaccaaagagaggagatgatct-----gaaacacacaatagagttagcggcgactgatttg 1432  T
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  1433 gtttttcctcaaccggtacatttatgcctcaagttctcttcagatggggagaa 1485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 424
Target Start/End: Complemental strand, 949 - 830
Alignment:
Q  302 tctcttcagatggggagaatatatagagtgattatcgtgtacggtgtattggagagcataacctctt--atagtgtgatgatcattagggttttccatta 399  Q
    ||||||||||||||||||| |    ||| | || |||||||| ||||||||| || |||| ||||||  ||| || ||||| ||||||||||| ||||||    
T  949 tctcttcagatggggagaaga----gagagtttgtcgtgtacagtgtattggggaccatagcctcttttatattg-gatgaccattagggtttcccatta 855  T
Q  400 ttccgttaatcggtcatctagacat 424  Q
    ||| |||||| ||||||||||||||    
T  854 ttctgttaatgggtcatctagacat 830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 1004 - 952
Alignment:
Q  268 gttcttcctcaactggtacatttatgtctcaagttctcttcagatggggagaa 320  Q
    ||||||||||||| | ||  |||||| ||||||||||||||||||||||||||    
T  1004 gttcttcctcaaccgttatctttatgcctcaagttctcttcagatggggagaa 952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 14121 - 14036
Alignment:
Q  344 ggtgtattggagagcataacctctt--atagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatccac 428  Q
    |||||||||| || |||||||||||  ||| || ||||| ||||||||||| |||||||||||||||| |||||||  |||||||||    
T  14121 ggtgtattggggaccataacctcttttatattg-gatgaccattagggtttcccattattccgttaatgggtcatccggacatccac 14036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 425
Target Start/End: Complemental strand, 1222 - 1134
Alignment:
Q  336 tcgtgtacggtgtattggagagcataacctcttatagtgtgatgatcattagggttttccattattccgttaatcggtcatctagacatc 425  Q
    ||||||||  ||||||||| | ||||  |||||||||||||||| |||||| || |||| ||||| |||||||| |||| ||||||||||    
T  1222 tcgtgtacaatgtattggaaatcatagtctcttatagtgtgatggtcattaagg-tttctattatcccgttaattggtcgtctagacatc 1134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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