View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_220 (Length: 253)
Name: NF9913A_low_220
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_220 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 8072921 - 8072676
Alignment:
| Q |
5 |
agtatttaaacacgtcattgtactttgcaatcgtaagaatcgcataatnnnnnnnctacatcaaccacttttctgtcggaaacgtaggcacaattagtcg |
104 |
Q |
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| T |
8072921 |
agtatttaaacacgacattgtactttgcaatcgtaagaattgcataatagaaaaactacatcagccactttgctgtcggaaacgtaggcacaattagtcg |
8072822 |
T |
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| Q |
105 |
aactatgtgatcaatcatttgtgttctggtgtgcattttatttatttgttttctttagaaccaaatatgctgatctaacatattgaataccttcttggtc |
204 |
Q |
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| T |
8072821 |
aactatgtgatcaatcatttgtgttcttgtgtgcattttatttatttgttttctttagaaccaaatatgctgatctaacatattgaataccttcttggtc |
8072722 |
T |
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| Q |
205 |
gccaagagttctttttccaataaatcagctcgattaatagtattat |
250 |
Q |
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| T |
8072721 |
gccaagagttctttttccaataaatcagctcgattaatagtattat |
8072676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 4008795 - 4008896
Alignment:
| Q |
60 |
ctacatcaaccacttttctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttctggtgtgcattttatttatttgttttctt |
159 |
Q |
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| T |
4008795 |
ctacaacaaccaccctactgtcggagacgtagacacaattagccaaactttgtgatcaatca-ttgtgtttttctgtgca-tttatttttctgttttctt |
4008892 |
T |
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| Q |
160 |
taga |
163 |
Q |
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|||| |
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| T |
4008893 |
taga |
4008896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 47472497 - 47472589
Alignment:
| Q |
70 |
cacttttctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttctggtgtgcattttatttatttgttttctttaga |
163 |
Q |
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| T |
47472497 |
cactttgctgtcggagacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgcattt-atttatttgttttctttaga |
47472589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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